Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005097

Physical Location & Seq

Genomic Coordinates Forward (+)

6262675 .. 6265014

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g08160.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGTTTTGTTTTCCGAGGGACTAGAGCAGATATTGAAAGTGGCTTTCCAGGACATATTCCCGAACGACCAGCAATGCGTATACATGCAGCTCGACCAGTTAGTATGAATTCACTGGCATTTCTTGTCACGGTTATACTGCTATTCATGATATTAAACTCTCACCAGATGTCTCCGAACTTTCTGCTGTGGCTAGTTGTGGGTGTCTTTTTGATGGCCACAACCCTGAGGATGTTTGCAACTTGTCAGCAACTTCAAGCCCAAGCCCGATCACATGCTGCAGCTGCAAGTGGCATGCTCAGTCATACGGAACTGCGACTGCACATGCCACCTTCAATAGCTTTTGCAACCAGAGGACGATTACAAGGACTAAGACTCCAGCTGGCACTGCTTGACCGTGAGTTTGATGATCTAGATTATGATACTTTGAGGGCTCTGGATTCTGATAATGCCTCAACAGCAACTTCAATGAGCGAGGAGGAGATTAATGCTTTACCCGTCCACAAGCACAAAGTCACTGGCCCAGAGAACATTGATTGCTCGTCACTGCAACAGGCATCATCATCTTCAGCTCCAGTTGAGCTGACAAAGCAAGACGGGTGCATGAAGGAGCAAGACTCCAAAAGGATGGACGGGAGCATGAAGGATTTAGAAAATGAGCTGACATGCAGCATTTGCTTAGAGCAAGTTAACAGAGGGGACCTAGTTCGTAGCTTGCCATGTTTGCATCAGTTCCATGCTAACTGCATAGATCCTTGGCTCCGGCAGCAAGGCACATGCCCTGTGTGTAAATTTAGAGCTGGGTCAACATGGCAGGAGAGCCGGGAGAGTGAATCGGACGGTTCGGACACGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

286

Amino Acids

31.64

Weight (kDa)

5.79

Isoelectric Point (pI)

66.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55530
fragaria_vesca	FvH4_7g22830 FvH4_7g22830
malus_domestica	MD01G1136500.v1.1 MD07G1201500.v1.1 MD11G1096300.v1.1
prunus_persica	Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1
pyrus_communis	pycom01g15720 pycom07g18850 pycom11g08160
rosa_chinensis	RchiOBHm_Chr1g0367981
rosa_laevigata	RLG00000027249
rosa_multiflora	Rmu_co8208940.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288980
rosa_rugosa	Rorug01G0338200 Rorug01G0338200 Rorug01G0338200 Rorug01G0338300
rosa_samantha	Rh1AG345000 Rh1BG307200 Rh1CG322800 Rh1DG339300
rosa_wichuraiana	Rw1G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	82
AclWI	GGATC	1 cut(s)	746
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	2 cut(s)	109, 791
AcuI	CTGAAG	1 cut(s)	552
AgsI	TTSAA	4 cut(s)	38, 257, 336, 468
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	9 cut(s)	92, 284, 341, 382, 572, 583, 661, 714, 800
AluI	AGCT	9 cut(s)	92, 284, 341, 382, 572, 583, 661, 714, 800
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	1 cut(s)	746
AoxI	GGCC	2 cut(s)	216, 520
ApeKI	GCWGC	6 cut(s)	89, 278, 281, 284, 669, 766
ApoI	RAATTY	2 cut(s)	109, 791
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AseI	ATTAAT	1 cut(s)	486
AspS9I	GGNCC	2 cut(s)	521, 700
AsuC2I	CCSGG	1 cut(s)	824
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	700
AxyI	CCTNAGG	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	436
BbvI	GCAGC	6 cut(s)	101, 265, 271, 293, 681, 778
BccI	CCATC	2 cut(s)	208, 622
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciT130I	CCWGG	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	824
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	4 cut(s)	24, 194, 413, 704
BfmI	CTRYAG	1 cut(s)	279
BisI	GCNGC	6 cut(s)	90, 279, 282, 285, 670, 767
BlsI	GCNGC	6 cut(s)	91, 280, 283, 286, 671, 768
Bme1390I	CCNGG	2 cut(s)	51, 824
Bme18I	GGWCC	1 cut(s)	700
BmgT120I	GGNCC	2 cut(s)	521, 700
BmiI	GGNNCC	2 cut(s)	701, 761
BmrFI	CCNGG	2 cut(s)	51, 824
BmsI	GCATC	2 cut(s)	566, 736
BplI	GAGNNNNNCTC	2 cut(s)	602, 634
BpmI	CTGGAG	2 cut(s)	362, 558
BpuMI	CCSGG	1 cut(s)	824
BsaJI	CCNNGG	2 cut(s)	16, 755
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bse1I	ACTGG	4 cut(s)	98, 120, 523, 575
Bse21I	CCTNAGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	16, 755
BseGI	GGATG	2 cut(s)	237, 633
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	2 cut(s)	218, 313
BseNI	ACTGG	4 cut(s)	98, 120, 523, 575
BseRI	GAGGAG	2 cut(s)	491, 494
BseXI	GCAGC	6 cut(s)	101, 265, 271, 293, 681, 778
BseYI	CCCAGC	1 cut(s)	800
BsgI	GTGCAG	1 cut(s)	305
BshFI	GGCC	2 cut(s)	218, 522
BsiSI	CCGG	2 cut(s)	763, 823
BslFI	GGGAC	2 cut(s)	34, 713
BsmAI	GTCTC	1 cut(s)	177
BsmFI	GGGAC	2 cut(s)	34, 713
BsnI	GGCC	2 cut(s)	218, 522
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	3 cut(s)	269, 409, 751
BspANI	GGCC	2 cut(s)	218, 522
BspCNI	CTCAG	2 cut(s)	219, 312
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	701, 761
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	1 cut(s)	746
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	4 cut(s)	98, 120, 523, 575
BssECI	CCNNGG	2 cut(s)	16, 755
BssMI	GATC	3 cut(s)	269, 409, 751
BssNAI	GTATAC	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	755
Bst1107I	GTATAC	1 cut(s)	83
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	4 cut(s)	133, 398, 842, 853
BstAPI	GCANNNNNTGC	1 cut(s)	675
BstC8I	GCNNGC	3 cut(s)	296, 384, 716
BstDEI	CTNAG	4 cut(s)	227, 299, 371, 679
BstF5I	GGATG	2 cut(s)	237, 633
BstKTI	GATC	3 cut(s)	272, 412, 754
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	3 cut(s)	269, 409, 751
BstMWI	GCNNNNNNNGC	7 cut(s)	284, 388, 458, 589, 675, 724, 766
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	6 cut(s)	89, 278, 298, 328, 669, 780
BstSCI	CCNGG	2 cut(s)	49, 822
BstSFI	CTRYAG	1 cut(s)	279
BstV1I	GCAGC	6 cut(s)	101, 265, 271, 293, 681, 778
BstX2I	RGATCY	1 cut(s)	751
BstXI	CCANNNNNNTGG	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	751
BstZ17I	GTATAC	1 cut(s)	83
Bsu36I	CCTNAGG	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	218, 522
BtsCI	GGATG	2 cut(s)	237, 633
BtsI	GCAGTG	2 cut(s)	386, 545
BtsIMutI	CAGTG	4 cut(s)	113, 386, 516, 545
Cac8I	GCNNGC	3 cut(s)	296, 384, 716
CciI	TCATGA	1 cut(s)	147
Cfr13I	GGNCC	2 cut(s)	521, 700
DdeI	CTNAG	4 cut(s)	227, 299, 371, 679
DpnI	GATC	3 cut(s)	271, 411, 753
DpnII	GATC	3 cut(s)	269, 409, 751
EaeI	YGGCCR	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	755
Eco24I	GRGCYC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	700
Eco57I	CTGAAG	1 cut(s)	552
Eco81I	CCTNAGG	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	700
EcoRI	GAATTC	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	755
EcoT38I	GRGCYC	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	755
FaqI	GGGAC	2 cut(s)	34, 713
FblI	GTMKAC	1 cut(s)	82
Fnu4HI	GCNGC	6 cut(s)	90, 279, 282, 285, 670, 767
FokI	GGATG	2 cut(s)	244, 640
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	6 cut(s)	90, 279, 282, 285, 670, 767
FspBI	CTAG	4 cut(s)	24, 194, 413, 704
GluI	GCNGC	6 cut(s)	90, 279, 282, 285, 670, 767
GsaI	CCCAGC	1 cut(s)	804
GsuI	CTGGAG	2 cut(s)	362, 558
HaeIII	GGCC	2 cut(s)	218, 522
HapII	CCGG	2 cut(s)	763, 823
HincII	GTYRAC	2 cut(s)	691, 807
HindII	GTYRAC	2 cut(s)	691, 807
HinfI	GANTC	4 cut(s)	375, 440, 617, 833
HpaI	GTTAAC	1 cut(s)	691
HpaII	CCGG	2 cut(s)	763, 823
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	4 cut(s)	83, 502, 691, 807
Hpy188I	TCNGA	5 cut(s)	17, 177, 445, 838, 847
Hpy188III	TCNNGA	4 cut(s)	62, 148, 413, 437
Hpy8I	GTNNAC	4 cut(s)	83, 502, 691, 807
HpyAV	CCTTC	3 cut(s)	342, 601, 637
HpyCH4III	ACNGT	4 cut(s)	133, 398, 842, 853
HpyF10VI	GCNNNNNNNGC	7 cut(s)	284, 388, 458, 589, 675, 724, 766
HpyF3I	CTNAG	4 cut(s)	227, 299, 371, 679
KspAI	GTTAAC	1 cut(s)	691
Kzo9I	GATC	3 cut(s)	269, 409, 751
LmnI	GCTCC	4 cut(s)	577, 610, 636, 765
Lsp1109I	GCAGC	6 cut(s)	101, 265, 271, 293, 681, 778
LweI	GCATC	2 cut(s)	566, 736
MaeI	CTAG	4 cut(s)	24, 194, 413, 704
MaeIII	GTNAC	3 cut(s)	127, 514, 543
MalI	GATC	3 cut(s)	271, 411, 753
MboI	GATC	3 cut(s)	269, 409, 751
MboII	GAAGA	1 cut(s)	558
MflI	RGATCY	1 cut(s)	751
MhlI	GDGCHC	1 cut(s)	436
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	2 cut(s)	109, 791
MluNI	TGGCCA	1 cut(s)	218
MlyI	GAGTC	2 cut(s)	369, 611
MnlI	CCTC	8 cut(s)	11, 222, 347, 423, 463, 469, 472, 689
Mox20I	TGGCCA	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	3 cut(s)	155, 486, 690
Msp20I	TGGCCA	1 cut(s)	218
MspA1I	CMGCKG	2 cut(s)	284, 382
MspI	CCGG	2 cut(s)	763, 823
MspR9I	CCNGG	2 cut(s)	51, 824
MvaI	CCWGG	1 cut(s)	51
MwoI	GCNNNNNNNGC	7 cut(s)	284, 388, 458, 589, 675, 724, 766
NciI	CCSGG	1 cut(s)	824
NdeII	GATC	3 cut(s)	269, 409, 751
NlaIV	GGNNCC	2 cut(s)	701, 761
NmuCI	GTSAC	3 cut(s)	127, 514, 543
NspI	RCATGY	6 cut(s)	89, 278, 298, 328, 669, 780
PaeI	GCATGC	1 cut(s)	298
PagI	TCATGA	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	440, 833
PfoI	TCCNGGA	1 cut(s)	49
PkrI	GCNGC	6 cut(s)	91, 280, 283, 286, 671, 768
PleI	GAGTC	2 cut(s)	369, 611
PpsI	GAGTC	2 cut(s)	369, 611
PpuMI	RGGWCCY	1 cut(s)	700
PshBI	ATTAAT	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	700
Psp6I	CCWGG	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	800
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	701, 761
PspPI	GGNCC	2 cut(s)	521, 700
PspPPI	RGGWCCY	1 cut(s)	700
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	751
PvuII	CAGCTG	2 cut(s)	284, 382
SaqAI	TTAA	3 cut(s)	155, 486, 690
SatI	GCNGC	6 cut(s)	90, 279, 282, 285, 670, 767
Sau3AI	GATC	3 cut(s)	269, 409, 751
Sau96I	GGNCC	2 cut(s)	521, 700
SchI	GAGTC	2 cut(s)	369, 611
ScrFI	CCNGG	2 cut(s)	51, 824
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	2 cut(s)	566, 736
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	700
SphI	GCATGC	1 cut(s)	298
Sse9I	AATT	2 cut(s)	109, 791
SspMI	CTAG	4 cut(s)	24, 194, 413, 704
StyD4I	CCNGG	2 cut(s)	49, 822
StyI	CCWWGG	1 cut(s)	755
TaaI	ACNGT	4 cut(s)	133, 398, 842, 853
TaqI	TCGA	1 cut(s)	94
TasI	AATT	2 cut(s)	109, 791
TfiI	GAWTC	2 cut(s)	440, 833
Tru1I	TTAA	3 cut(s)	155, 486, 690
Tru9I	TTAA	3 cut(s)	155, 486, 690
TscAI	CASTG	4 cut(s)	120, 393, 523, 552
TseFI	GTSAC	3 cut(s)	127, 514, 543
TseI	GCWGC	6 cut(s)	89, 278, 281, 284, 669, 766
Tsp45I	GTSAC	3 cut(s)	127, 514, 543
TspDTI	ATGAA	4 cut(s)	122, 136, 620, 656
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	4 cut(s)	120, 393, 523, 552
VpaK11BI	GGWCC	1 cut(s)	700
VspI	ATTAAT	1 cut(s)	486
XapI	RAATTY	2 cut(s)	109, 791
XbaI	TCTAGA	1 cut(s)	412
XceI	RCATGY	6 cut(s)	89, 278, 298, 328, 669, 780
XmiI	GTMKAC	1 cut(s)	82
XspI	CTAG	4 cut(s)	24, 194, 413, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.