Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005097

Physical Location & Seq

Genomic Coordinates Forward (+)

4904579 .. 4908359

Gene Structure 3781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G071900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAGTTTTGTTTTCCGAGGGGCTAGAGCAGATATTGAAAGTGGCTTTCCAGGATTTATTCCTGAACGACCAGCAATGCGTATTCATGCTTCTCGACCAGTAAGCACGAATTCACTGGCTTTTCTTGTCACGGTTATCTTGCTATTCATGCTTTTAAACTCTCACCAGATGTCACCGAATTTTCTGCTCTGGCTAGTTGTGGGTGTCTTTTTGATGGCCACAACCCTGAGGATGTTTGCAACTTGTCAGCAACTTCAAGCACAGGCTAGAGCACATGCTGCAGCTGCCAGTGGGTTGCTTAATCATACGGAACTGCGACTGCACATGCCACCTTCAATAGCTTTTGCAACCAGAGGACGGTTACAAGGACTAAGACTCCAGTTGGCACTACTTGACCGGGAGTTTGATGATCTAGATTATGATACTTTGAGGGCTCTGGACTCTGATAATGCCTCTACAGCAACTTCAATGAGCGAGGAGGAGATTAATGCCTTACCTGTCCACAAGCACAAAGTCACCGACCCAGAGATCCTGGATGGTTCATCACTGCAACAGGCATCATCATCTTCAGCCCCAGTTGAGCTGAAAAAGCAAGACTCCAAAAGGGTGGATGGAGGCATGAAGGATCCAGAAGATGAGTTGACATGCAGCATTTGCTTGGAGCAAGTTAACGGAGGGGACCTAGTGCGTAGCTTGCCATGTTTGCATCAGTTCCATGCCAACTGCATAGATCCATGGCTCCGGCAGCAAGGCACATGCCCTGTGTGCAAATTTAGAGCTGGATCAAGATGGCCGGAGAGCAGGGAGAGCGAATCCGACGGTTCAGACATGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

279

Amino Acids

30.72

Weight (kDa)

5.71

Isoelectric Point (pI)

66.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55530
fragaria_vesca	FvH4_7g22830 FvH4_7g22830
malus_domestica	MD01G1136500.v1.1 MD07G1201500.v1.1 MD11G1096300.v1.1
prunus_persica	Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1
pyrus_communis	pycom01g15720 pycom07g18850 pycom11g08160
rosa_chinensis	RchiOBHm_Chr1g0367981
rosa_laevigata	RLG00000027249
rosa_multiflora	Rmu_co8208940.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288980
rosa_rugosa	Rorug01G0338200 Rorug01G0338200 Rorug01G0338200 Rorug01G0338300
rosa_samantha	Rh1AG345000 Rh1BG307200 Rh1CG322800 Rh1DG339300
rosa_wichuraiana	Rw1G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	523, 620, 633, 725, 790
AcoI	YGGCCR	2 cut(s)	216, 791
AcsI	RAATTY	3 cut(s)	109, 178, 770
AcuI	CTGAAG	1 cut(s)	552
AfiI	CCNNNNNNNGG	1 cut(s)	357
AgsI	TTSAA	4 cut(s)	38, 257, 336, 468
AjnI	CCWGG	2 cut(s)	49, 531
AluBI	AGCT	5 cut(s)	284, 341, 583, 693, 779
AluI	AGCT	5 cut(s)	284, 341, 583, 693, 779
Alw21I	GWGCWC	1 cut(s)	274
AlwI	GGATC	5 cut(s)	523, 620, 633, 725, 790
AoxI	GGCC	2 cut(s)	216, 791
ApeKI	GCWGC	5 cut(s)	278, 281, 284, 648, 745
ApoI	RAATTY	3 cut(s)	109, 178, 770
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AseI	ATTAAT	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	679
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	3 cut(s)	155, 165, 508
AvaII	GGWCC	1 cut(s)	679
AxyI	CCTNAGG	1 cut(s)	227
BalI	TGGCCA	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	625
BanII	GRGCYC	1 cut(s)	436
BarI	GAAGNNNNNNTAC	2 cut(s)	73, 105
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	5 cut(s)	265, 271, 293, 660, 757
BccI	CCATC	4 cut(s)	208, 530, 605, 783
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciT130I	CCWGG	2 cut(s)	51, 533
BcnI	CCSGG	1 cut(s)	398
BfaI	CTAG	5 cut(s)	24, 194, 267, 413, 683
BfmI	CTRYAG	2 cut(s)	279, 456
BisI	GCNGC	5 cut(s)	279, 282, 285, 649, 746
BlsI	GCNGC	5 cut(s)	280, 283, 286, 650, 747
Bme1390I	CCNGG	3 cut(s)	51, 398, 533
Bme18I	GGWCC	1 cut(s)	679
BmgT120I	GGNCC	1 cut(s)	679
BmiI	GGNNCC	3 cut(s)	627, 680, 740
BmrFI	CCNGG	3 cut(s)	51, 398, 533
BmrI	ACTGGG	1 cut(s)	569
BmsI	GCATC	2 cut(s)	566, 715
BmuI	ACTGGG	1 cut(s)	569
BpmI	CTGGAG	1 cut(s)	362
BpuMI	CCSGG	1 cut(s)	398
BsaJI	CCNNGG	2 cut(s)	16, 734
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse1I	ACTGG	5 cut(s)	98, 120, 288, 379, 575
Bse21I	CCTNAGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	51, 533
BseDI	CCNNGG	2 cut(s)	16, 734
BseGI	GGATG	3 cut(s)	237, 541, 616
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	5 cut(s)	98, 120, 288, 379, 575
BseRI	GAGGAG	2 cut(s)	491, 494
BseXI	GCAGC	5 cut(s)	265, 271, 293, 660, 757
BsgI	GTGCAG	1 cut(s)	305
BshFI	GGCC	2 cut(s)	218, 793
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	3 cut(s)	397, 742, 794
BslFI	GGGAC	1 cut(s)	692
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmFI	GGGAC	1 cut(s)	692
BsnI	GGCC	2 cut(s)	218, 793
Bsp1286I	GDGCHC	2 cut(s)	274, 436
Bsp143I	GATC	5 cut(s)	409, 528, 625, 730, 782
Bsp19I	CCATGG	1 cut(s)	734
BspANI	GGCC	2 cut(s)	218, 793
BspCNI	CTCAG	1 cut(s)	219
BspLI	GGNNCC	3 cut(s)	627, 680, 740
BspMAI	CTGCAG	1 cut(s)	283
BspPI	GGATC	5 cut(s)	523, 620, 633, 725, 790
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	5 cut(s)	98, 120, 288, 379, 575
BssECI	CCNNGG	2 cut(s)	16, 734
BssMI	GATC	5 cut(s)	409, 528, 625, 730, 782
BssT1I	CCWWGG	1 cut(s)	734
Bst2UI	CCWGG	2 cut(s)	51, 533
Bst4CI	ACNGT	3 cut(s)	133, 360, 821
BstAPI	GCANNNNNTGC	2 cut(s)	278, 654
BstC8I	GCNNGC	1 cut(s)	695
BstDEI	CTNAG	2 cut(s)	227, 371
BstDSI	CCRYGG	1 cut(s)	734
BstF5I	GGATG	3 cut(s)	237, 541, 616
BstKTI	GATC	5 cut(s)	412, 531, 628, 733, 785
BstMBI	GATC	5 cut(s)	409, 528, 625, 730, 782
BstNI	CCWGG	2 cut(s)	51, 533
BstNSI	RCATGY	4 cut(s)	278, 328, 648, 759
BstSCI	CCNGG	3 cut(s)	49, 396, 531
BstSFI	CTRYAG	2 cut(s)	279, 456
BstV1I	GCAGC	5 cut(s)	265, 271, 293, 660, 757
BstX2I	RGATCY	3 cut(s)	528, 625, 730
BstXI	CCANNNNNNTGG	1 cut(s)	607
BstYI	RGATCY	3 cut(s)	528, 625, 730
Bsu36I	CCTNAGG	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	218, 793
BtgI	CCRYGG	1 cut(s)	734
BtsCI	GGATG	3 cut(s)	237, 541, 616
BtsI	GCAGTG	1 cut(s)	545
BtsIMutI	CAGTG	3 cut(s)	113, 295, 545
Cac8I	GCNNGC	1 cut(s)	695
Cfr13I	GGNCC	1 cut(s)	679
DdeI	CTNAG	2 cut(s)	227, 371
DpnI	GATC	5 cut(s)	411, 530, 627, 732, 784
DpnII	GATC	5 cut(s)	409, 528, 625, 730, 782
DraI	TTTAAA	1 cut(s)	156
EaeI	YGGCCR	2 cut(s)	216, 791
Eco130I	CCWWGG	1 cut(s)	734
Eco24I	GRGCYC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	552
Eco81I	CCTNAGG	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	679
EcoRI	GAATTC	1 cut(s)	109
EcoRII	CCWGG	2 cut(s)	49, 531
EcoT14I	CCWWGG	1 cut(s)	734
EcoT38I	GRGCYC	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	734
FaqI	GGGAC	1 cut(s)	692
Fnu4HI	GCNGC	5 cut(s)	279, 282, 285, 649, 746
FokI	GGATG	3 cut(s)	244, 548, 623
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	5 cut(s)	279, 282, 285, 649, 746
FspBI	CTAG	5 cut(s)	24, 194, 267, 413, 683
GluI	GCNGC	5 cut(s)	279, 282, 285, 649, 746
GsuI	CTGGAG	1 cut(s)	362
HaeIII	GGCC	2 cut(s)	218, 793
HapII	CCGG	3 cut(s)	397, 742, 794
HincII	GTYRAC	2 cut(s)	642, 670
HindII	GTYRAC	2 cut(s)	642, 670
HinfI	GANTC	4 cut(s)	375, 440, 596, 812
HpaI	GTTAAC	1 cut(s)	670
HpaII	CCGG	3 cut(s)	397, 742, 794
HphI	GGTGA	3 cut(s)	155, 165, 508
Hpy166II	GTNNAC	3 cut(s)	502, 642, 670
Hpy188I	TCNGA	4 cut(s)	17, 445, 817, 826
Hpy188III	TCNNGA	6 cut(s)	62, 93, 413, 437, 629, 786
Hpy8I	GTNNAC	3 cut(s)	502, 642, 670
Hpy99I	CGWCG	1 cut(s)	821
HpyAV	CCTTC	2 cut(s)	342, 616
HpyCH4III	ACNGT	3 cut(s)	133, 360, 821
HpyCH4V	TGCA	9 cut(s)	239, 281, 322, 347, 550, 648, 706, 726, 768
HpyF3I	CTNAG	2 cut(s)	227, 371
KspAI	GTTAAC	1 cut(s)	670
Kzo9I	GATC	5 cut(s)	409, 528, 625, 730, 782
LmnI	GCTCC	2 cut(s)	661, 744
Lsp1109I	GCAGC	5 cut(s)	265, 271, 293, 660, 757
LweI	GCATC	2 cut(s)	566, 715
MaeI	CTAG	5 cut(s)	24, 194, 267, 413, 683
MaeIII	GTNAC	4 cut(s)	127, 171, 360, 514
MalI	GATC	5 cut(s)	411, 530, 627, 732, 784
MboI	GATC	5 cut(s)	409, 528, 625, 730, 782
MboII	GAAGA	2 cut(s)	558, 644
MflI	RGATCY	3 cut(s)	528, 625, 730
MhlI	GDGCHC	2 cut(s)	274, 436
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	3 cut(s)	109, 178, 770
MluNI	TGGCCA	1 cut(s)	218
MlyI	GAGTC	3 cut(s)	369, 434, 590
MnlI	CCTC	9 cut(s)	11, 222, 347, 423, 463, 469, 472, 608, 668
Mox20I	TGGCCA	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	4 cut(s)	155, 300, 486, 669
Msp20I	TGGCCA	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	3 cut(s)	397, 742, 794
MspR9I	CCNGG	3 cut(s)	51, 398, 533
MvaI	CCWGG	2 cut(s)	51, 533
NciI	CCSGG	1 cut(s)	398
NcoI	CCATGG	1 cut(s)	734
NdeII	GATC	5 cut(s)	409, 528, 625, 730, 782
NlaIV	GGNNCC	3 cut(s)	627, 680, 740
NmuCI	GTSAC	3 cut(s)	127, 171, 514
NspI	RCATGY	4 cut(s)	278, 328, 648, 759
PfeI	GAWTC	1 cut(s)	812
PfoI	TCCNGGA	2 cut(s)	49, 531
PkrI	GCNGC	5 cut(s)	280, 283, 286, 650, 747
PleI	GAGTC	3 cut(s)	369, 434, 590
PpsI	GAGTC	3 cut(s)	369, 434, 590
PpuMI	RGGWCCY	1 cut(s)	679
PshBI	ATTAAT	1 cut(s)	486
Psp5II	RGGWCCY	1 cut(s)	679
Psp6I	CCWGG	2 cut(s)	49, 531
PspGI	CCWGG	2 cut(s)	49, 531
PspN4I	GGNNCC	3 cut(s)	627, 680, 740
PspPI	GGNCC	1 cut(s)	679
PspPPI	RGGWCCY	1 cut(s)	679
PstI	CTGCAG	1 cut(s)	283
PsuI	RGATCY	3 cut(s)	528, 625, 730
PvuII	CAGCTG	1 cut(s)	284
SaqAI	TTAA	4 cut(s)	155, 300, 486, 669
SatI	GCNGC	5 cut(s)	279, 282, 285, 649, 746
Sau3AI	GATC	5 cut(s)	409, 528, 625, 730, 782
Sau96I	GGNCC	1 cut(s)	679
SchI	GAGTC	3 cut(s)	369, 434, 590
ScrFI	CCNGG	3 cut(s)	51, 398, 533
SduI	GDGCHC	2 cut(s)	274, 436
SetI	ASST	8 cut(s)	286, 334, 343, 499, 585, 684, 695, 781
SfaNI	GCATC	2 cut(s)	566, 715
SfcI	CTRYAG	2 cut(s)	279, 456
SinI	GGWCC	1 cut(s)	679
Sse9I	AATT	3 cut(s)	109, 178, 770
SspMI	CTAG	5 cut(s)	24, 194, 267, 413, 683
StyD4I	CCNGG	3 cut(s)	49, 396, 531
StyI	CCWWGG	1 cut(s)	734
TaaI	ACNGT	3 cut(s)	133, 360, 821
TaqI	TCGA	1 cut(s)	94
TasI	AATT	3 cut(s)	109, 178, 770
TfiI	GAWTC	1 cut(s)	812
Tru1I	TTAA	4 cut(s)	155, 300, 486, 669
Tru9I	TTAA	4 cut(s)	155, 300, 486, 669
TscAI	CASTG	3 cut(s)	120, 295, 552
TseFI	GTSAC	3 cut(s)	127, 171, 514
TseI	GCWGC	5 cut(s)	278, 281, 284, 648, 745
Tsp45I	GTSAC	3 cut(s)	127, 171, 514
TspDTI	ATGAA	4 cut(s)	74, 136, 531, 635
TspGWI	ACGGA	2 cut(s)	323, 687
TspRI	CASTG	3 cut(s)	120, 295, 552
VpaK11BI	GGWCC	1 cut(s)	679
VspI	ATTAAT	1 cut(s)	486
XapI	RAATTY	3 cut(s)	109, 178, 770
XbaI	TCTAGA	1 cut(s)	412
XceI	RCATGY	4 cut(s)	278, 328, 648, 759
XspI	CTAG	5 cut(s)	24, 194, 267, 413, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.