E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G55530 |
| fragaria_vesca | FvH4_7g22830 FvH4_7g22830 |
| malus_domestica | MD01G1136500.v1.1 MD07G1201500.v1.1 MD11G1096300.v1.1 |
| prunus_persica | Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1 |
| pyrus_communis | pycom01g15720 pycom07g18850 pycom11g08160 |
| rosa_chinensis | RchiOBHm_Chr1g0367981 |
| rosa_laevigata | RLG00000027249 |
| rosa_multiflora | Rmu_co8208940.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00288980 |
| rosa_rugosa | Rorug01G0338200 Rorug01G0338200 Rorug01G0338200 Rorug01G0338300 |
| rosa_samantha | Rh1AG345000 Rh1BG307200 Rh1CG322800 Rh1DG339300 |
| rosa_wichuraiana | Rw1G030700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 59 |
| AarI | CACCTGC | 1 cut(s) | 577 |
| Acc16I | TGCGCA | 1 cut(s) | 80 |
| Acc36I | ACCTGC | 1 cut(s) | 577 |
| AccB1I | GGYRCC | 2 cut(s) | 357, 514 |
| AccBSI | CCGCTC | 1 cut(s) | 67 |
| AccI | GTMKAC | 1 cut(s) | 594 |
| AciI | CCGC | 4 cut(s) | 29, 67, 316, 679 |
| AclWI | GGATC | 2 cut(s) | 716, 781 |
| AcoI | YGGCCR | 1 cut(s) | 301 |
| AcsI | RAATTY | 4 cut(s) | 53, 178, 401, 761 |
| AcuI | CTGAAG | 2 cut(s) | 362, 546 |
| AcyI | GRCGYC | 1 cut(s) | 358 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 530 |
| AflIII | ACRYGT | 1 cut(s) | 242 |
| AgsI | TTSAA | 2 cut(s) | 257, 365 |
| AjnI | CCWGG | 3 cut(s) | 23, 517, 648 |
| AluBI | AGCT | 6 cut(s) | 260, 382, 434, 461, 554, 800 |
| AluI | AGCT | 6 cut(s) | 260, 382, 434, 461, 554, 800 |
| Alw21I | GWGCWC | 2 cut(s) | 436, 611 |
| AlwI | GGATC | 2 cut(s) | 716, 781 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 569 |
| AoxI | GGCC | 2 cut(s) | 301, 367 |
| ApeKI | GCWGC | 4 cut(s) | 281, 458, 681, 736 |
| ApoI | RAATTY | 4 cut(s) | 53, 178, 401, 761 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 386, 418 |
| AspLEI | GCGC | 2 cut(s) | 81, 360 |
| AspS9I | GGNCC | 2 cut(s) | 499, 521 |
| AsuC2I | CCSGG | 3 cut(s) | 17, 50, 398 |
| AsuHPI | GGTGA | 1 cut(s) | 165 |
| AvaII | GGWCC | 2 cut(s) | 499, 521 |
| AxyI | CCTNAGG | 1 cut(s) | 371 |
| BalI | TGGCCA | 1 cut(s) | 303 |
| BanI | GGYRCC | 2 cut(s) | 357, 514 |
| BanII | GRGCYC | 1 cut(s) | 436 |
| BbsI | GAAGAC | 1 cut(s) | 287 |
| Bbv12I | GWGCWC | 2 cut(s) | 436, 611 |
| BbvCI | CCTCAGC | 1 cut(s) | 731 |
| BbvI | GCAGC | 4 cut(s) | 293, 470, 693, 748 |
| BccI | CCATC | 2 cut(s) | 208, 340 |
| BciT130I | CCWGG | 3 cut(s) | 25, 519, 650 |
| BcnI | CCSGG | 3 cut(s) | 17, 50, 398 |
| BfaI | CTAG | 4 cut(s) | 194, 344, 413, 711 |
| BfoI | RGCGCY | 1 cut(s) | 361 |
| BfuAI | ACCTGC | 1 cut(s) | 577 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 366 |
| BisI | GCNGC | 5 cut(s) | 68, 282, 459, 682, 737 |
| BlsI | GCNGC | 5 cut(s) | 69, 283, 460, 683, 738 |
| Bme1390I | CCNGG | 6 cut(s) | 17, 25, 50, 398, 519, 650 |
| Bme18I | GGWCC | 2 cut(s) | 499, 521 |
| BmgT120I | GGNCC | 2 cut(s) | 499, 521 |
| BmiI | GGNNCC | 4 cut(s) | 22, 359, 516, 745 |
| BmrFI | CCNGG | 6 cut(s) | 17, 25, 50, 398, 519, 650 |
| BmsI | GCATC | 2 cut(s) | 706, 799 |
| BpiI | GAAGAC | 1 cut(s) | 287 |
| BpmI | CTGGAG | 1 cut(s) | 671 |
| Bpu10I | CCTNAGC | 1 cut(s) | 731 |
| BpuEI | CTTGAG | 1 cut(s) | 246 |
| BpuMI | CCSGG | 3 cut(s) | 17, 50, 398 |
| Bsa29I | ATCGAT | 1 cut(s) | 335 |
| BsaHI | GRCGYC | 1 cut(s) | 358 |
| BsaJI | CCNNGG | 3 cut(s) | 16, 24, 725 |
| BsaWI | WCCGGW | 2 cut(s) | 496, 751 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 530 |
| Bse21I | CCTNAGG | 1 cut(s) | 371 |
| BseBI | CCWGG | 3 cut(s) | 25, 519, 650 |
| BseCI | ATCGAT | 1 cut(s) | 335 |
| BseDI | CCNNGG | 3 cut(s) | 16, 24, 725 |
| BseGI | GGATG | 3 cut(s) | 85, 237, 814 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 530 |
| BseMII | CTCAG | 3 cut(s) | 385, 564, 722 |
| BseXI | GCAGC | 4 cut(s) | 293, 470, 693, 748 |
| BsgI | GTGCAG | 1 cut(s) | 93 |
| BshFI | GGCC | 2 cut(s) | 303, 369 |
| BshNI | GGYRCC | 2 cut(s) | 357, 514 |
| BshVI | ATCGAT | 1 cut(s) | 335 |
| BsiHKAI | GWGCWC | 2 cut(s) | 436, 611 |
| BsiSI | CCGG | 5 cut(s) | 16, 50, 397, 497, 752 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 530 |
| BsmI | GAATGC | 1 cut(s) | 81 |
| BsnI | GGCC | 2 cut(s) | 303, 369 |
| Bsp1286I | GDGCHC | 2 cut(s) | 436, 611 |
| Bsp143I | GATC | 2 cut(s) | 721, 773 |
| Bsp19I | CCATGG | 1 cut(s) | 725 |
| BspACI | CCGC | 4 cut(s) | 29, 67, 316, 679 |
| BspANI | GGCC | 2 cut(s) | 303, 369 |
| BspCNI | CTCAG | 3 cut(s) | 384, 565, 723 |
| BspDI | ATCGAT | 1 cut(s) | 335 |
| BspHI | TCATGA | 1 cut(s) | 147 |
| BspLI | GGNNCC | 4 cut(s) | 22, 359, 516, 745 |
| BspMI | ACCTGC | 1 cut(s) | 577 |
| BspPI | GGATC | 2 cut(s) | 716, 781 |
| BspQI | GCTCTTC | 1 cut(s) | 498 |
| BspT107I | GGYRCC | 2 cut(s) | 357, 514 |
| BsrBI | CCGCTC | 1 cut(s) | 67 |
| BssECI | CCNNGG | 3 cut(s) | 16, 24, 725 |
| BssMI | GATC | 2 cut(s) | 721, 773 |
| BssNI | GRCGYC | 1 cut(s) | 358 |
| BssT1I | CCWWGG | 1 cut(s) | 725 |
| Bst2UI | CCWGG | 3 cut(s) | 25, 519, 650 |
| Bst4CI | ACNGT | 4 cut(s) | 133, 592, 601, 664 |
| Bst6I | CTCTTC | 2 cut(s) | 474, 498 |
| BstACI | GRCGYC | 1 cut(s) | 358 |
| BstC8I | GCNNGC | 4 cut(s) | 72, 384, 432, 695 |
| BstDEI | CTNAG | 3 cut(s) | 371, 573, 731 |
| BstDSI | CCRYGG | 1 cut(s) | 725 |
| BstF5I | GGATG | 3 cut(s) | 85, 237, 814 |
| BstH2I | RGCGCY | 1 cut(s) | 361 |
| BstHHI | GCGC | 2 cut(s) | 81, 360 |
| BstKTI | GATC | 2 cut(s) | 724, 776 |
| BstMBI | GATC | 2 cut(s) | 721, 773 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 76, 278, 366, 690, 736 |
| BstNI | CCWGG | 3 cut(s) | 25, 519, 650 |
| BstNSI | RCATGY | 1 cut(s) | 246 |
| BstSCI | CCNGG | 6 cut(s) | 15, 23, 48, 396, 517, 648 |
| BstV1I | GCAGC | 4 cut(s) | 293, 470, 693, 748 |
| BstV2I | GAAGAC | 1 cut(s) | 287 |
| Bsu15I | ATCGAT | 1 cut(s) | 335 |
| Bsu36I | CCTNAGG | 1 cut(s) | 371 |
| BsuRI | GGCC | 2 cut(s) | 303, 369 |
| BsuTUI | ATCGAT | 1 cut(s) | 335 |
| BtgI | CCRYGG | 1 cut(s) | 725 |
| BtsCI | GGATG | 3 cut(s) | 85, 237, 814 |
| BtsI | GCAGTG | 2 cut(s) | 81, 624 |
| BtsIMutI | CAGTG | 2 cut(s) | 81, 624 |
| BveI | ACCTGC | 1 cut(s) | 577 |
| Cac8I | GCNNGC | 4 cut(s) | 72, 384, 432, 695 |
| CaiI | CAGNNNCTG | 1 cut(s) | 569 |
| CciI | TCATGA | 1 cut(s) | 147 |
| CfoI | GCGC | 2 cut(s) | 81, 360 |
| Cfr13I | GGNCC | 2 cut(s) | 499, 521 |
| ClaI | ATCGAT | 1 cut(s) | 335 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 600, 635 |
| CviAII | CATG | 8 cut(s) | 148, 243, 275, 690, 707, 726, 785, 820 |
| DdeI | CTNAG | 3 cut(s) | 371, 573, 731 |
| DinI | GGCGCC | 1 cut(s) | 359 |
| DpnI | GATC | 2 cut(s) | 723, 775 |
| DpnII | GATC | 2 cut(s) | 721, 773 |
| EaeI | YGGCCR | 1 cut(s) | 301 |
| Eam1104I | CTCTTC | 2 cut(s) | 474, 498 |
| EarI | CTCTTC | 2 cut(s) | 474, 498 |
| EciI | GGCGGA | 1 cut(s) | 44 |
| Ecl136II | GAGCTC | 1 cut(s) | 434 |
| Eco130I | CCWWGG | 1 cut(s) | 725 |
| Eco147I | AGGCCT | 1 cut(s) | 369 |
| Eco24I | GRGCYC | 1 cut(s) | 436 |
| Eco32I | GATATC | 1 cut(s) | 34 |
| Eco47I | GGWCC | 2 cut(s) | 499, 521 |
| Eco53kI | GAGCTC | 1 cut(s) | 434 |
| Eco57I | CTGAAG | 2 cut(s) | 362, 546 |
| Eco81I | CCTNAGG | 1 cut(s) | 371 |
| EcoICRI | GAGCTC | 1 cut(s) | 434 |
| EcoO109I | RGGNCCY | 1 cut(s) | 521 |
| EcoRII | CCWGG | 3 cut(s) | 23, 517, 648 |
| EcoRV | GATATC | 1 cut(s) | 34 |
| EcoT14I | CCWWGG | 1 cut(s) | 725 |
| EcoT38I | GRGCYC | 1 cut(s) | 436 |
| EgeI | GGCGCC | 1 cut(s) | 359 |
| EheI | GGCGCC | 1 cut(s) | 359 |
| ErhI | CCWWGG | 1 cut(s) | 725 |
| FaeI | CATG | 8 cut(s) | 151, 246, 278, 693, 710, 729, 788, 823 |
| FatI | CATG | 8 cut(s) | 147, 242, 274, 689, 706, 725, 784, 819 |
| FauNDI | CATATG | 1 cut(s) | 324 |
| FblI | GTMKAC | 1 cut(s) | 594 |
| Fnu4HI | GCNGC | 5 cut(s) | 68, 282, 459, 682, 737 |
| FokI | GGATG | 3 cut(s) | 72, 244, 821 |
| FriOI | GRGCYC | 1 cut(s) | 436 |
| Fsp4HI | GCNGC | 5 cut(s) | 68, 282, 459, 682, 737 |
| FspAI | RTGCGCAY | 1 cut(s) | 80 |
| FspBI | CTAG | 4 cut(s) | 194, 344, 413, 711 |
| FspI | TGCGCA | 1 cut(s) | 80 |
| GlaI | GCGC | 2 cut(s) | 80, 359 |
| GluI | GCNGC | 5 cut(s) | 68, 282, 459, 682, 737 |
| GsuI | CTGGAG | 1 cut(s) | 671 |
| HaeII | RGCGCY | 1 cut(s) | 361 |
| HaeIII | GGCC | 2 cut(s) | 303, 369 |
| HapII | CCGG | 5 cut(s) | 16, 50, 397, 497, 752 |
| HhaI | GCGC | 2 cut(s) | 81, 360 |
| Hin1I | GRCGYC | 1 cut(s) | 358 |
| Hin1II | CATG | 8 cut(s) | 151, 246, 278, 693, 710, 729, 788, 823 |
| Hin6I | GCGC | 2 cut(s) | 79, 358 |
| HinP1I | GCGC | 2 cut(s) | 79, 358 |
| HincII | GTYRAC | 2 cut(s) | 248, 595 |
| HindII | GTYRAC | 2 cut(s) | 248, 595 |
| HindIII | AAGCTT | 1 cut(s) | 552 |
| HinfI | GANTC | 2 cut(s) | 45, 440 |
| HpaII | CCGG | 5 cut(s) | 16, 50, 397, 497, 752 |
| HphI | GGTGA | 1 cut(s) | 165 |
| Hpy166II | GTNNAC | 2 cut(s) | 248, 595 |
| Hpy188I | TCNGA | 2 cut(s) | 445, 767 |
| Hpy188III | TCNNGA | 3 cut(s) | 148, 392, 437 |
| Hpy8I | GTNNAC | 2 cut(s) | 248, 595 |
| HpyAV | CCTTC | 2 cut(s) | 371, 695 |
| HpyCH4III | ACNGT | 4 cut(s) | 133, 592, 601, 664 |
| HpyCH4V | TGCA | 8 cut(s) | 74, 239, 281, 322, 386, 547, 697, 717 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 76, 278, 366, 690, 736 |
| HpyF3I | CTNAG | 3 cut(s) | 371, 573, 731 |
| Hsp92I | GRCGYC | 1 cut(s) | 358 |
| Hsp92II | CATG | 8 cut(s) | 151, 246, 278, 693, 710, 729, 788, 823 |
| HspAI | GCGC | 2 cut(s) | 79, 358 |
| KasI | GGCGCC | 1 cut(s) | 357 |
| Kzo9I | GATC | 2 cut(s) | 721, 773 |
| LguI | GCTCTTC | 1 cut(s) | 498 |
| LmnI | GCTCC | 2 cut(s) | 606, 652 |
| Lsp1109I | GCAGC | 4 cut(s) | 293, 470, 693, 748 |
| LweI | GCATC | 2 cut(s) | 706, 799 |
| MaeI | CTAG | 4 cut(s) | 194, 344, 413, 711 |
| MaeIII | GTNAC | 3 cut(s) | 127, 171, 658 |
| MalI | GATC | 2 cut(s) | 723, 775 |
| MbiI | CCGCTC | 1 cut(s) | 67 |
| MboI | GATC | 2 cut(s) | 721, 773 |
| MboII | GAAGA | 7 cut(s) | 287, 456, 485, 491, 552, 589, 635 |
| MhlI | GDGCHC | 2 cut(s) | 436, 611 |
| MlsI | TGGCCA | 1 cut(s) | 303 |
| MluCI | AATT | 7 cut(s) | 53, 103, 178, 311, 401, 528, 761 |
| MluNI | TGGCCA | 1 cut(s) | 303 |
| Mly113I | GGCGCC | 1 cut(s) | 358 |
| MmeI | TCCRAC | 1 cut(s) | 132 |
| MnlI | CCTC | 5 cut(s) | 347, 380, 469, 534, 726 |
| Mox20I | TGGCCA | 1 cut(s) | 303 |
| MscI | TGGCCA | 1 cut(s) | 303 |
| MseI | TTAA | 2 cut(s) | 227, 826 |
| MslI | CAYNNNNRTG | 1 cut(s) | 789 |
| Msp20I | TGGCCA | 1 cut(s) | 303 |
| MspI | CCGG | 5 cut(s) | 16, 50, 397, 497, 752 |
| MspR9I | CCNGG | 6 cut(s) | 17, 25, 50, 398, 519, 650 |
| Mva1269I | GAATGC | 1 cut(s) | 81 |
| MvaI | CCWGG | 3 cut(s) | 25, 519, 650 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 76, 278, 366, 690, 736 |
| NarI | GGCGCC | 1 cut(s) | 358 |
| NciI | CCSGG | 3 cut(s) | 17, 50, 398 |
| NcoI | CCATGG | 1 cut(s) | 725 |
| NdeI | CATATG | 1 cut(s) | 324 |
| NdeII | GATC | 2 cut(s) | 721, 773 |
| NlaIII | CATG | 8 cut(s) | 151, 246, 278, 693, 710, 729, 788, 823 |
| NlaIV | GGNNCC | 4 cut(s) | 22, 359, 516, 745 |
| NmuCI | GTSAC | 2 cut(s) | 127, 171 |
| NsbI | TGCGCA | 1 cut(s) | 80 |
| NspI | RCATGY | 1 cut(s) | 246 |
| PagI | TCATGA | 1 cut(s) | 147 |
| PaqCI | CACCTGC | 1 cut(s) | 577 |
| PceI | AGGCCT | 1 cut(s) | 369 |
| PciI | ACATGT | 1 cut(s) | 242 |
| PciSI | GCTCTTC | 1 cut(s) | 498 |
| PctI | GAATGC | 1 cut(s) | 81 |
| PfeI | GAWTC | 2 cut(s) | 45, 440 |
| PfoI | TCCNGGA | 1 cut(s) | 48 |
| PkrI | GCNGC | 5 cut(s) | 69, 283, 460, 683, 738 |
| PluTI | GGCGCC | 1 cut(s) | 361 |
| PpuMI | RGGWCCY | 1 cut(s) | 521 |
| PscI | ACATGT | 1 cut(s) | 242 |
| PsiI | TTATAA | 1 cut(s) | 59 |
| Psp124BI | GAGCTC | 1 cut(s) | 436 |
| Psp5II | RGGWCCY | 1 cut(s) | 521 |
| Psp6I | CCWGG | 3 cut(s) | 23, 517, 648 |
| PspGI | CCWGG | 3 cut(s) | 23, 517, 648 |
| PspN4I | GGNNCC | 4 cut(s) | 22, 359, 516, 745 |
| PspPI | GGNCC | 2 cut(s) | 499, 521 |
| PspPPI | RGGWCCY | 1 cut(s) | 521 |
| PstNI | CAGNNNCTG | 1 cut(s) | 569 |
| RseI | CAYNNNNRTG | 1 cut(s) | 789 |
| SacI | GAGCTC | 1 cut(s) | 436 |
| SalI | GTCGAC | 1 cut(s) | 593 |
| SapI | GCTCTTC | 1 cut(s) | 498 |
| SaqAI | TTAA | 2 cut(s) | 227, 826 |
| SatI | GCNGC | 5 cut(s) | 68, 282, 459, 682, 737 |
| Sau3AI | GATC | 2 cut(s) | 721, 773 |
| Sau96I | GGNCC | 2 cut(s) | 499, 521 |
| ScrFI | CCNGG | 6 cut(s) | 17, 25, 50, 398, 519, 650 |
| SduI | GDGCHC | 2 cut(s) | 436, 611 |
| SfaNI | GCATC | 2 cut(s) | 706, 799 |
| SfoI | GGCGCC | 1 cut(s) | 359 |
| SinI | GGWCC | 2 cut(s) | 499, 521 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 789 |
| SmlI | CTYRAG | 1 cut(s) | 261 |
| SmoI | CTYRAG | 1 cut(s) | 261 |
| Sse9I | AATT | 7 cut(s) | 53, 103, 178, 311, 401, 528, 761 |
| SseBI | AGGCCT | 1 cut(s) | 369 |
| SsiI | CCGC | 4 cut(s) | 29, 67, 316, 679 |
| SspDI | GGCGCC | 1 cut(s) | 357 |
| SspMI | CTAG | 4 cut(s) | 194, 344, 413, 711 |
| SstI | GAGCTC | 1 cut(s) | 436 |
| StuI | AGGCCT | 1 cut(s) | 369 |
| StyD4I | CCNGG | 6 cut(s) | 15, 23, 48, 396, 517, 648 |
| StyI | CCWWGG | 1 cut(s) | 725 |
| TaaI | ACNGT | 4 cut(s) | 133, 592, 601, 664 |
| TaqI | TCGA | 3 cut(s) | 36, 335, 594 |
| TasI | AATT | 7 cut(s) | 53, 103, 178, 311, 401, 528, 761 |
| TauI | GCSGC | 1 cut(s) | 70 |
| TfiI | GAWTC | 2 cut(s) | 45, 440 |
| Tru1I | TTAA | 2 cut(s) | 227, 826 |
| Tru9I | TTAA | 2 cut(s) | 227, 826 |
| TscAI | CASTG | 2 cut(s) | 81, 624 |
| TseFI | GTSAC | 2 cut(s) | 127, 171 |
| TseI | GCWGC | 4 cut(s) | 281, 458, 681, 736 |
| Tsp45I | GTSAC | 2 cut(s) | 127, 171 |
| TspDTI | ATGAA | 7 cut(s) | 74, 136, 435, 528, 546, 642, 801 |
| TspGWI | ACGGA | 1 cut(s) | 821 |
| TspRI | CASTG | 2 cut(s) | 81, 624 |
| VpaK11BI | GGWCC | 2 cut(s) | 499, 521 |
| XapI | RAATTY | 4 cut(s) | 53, 178, 401, 761 |
| XceI | RCATGY | 1 cut(s) | 246 |
| XmiI | GTMKAC | 1 cut(s) | 594 |
| XspI | CTAG | 4 cut(s) | 194, 344, 413, 711 |