Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005097

Physical Location & Seq

Genomic Coordinates Reverse (-)

58097719 .. 58100797

Gene Structure 3079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG345000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAGTTTTGTTTTCCGGGGGACAAGAGGCGATATTGAGAGTGGGTTTCCCGAATTCATACCAGAGCGGCGCGCAATGCGTGTTCATACAGCACGCTCTGTCAATTCCAACTCACTTGCTTTTCTCGTCACAGTTCTACTGCTATTTATGATACTGAATTCGCACCAAATGTCTCCTAATTTCCTGCTGTGGCTAGTCCTCGGGGTTTTTTTGATGGCCACAACGTTAAGGATGTATGCAACCTGTCAACAGCTGCAAGCTCAAGCACAGGCTCATGCAGCAGCCGCCAGTGGCCTTCTTGGTCATACTGAATTGCGGTTGCATATGCCACCATCCATAGCACTAGCAACAAGAGGCCGCCTTCAAGGTCTCAGGCTTCAGCTTGCACTTCTTGACCGTGAATTTGATGACCTAGATTATGAAACTTTGCGAGCTCTGGACTCCGACAATGTTCCATCAGCATCTTCTATGAGTGAGGAAGAGATAAATGCTCTTCCTGTCCACAAATATAAAGTTGCGGGTCCTCAAAATGGTACCTCATTGACGCAACAAGCTTCAACCTCAGTACCTGCTGAGAAGAAGCAAGAAACTGCTGATGTTGGGAGCACCAAAGCCATTGAAGATGAACTGACCTGTAGTGTCTGCTTGGAGCAAGTTAACACGGGGGAACTCATCCGCAGCCTTCCCTGCTTGCATCAGGTTCAGTTTCTTTTTCCTTCGACTCATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0031984 GO:0032446 GO:0033993 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0098827 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

243

Amino Acids

26.77

Weight (kDa)

5.89

Isoelectric Point (pI)

58.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55530
fragaria_vesca	FvH4_7g22830 FvH4_7g22830
malus_domestica	MD01G1136500.v1.1 MD07G1201500.v1.1 MD11G1096300.v1.1
prunus_persica	Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1
pyrus_communis	pycom01g15720 pycom07g18850 pycom11g08160
rosa_chinensis	RchiOBHm_Chr1g0367981
rosa_laevigata	RLG00000027249
rosa_multiflora	Rmu_co8208940.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288980
rosa_rugosa	Rorug01G0338200 Rorug01G0338200 Rorug01G0338200 Rorug01G0338300
rosa_samantha	Rh1AG345000 Rh1BG307200 Rh1CG322800 Rh1DG339300
rosa_wichuraiana	Rw1G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	577
Acc65I	GGTACC	1 cut(s)	533
AccB1I	GGYRCC	1 cut(s)	533
AccBSI	CCGCTC	1 cut(s)	67
AccII	CGCG	1 cut(s)	72
AciI	CCGC	6 cut(s)	67, 285, 316, 358, 518, 676
AclI	AACGTT	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	216
AcsI	RAATTY	3 cut(s)	53, 157, 401
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	2 cut(s)	535, 567
AfiI	CCNNNNNNNGG	1 cut(s)	530
AgsI	TTSAA	3 cut(s)	365, 558, 620
AluBI	AGCT	5 cut(s)	253, 260, 382, 434, 554
AluI	AGCT	5 cut(s)	253, 260, 382, 434, 554
Alw21I	GWGCWC	2 cut(s)	436, 608
Alw26I	GTCTC	2 cut(s)	177, 374
AlwNI	CAGNNNCTG	1 cut(s)	569
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	3 cut(s)	216, 292, 355
ApeKI	GCWGC	4 cut(s)	253, 278, 281, 678
ApoI	RAATTY	3 cut(s)	53, 157, 401
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
Asp718I	GGTACC	1 cut(s)	533
AspLEI	GCGC	2 cut(s)	72, 74
AspS9I	GGNCC	1 cut(s)	521
AsuC2I	CCSGG	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	521
BaeI	ACNNNNGTAYC	2 cut(s)	549, 582
BalI	TGGCCA	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	533
BanII	GRGCYC	1 cut(s)	436
Bbv12I	GWGCWC	2 cut(s)	436, 608
BbvI	GCAGC	4 cut(s)	240, 290, 293, 690
BccI	CCATC	3 cut(s)	208, 340, 463
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	2 cut(s)	177, 374
BfaI	CTAG	3 cut(s)	194, 344, 413
BfmI	CTRYAG	1 cut(s)	634
BfuAI	ACCTGC	1 cut(s)	577
BisI	GCNGC	7 cut(s)	68, 254, 279, 282, 285, 358, 679
BlsI	GCNGC	7 cut(s)	69, 255, 280, 283, 286, 359, 680
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	521
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	522, 535
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	2 cut(s)	470, 703
BpuEI	CTTGAG	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	16, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	530
Bse1I	ACTGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	16, 199
BseGI	GGATG	3 cut(s)	237, 332, 672
BseLI	CCNNNNNNNGG	1 cut(s)	530
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	3 cut(s)	385, 564, 576
BseNI	ACTGG	1 cut(s)	288
BsePI	GCGCGC	1 cut(s)	70
BseXI	GCAGC	4 cut(s)	240, 290, 293, 690
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	3 cut(s)	218, 294, 357
BshNI	GGYRCC	1 cut(s)	533
BsiHKAI	GWGCWC	2 cut(s)	436, 608
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	530
BsmAI	GTCTC	2 cut(s)	177, 374
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	3 cut(s)	218, 294, 357
Bso31I	GGTCTC	1 cut(s)	374
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	436, 608
BspACI	CCGC	6 cut(s)	67, 285, 316, 358, 518, 676
BspANI	GGCC	3 cut(s)	218, 294, 357
BspCNI	CTCAG	3 cut(s)	384, 565, 575
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	522, 535
BspMI	ACCTGC	1 cut(s)	577
BspQI	GCTCTTC	1 cut(s)	498
BspT107I	GGYRCC	1 cut(s)	533
BspTNI	GGTCTC	1 cut(s)	374
BsrBI	CCGCTC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	16, 199
BssHII	GCGCGC	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	133, 398
Bst6I	CTCTTC	2 cut(s)	474, 498
BstC8I	GCNNGC	6 cut(s)	72, 94, 258, 384, 432, 692
BstDEI	CTNAG	3 cut(s)	371, 562, 573
BstF5I	GGATG	3 cut(s)	237, 332, 672
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	2 cut(s)	72, 74
BstMAI	GTCTC	2 cut(s)	177, 374
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 278, 284, 687
BstSCI	CCNGG	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	634
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	4 cut(s)	240, 290, 293, 690
BsuRI	GGCC	3 cut(s)	218, 294, 357
BtsCI	GGATG	3 cut(s)	237, 332, 672
BtsIMutI	CAGTG	1 cut(s)	295
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	6 cut(s)	72, 94, 258, 384, 432, 692
CaiI	CAGNNNCTG	1 cut(s)	569
CfoI	GCGC	2 cut(s)	72, 74
Cfr13I	GGNCC	1 cut(s)	521
CseI	GACGC	1 cut(s)	553
Csp6I	GTAC	2 cut(s)	534, 566
CviAII	CATG	1 cut(s)	275
CviQI	GTAC	2 cut(s)	534, 566
DdeI	CTNAG	3 cut(s)	371, 562, 573
EaeI	YGGCCR	1 cut(s)	216
Eam1104I	CTCTTC	2 cut(s)	474, 498
EarI	CTCTTC	2 cut(s)	474, 498
Ecl136II	GAGCTC	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	436
Eco31I	GGTCTC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	521
Eco53kI	GAGCTC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	200
EcoICRI	GAGCTC	1 cut(s)	434
EcoO109I	RGGNCCY	1 cut(s)	521
EcoRI	GAATTC	2 cut(s)	53, 157
EcoT38I	GRGCYC	1 cut(s)	436
FaeI	CATG	1 cut(s)	278
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	1 cut(s)	274
FauI	CCCGC	1 cut(s)	511
FauNDI	CATATG	1 cut(s)	324
Fnu4HI	GCNGC	7 cut(s)	68, 254, 279, 282, 285, 358, 679
FokI	GGATG	3 cut(s)	244, 319, 659
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	7 cut(s)	68, 254, 279, 282, 285, 358, 679
FspBI	CTAG	3 cut(s)	194, 344, 413
GlaI	GCGC	2 cut(s)	71, 73
GluI	GCNGC	7 cut(s)	68, 254, 279, 282, 285, 358, 679
HaeIII	GGCC	3 cut(s)	218, 294, 357
HapII	CCGG	1 cut(s)	16
HgaI	GACGC	1 cut(s)	553
HhaI	GCGC	2 cut(s)	72, 74
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	2 cut(s)	70, 72
HinP1I	GCGC	2 cut(s)	70, 72
HincII	GTYRAC	2 cut(s)	248, 658
HindII	GTYRAC	2 cut(s)	248, 658
HindIII	AAGCTT	1 cut(s)	552
HinfI	GANTC	2 cut(s)	440, 721
HpaI	GTTAAC	1 cut(s)	658
HpaII	CCGG	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	248, 502, 658
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	3 cut(s)	50, 392, 437
Hpy8I	GTNNAC	3 cut(s)	248, 502, 658
HpyAV	CCTTC	4 cut(s)	305, 371, 692, 726
HpyCH4III	ACNGT	2 cut(s)	133, 398
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	6 cut(s)	239, 256, 278, 322, 386, 694
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 278, 284, 687
HpyF3I	CTNAG	3 cut(s)	371, 562, 573
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	2 cut(s)	70, 72
KpnI	GGTACC	1 cut(s)	537
KspAI	GTTAAC	1 cut(s)	658
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	2 cut(s)	603, 649
Lsp1109I	GCAGC	4 cut(s)	240, 290, 293, 690
LweI	GCATC	2 cut(s)	470, 703
MaeI	CTAG	3 cut(s)	194, 344, 413
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	127
MbiI	CCGCTC	1 cut(s)	67
MboII	GAAGA	5 cut(s)	456, 485, 491, 589, 632
MhlI	GDGCHC	2 cut(s)	436, 608
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	6 cut(s)	53, 103, 157, 178, 311, 401
MluNI	TGGCCA	1 cut(s)	218
MlyI	GAGTC	2 cut(s)	434, 715
MmeI	TCCRAC	2 cut(s)	132, 468
MnlI	CCTC	7 cut(s)	20, 209, 347, 469, 534, 547, 571
Mox20I	TGGCCA	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	3 cut(s)	227, 657, 730
Msp20I	TGGCCA	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	253
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	4 cut(s)	76, 278, 284, 687
NciI	CCSGG	1 cut(s)	17
NdeI	CATATG	1 cut(s)	324
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	2 cut(s)	522, 535
NmuCI	GTSAC	1 cut(s)	127
PauI	GCGCGC	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	498
PkrI	GCNGC	7 cut(s)	69, 255, 280, 283, 286, 359, 680
PleI	GAGTC	2 cut(s)	434, 715
PpsI	GAGTC	2 cut(s)	434, 715
PpuMI	RGGWCCY	1 cut(s)	521
Psp124BI	GAGCTC	1 cut(s)	436
Psp1406I	AACGTT	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	521
PspN4I	GGNNCC	2 cut(s)	522, 535
PspPI	GGNCC	1 cut(s)	521
PspPPI	RGGWCCY	1 cut(s)	521
PstNI	CAGNNNCTG	1 cut(s)	569
PteI	GCGCGC	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	253
RsaI	GTAC	2 cut(s)	535, 567
RsaNI	GTAC	2 cut(s)	534, 566
SacI	GAGCTC	1 cut(s)	436
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	3 cut(s)	227, 657, 730
SatI	GCNGC	7 cut(s)	68, 254, 279, 282, 285, 358, 679
Sau96I	GGNCC	1 cut(s)	521
SchI	GAGTC	2 cut(s)	434, 715
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	2 cut(s)	436, 608
SfaNI	GCATC	2 cut(s)	470, 703
SfcI	CTRYAG	1 cut(s)	634
SinI	GGWCC	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	6 cut(s)	53, 103, 157, 178, 311, 401
SsiI	CCGC	6 cut(s)	67, 285, 316, 358, 518, 676
SspMI	CTAG	3 cut(s)	194, 344, 413
SstI	GAGCTC	1 cut(s)	436
StyD4I	CCNGG	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	133, 398
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	1 cut(s)	719
TasI	AATT	6 cut(s)	53, 103, 157, 178, 311, 401
TauI	GCSGC	3 cut(s)	70, 287, 360
Tru1I	TTAA	3 cut(s)	227, 657, 730
Tru9I	TTAA	3 cut(s)	227, 657, 730
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	4 cut(s)	253, 278, 281, 678
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	4 cut(s)	46, 74, 435, 639
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	3 cut(s)	53, 157, 401
XspI	CTAG	3 cut(s)	194, 344, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.