Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005097

Physical Location & Seq

Genomic Coordinates Reverse (-)

58654368 .. 58657262

Gene Structure 2895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G030700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAGTTTTGTTTTCCGGGGGACAAGAGGCGATATTGAGAGTGGGTTTCCCGAATTCATACCAGAGCGGCGCGCAATGCGTGTTCATACAGCACGCTCTGTCAATTCCAACTCACTTGCTTTTCTCGTCACAGTTCTACTGCTATTTATGATACTGAATTCGCACCAAATGTCTCCTAATTTCCTGCTGTGGCTAGTCCTCGGGGTTTTTTTGATGGCTACAACGTTAAGGATGTATGCAACCTGTCAACAGCTGCAAGCTCAAGCACAGGCTCATGCAGCAGCCGCCAGTGGCCTTCTTGGTCATACTGAATTGCGGTTGCATATGCCACCATCCATAGCACTAGCAACAAGAGGCCGCCTTCAAGGTCTCAGGCTTCAGCTTGCACTTCTTGACCGTGAATTTGATGACCTAGATTATGAAACTTTGCGAGCTCTGGATTCCGACAATGTTCCATCAGCATCTTCTATGAGTGAGGAAGAGATAAATGCTCTTCCTGTCCACAAATATAAAGTTGCGGGTCCTCAAAATGGTACCTCATTGACGCAACAAGCTTCAACCTCAGTACCTGCTGAGAAGAAGCAAGAAACTGCTGATGTTGGGAGCACTAAAGCCATTGAAGATGAACTGACCTGTAGTGTCTGCTTGGAGCAAGTTAACACGGGGGAGCTCATCCGCAGCCTTCCCTGCTTGCATCAGTTTCATGCTAGTTGCATTGACCCTTGGCTAAGGCAACAGGGAACATGCCCAGTGTGTAAATACAGAGCAGGTTCTGGATGGCATGAAAACGGACAAGGTGCAGCAATGGATGCTTCTTACATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0031984 GO:0032446 GO:0033993 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0098827 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

275

Amino Acids

30.24

Weight (kDa)

5.98

Isoelectric Point (pI)

57.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	211 - 253	1.7e-13	Ring finger domain
zf-C3HC4_2	PF13923	212 - 252	4e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	212 - 239	2.5e-08	RING-like zinc finger
zf-C3HC4	PF00097	212 - 252	2.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	228 - 253	1.9e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55530
fragaria_vesca	FvH4_7g22830 FvH4_7g22830
malus_domestica	MD01G1136500.v1.1 MD07G1201500.v1.1 MD11G1096300.v1.1
prunus_persica	Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1
pyrus_communis	pycom01g15720 pycom07g18850 pycom11g08160
rosa_chinensis	RchiOBHm_Chr1g0367981
rosa_laevigata	RLG00000027249
rosa_multiflora	Rmu_co8208940.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288980
rosa_rugosa	Rorug01G0338200 Rorug01G0338200 Rorug01G0338200 Rorug01G0338300
rosa_samantha	Rh1AG345000 Rh1BG307200 Rh1CG322800 Rh1DG339300
rosa_wichuraiana	Rw1G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	577, 758
Acc65I	GGTACC	1 cut(s)	533
AccB1I	GGYRCC	1 cut(s)	533
AccBSI	CCGCTC	1 cut(s)	67
AccII	CGCG	1 cut(s)	72
AciI	CCGC	6 cut(s)	67, 285, 316, 358, 518, 676
AclI	AACGTT	1 cut(s)	224
AcsI	RAATTY	3 cut(s)	53, 157, 401
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	2 cut(s)	535, 567
AfiI	CCNNNNNNNGG	1 cut(s)	530
AgsI	TTSAA	3 cut(s)	365, 558, 620
AluBI	AGCT	6 cut(s)	253, 260, 382, 434, 554, 670
AluI	AGCT	6 cut(s)	253, 260, 382, 434, 554, 670
Alw21I	GWGCWC	3 cut(s)	436, 608, 672
Alw26I	GTCTC	2 cut(s)	177, 374
AlwNI	CAGNNNCTG	2 cut(s)	569, 773
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	2 cut(s)	292, 355
ApeKI	GCWGC	5 cut(s)	253, 278, 281, 678, 800
ApoI	RAATTY	3 cut(s)	53, 157, 401
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
Asp718I	GGTACC	1 cut(s)	533
AspLEI	GCGC	2 cut(s)	72, 74
AspS9I	GGNCC	1 cut(s)	521
AsuC2I	CCSGG	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	521
BaeI	ACNNNNGTAYC	2 cut(s)	549, 582
BanI	GGYRCC	1 cut(s)	533
BanII	GRGCYC	2 cut(s)	436, 672
Bbv12I	GWGCWC	3 cut(s)	436, 608, 672
BbvI	GCAGC	5 cut(s)	240, 290, 293, 690, 812
BccI	CCATC	4 cut(s)	208, 340, 463, 771
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	2 cut(s)	177, 374
BfaI	CTAG	4 cut(s)	194, 344, 413, 708
BfmI	CTRYAG	1 cut(s)	634
BfuAI	ACCTGC	2 cut(s)	577, 758
BisI	GCNGC	8 cut(s)	68, 254, 279, 282, 285, 358, 679, 801
BlsI	GCNGC	8 cut(s)	69, 255, 280, 283, 286, 359, 680, 802
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	521
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	522, 535
BmrFI	CCNGG	1 cut(s)	17
BmrI	ACTGGG	1 cut(s)	743
BmsI	GCATC	3 cut(s)	470, 703, 799
BmuI	ACTGGG	1 cut(s)	743
Bpu10I	CCTNAGC	1 cut(s)	728
BpuEI	CTTGAG	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	3 cut(s)	16, 199, 722
Bsc4I	CCNNNNNNNGG	1 cut(s)	530
Bse1I	ACTGG	2 cut(s)	288, 749
Bse3DI	GCAATG	2 cut(s)	81, 810
BseDI	CCNNGG	3 cut(s)	16, 199, 722
BseGI	GGATG	5 cut(s)	237, 332, 672, 782, 814
BseLI	CCNNNNNNNGG	1 cut(s)	530
BseMI	GCAATG	2 cut(s)	81, 810
BseMII	CTCAG	3 cut(s)	385, 564, 576
BseNI	ACTGG	2 cut(s)	288, 749
BsePI	GCGCGC	1 cut(s)	70
BseXI	GCAGC	5 cut(s)	240, 290, 293, 690, 812
BsgI	GTGCAG	1 cut(s)	819
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	294, 357
BshNI	GGYRCC	1 cut(s)	533
BsiHKAI	GWGCWC	3 cut(s)	436, 608, 672
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	530
BsmAI	GTCTC	2 cut(s)	177, 374
BsmFI	GGGAC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	294, 357
Bso31I	GGTCTC	1 cut(s)	374
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	3 cut(s)	436, 608, 672
BspACI	CCGC	6 cut(s)	67, 285, 316, 358, 518, 676
BspANI	GGCC	2 cut(s)	294, 357
BspCNI	CTCAG	3 cut(s)	384, 565, 575
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	522, 535
BspMI	ACCTGC	2 cut(s)	577, 758
BspQI	GCTCTTC	1 cut(s)	498
BspT107I	GGYRCC	1 cut(s)	533
BspTNI	GGTCTC	1 cut(s)	374
BsrBI	CCGCTC	1 cut(s)	67
BsrDI	GCAATG	2 cut(s)	81, 810
BsrI	ACTGG	2 cut(s)	288, 749
BssECI	CCNNGG	3 cut(s)	16, 199, 722
BssHII	GCGCGC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	722
Bst4CI	ACNGT	2 cut(s)	133, 398
Bst6I	CTCTTC	2 cut(s)	474, 498
BstAPI	GCANNNNNTGC	1 cut(s)	809
BstC8I	GCNNGC	6 cut(s)	72, 94, 258, 384, 432, 692
BstDEI	CTNAG	4 cut(s)	371, 562, 573, 728
BstF5I	GGATG	5 cut(s)	237, 332, 672, 782, 814
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	2 cut(s)	72, 74
BstMAI	GTCTC	2 cut(s)	177, 374
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 278, 284, 687, 809
BstNSI	RCATGY	1 cut(s)	747
BstSCI	CCNGG	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	634
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	5 cut(s)	240, 290, 293, 690, 812
BsuRI	GGCC	2 cut(s)	294, 357
BtsCI	GGATG	5 cut(s)	237, 332, 672, 782, 814
BtsIMutI	CAGTG	2 cut(s)	295, 756
BveI	ACCTGC	2 cut(s)	577, 758
Cac8I	GCNNGC	6 cut(s)	72, 94, 258, 384, 432, 692
CaiI	CAGNNNCTG	2 cut(s)	569, 773
CfoI	GCGC	2 cut(s)	72, 74
Cfr13I	GGNCC	1 cut(s)	521
CseI	GACGC	1 cut(s)	553
Csp6I	GTAC	2 cut(s)	534, 566
CviAII	CATG	5 cut(s)	275, 704, 744, 782, 820
CviQI	GTAC	2 cut(s)	534, 566
DdeI	CTNAG	4 cut(s)	371, 562, 573, 728
Eam1104I	CTCTTC	2 cut(s)	474, 498
EarI	CTCTTC	2 cut(s)	474, 498
Ecl136II	GAGCTC	2 cut(s)	434, 670
Eco130I	CCWWGG	1 cut(s)	722
Eco24I	GRGCYC	2 cut(s)	436, 672
Eco31I	GGTCTC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	521
Eco53kI	GAGCTC	2 cut(s)	434, 670
Eco57I	CTGAAG	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	200
EcoICRI	GAGCTC	2 cut(s)	434, 670
EcoO109I	RGGNCCY	1 cut(s)	521
EcoRI	GAATTC	2 cut(s)	53, 157
EcoT14I	CCWWGG	1 cut(s)	722
EcoT38I	GRGCYC	2 cut(s)	436, 672
ErhI	CCWWGG	1 cut(s)	722
FaeI	CATG	5 cut(s)	278, 707, 747, 785, 823
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	5 cut(s)	274, 703, 743, 781, 819
FauI	CCCGC	1 cut(s)	511
FauNDI	CATATG	1 cut(s)	324
Fnu4HI	GCNGC	8 cut(s)	68, 254, 279, 282, 285, 358, 679, 801
FokI	GGATG	5 cut(s)	244, 319, 659, 789, 821
FriOI	GRGCYC	2 cut(s)	436, 672
Fsp4HI	GCNGC	8 cut(s)	68, 254, 279, 282, 285, 358, 679, 801
FspBI	CTAG	4 cut(s)	194, 344, 413, 708
GlaI	GCGC	2 cut(s)	71, 73
GluI	GCNGC	8 cut(s)	68, 254, 279, 282, 285, 358, 679, 801
HaeIII	GGCC	2 cut(s)	294, 357
HapII	CCGG	1 cut(s)	16
HgaI	GACGC	1 cut(s)	553
HhaI	GCGC	2 cut(s)	72, 74
Hin1II	CATG	5 cut(s)	278, 707, 747, 785, 823
Hin6I	GCGC	2 cut(s)	70, 72
HinP1I	GCGC	2 cut(s)	70, 72
HincII	GTYRAC	2 cut(s)	248, 658
HindII	GTYRAC	2 cut(s)	248, 658
HindIII	AAGCTT	1 cut(s)	552
HinfI	GANTC	1 cut(s)	440
HpaI	GTTAAC	1 cut(s)	658
HpaII	CCGG	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	248, 502, 658
Hpy188I	TCNGA	1 cut(s)	445
Hpy188III	TCNNGA	4 cut(s)	50, 392, 437, 774
Hpy8I	GTNNAC	3 cut(s)	248, 502, 658
HpyAV	CCTTC	3 cut(s)	305, 371, 692
HpyCH4III	ACNGT	2 cut(s)	133, 398
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	8 cut(s)	239, 256, 278, 322, 386, 694, 714, 800
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 278, 284, 687, 809
HpyF3I	CTNAG	4 cut(s)	371, 562, 573, 728
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	5 cut(s)	278, 707, 747, 785, 823
HspAI	GCGC	2 cut(s)	70, 72
KpnI	GGTACC	1 cut(s)	537
KspAI	GTTAAC	1 cut(s)	658
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	3 cut(s)	603, 649, 667
Lsp1109I	GCAGC	5 cut(s)	240, 290, 293, 690, 812
LweI	GCATC	3 cut(s)	470, 703, 799
MaeI	CTAG	4 cut(s)	194, 344, 413, 708
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	127
MbiI	CCGCTC	1 cut(s)	67
MboII	GAAGA	5 cut(s)	456, 485, 491, 589, 632
MhlI	GDGCHC	3 cut(s)	436, 608, 672
MluCI	AATT	6 cut(s)	53, 103, 157, 178, 311, 401
MmeI	TCCRAC	2 cut(s)	132, 468
MnlI	CCTC	7 cut(s)	20, 209, 347, 469, 534, 547, 571
MseI	TTAA	2 cut(s)	227, 657
MspA1I	CMGCKG	1 cut(s)	253
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	5 cut(s)	76, 278, 284, 687, 809
NciI	CCSGG	1 cut(s)	17
NdeI	CATATG	1 cut(s)	324
NlaIII	CATG	5 cut(s)	278, 707, 747, 785, 823
NlaIV	GGNNCC	2 cut(s)	522, 535
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	1 cut(s)	747
PauI	GCGCGC	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	440
PkrI	GCNGC	8 cut(s)	69, 255, 280, 283, 286, 359, 680, 802
PpuMI	RGGWCCY	1 cut(s)	521
Psp124BI	GAGCTC	2 cut(s)	436, 672
Psp1406I	AACGTT	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	521
PspN4I	GGNNCC	2 cut(s)	522, 535
PspPI	GGNCC	1 cut(s)	521
PspPPI	RGGWCCY	1 cut(s)	521
PstNI	CAGNNNCTG	2 cut(s)	569, 773
PteI	GCGCGC	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	253
RsaI	GTAC	2 cut(s)	535, 567
RsaNI	GTAC	2 cut(s)	534, 566
SacI	GAGCTC	2 cut(s)	436, 672
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	2 cut(s)	227, 657
SatI	GCNGC	8 cut(s)	68, 254, 279, 282, 285, 358, 679, 801
Sau96I	GGNCC	1 cut(s)	521
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	3 cut(s)	436, 608, 672
SfaNI	GCATC	3 cut(s)	470, 703, 799
SfcI	CTRYAG	1 cut(s)	634
SinI	GGWCC	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	6 cut(s)	53, 103, 157, 178, 311, 401
SsiI	CCGC	6 cut(s)	67, 285, 316, 358, 518, 676
SspMI	CTAG	4 cut(s)	194, 344, 413, 708
SstI	GAGCTC	2 cut(s)	436, 672
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	722
TaaI	ACNGT	2 cut(s)	133, 398
TaiI	ACGT	1 cut(s)	227
TasI	AATT	6 cut(s)	53, 103, 157, 178, 311, 401
TauI	GCSGC	3 cut(s)	70, 287, 360
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	2 cut(s)	227, 657
Tru9I	TTAA	2 cut(s)	227, 657
TscAI	CASTG	2 cut(s)	295, 756
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	5 cut(s)	253, 278, 281, 678, 800
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	6 cut(s)	46, 74, 435, 639, 692, 798
TspGWI	ACGGA	1 cut(s)	804
TspRI	CASTG	2 cut(s)	295, 756
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	3 cut(s)	53, 157, 401
XceI	RCATGY	1 cut(s)	747
XspI	CTAG	4 cut(s)	194, 344, 413, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.