Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8208940.1

Orthogroup ID

OG0005097

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 615

Gene Structure 614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8208940.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 331 bp

atgtctcctaatttcctgctgtggctagtcctcggggtttttttgatggctacaacgttaaggatgtatgcaacctgtcaacagctgcaagctcaagcacaggctcatgcagcagccgccagtggccttcttggtcatactgaattgcggttgcatatgccaccatccatagcactagcaacaagaggccgccttcaaggtctcaggcttcagcttgcacttcttgaccgtgaatttgatgacctagattatgaaactttgcgagctctggactccgacaatgttccatcagcatcttctatgagtgaggaagagataaatgctcttcctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010498 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0023056 GO:0030163 GO:0031984 GO:0032446 GO:0033993 GO:0036211 GO:0042175 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0098827 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

110

Amino Acids

12.09

Weight (kDa)

4.93

Isoelectric Point (pI)

71.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55530
fragaria_vesca	FvH4_7g22830 FvH4_7g22830
malus_domestica	MD01G1136500.v1.1 MD07G1201500.v1.1 MD11G1096300.v1.1
prunus_persica	Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.2G238100_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1 Prupe.6G071900_v2.0.a1
pyrus_communis	pycom01g15720 pycom07g18850 pycom11g08160
rosa_chinensis	RchiOBHm_Chr1g0367981
rosa_laevigata	RLG00000027249
rosa_multiflora	Rmu_co8208940.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288980
rosa_rugosa	Rorug01G0338200 Rorug01G0338200 Rorug01G0338200 Rorug01G0338300
rosa_samantha	Rh1AG345000 Rh1BG307200 Rh1CG322800 Rh1DG339300
rosa_wichuraiana	Rw1G030700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	117, 148, 190
AclI	AACGTT	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	197
AluBI	AGCT	4 cut(s)	85, 92, 214, 266
AluI	AGCT	4 cut(s)	85, 92, 214, 266
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	2 cut(s)	9, 206
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	2 cut(s)	124, 187
ApeKI	GCWGC	3 cut(s)	85, 110, 113
ApoI	RAATTY	1 cut(s)	233
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AvaI	CYCGRG	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	268
BbvI	GCAGC	3 cut(s)	72, 122, 125
BccI	CCATC	3 cut(s)	40, 172, 295
BcoDI	GTCTC	2 cut(s)	9, 206
BfaI	CTAG	3 cut(s)	26, 176, 245
BisI	GCNGC	5 cut(s)	86, 111, 114, 117, 190
BlsI	GCNGC	5 cut(s)	87, 112, 115, 118, 191
BmeT110I	CYCGRG	1 cut(s)	32
BmsI	GCATC	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	69, 164
BseMII	CTCAG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	120
BseXI	GCAGC	3 cut(s)	72, 122, 125
BshFI	GGCC	2 cut(s)	126, 189
BsiHKAI	GWGCWC	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	32
BsmAI	GTCTC	2 cut(s)	9, 206
BsnI	GGCC	2 cut(s)	126, 189
Bso31I	GGTCTC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	268
BspACI	CCGC	3 cut(s)	117, 148, 190
BspANI	GGCC	2 cut(s)	126, 189
BspCNI	CTCAG	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	306
BstC8I	GCNNGC	3 cut(s)	90, 216, 264
BstDEI	CTNAG	1 cut(s)	203
BstF5I	GGATG	2 cut(s)	69, 164
BstMAI	GTCTC	2 cut(s)	9, 206
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 116
BstV1I	GCAGC	3 cut(s)	72, 122, 125
BsuRI	GGCC	2 cut(s)	126, 189
BtsCI	GGATG	2 cut(s)	69, 164
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	3 cut(s)	90, 216, 264
CviAII	CATG	1 cut(s)	107
DdeI	CTNAG	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	268
Eco31I	GGTCTC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	194
Eco88I	CYCGRG	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	268
FaeI	CATG	1 cut(s)	110
FaiI	YATR	8 cut(s)	69, 108, 138, 156, 158, 170, 252, 302
FatI	CATG	1 cut(s)	106
FauNDI	CATATG	1 cut(s)	156
Fnu4HI	GCNGC	5 cut(s)	86, 111, 114, 117, 190
FokI	GGATG	2 cut(s)	76, 151
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	5 cut(s)	86, 111, 114, 117, 190
FspBI	CTAG	3 cut(s)	26, 176, 245
GluI	GCNGC	5 cut(s)	86, 111, 114, 117, 190
HaeIII	GGCC	2 cut(s)	126, 189
Hin1II	CATG	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	80
HindII	GTYRAC	1 cut(s)	80
HinfI	GANTC	1 cut(s)	272
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	2 cut(s)	224, 269
Hpy8I	GTNNAC	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	137, 203
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	5 cut(s)	71, 88, 110, 154, 218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 116
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	110
LpnPI	CCDG	6 cut(s)	29, 86, 88, 133, 190, 254
Lsp1109I	GCAGC	3 cut(s)	72, 122, 125
LweI	GCATC	1 cut(s)	302
MaeI	CTAG	3 cut(s)	26, 176, 245
MaeII	ACGT	1 cut(s)	56
MboII	GAAGA	3 cut(s)	288, 317, 323
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	3 cut(s)	10, 143, 233
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	3 cut(s)	41, 179, 301
MseI	TTAA	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	85
MwoI	GCNNNNNNNGC	2 cut(s)	110, 116
NdeI	CATATG	1 cut(s)	156
NlaIII	CATG	1 cut(s)	110
PkrI	GCNGC	5 cut(s)	87, 112, 115, 118, 191
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	268
Psp1406I	AACGTT	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	85
SacI	GAGCTC	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	59
SatI	GCNGC	5 cut(s)	86, 111, 114, 117, 190
SchI	GAGTC	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	8 cut(s)	59, 77, 87, 94, 202, 216, 246, 268
SfaNI	GCATC	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
Sse9I	AATT	3 cut(s)	10, 143, 233
SsiI	CCGC	3 cut(s)	117, 148, 190
SspMI	CTAG	3 cut(s)	26, 176, 245
SstI	GAGCTC	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	1 cut(s)	59
TasI	AATT	3 cut(s)	10, 143, 233
TauI	GCSGC	2 cut(s)	119, 192
Tru1I	TTAA	1 cut(s)	59
Tru9I	TTAA	1 cut(s)	59
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	3 cut(s)	85, 110, 113
TspDTI	ATGAA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	127
XapI	RAATTY	1 cut(s)	233
XspI	CTAG	3 cut(s)	26, 176, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.