Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008064

Physical Location & Seq

Genomic Coordinates Reverse (-)

20943928 .. 20946839

Gene Structure 2912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56510.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCAGAGTGAGGAATCTCACGAGCTTACGGATGGAATATCCGAGGAGAAGGAGTCCAAGGAAACGATGAAGAGTCAAAAGGCTGATAGAAAGAAAAAGAAGTTGAAAGAGAAATTGCTTAAGGAAGCTTCGAAAGCTGACAATAGAGGTGTTTGCTACTTAAGTCGTATCCCACCACACATGGATCACGTTAGACTTCGCCATATTCTCGCTCAATATGGAGAACTCGGAAGGATTTATCTTGCACCTGAAGATTCTGAAGCACAAGTGCACCGTAAGCGGGCTGGTGGATTTCGTGGCCAAAGGTTTTCTGAAGGGTGGGTGGAGTTTGCTAAGAAGAGCGTAGCTAAACGGGTTGCAGATATGCTAAATGGAGAACAAATCGGGGGGAAAAAGAAGTCATCAGTATACTATGATATTTGGAACATCAAATACTTGACCAAATTTAAATGGGATGATCTTACTGAAGAAATCGCATACAAAAGTGCAATACGGGAACAGAAATTAAATATGGTTCTTTCTGCTGCAAAGAGGGAGAAAGACTTTTATCTATCTAAAATAGAGAAGTCTCGTGCCATGACCGAGATAGATGCACGAATGGAAAAGAAACGAAAGATTCAAGAAGAATCGGGTAGCAATGCTGAAGCAGCACCAGTCTTTCCACCTAGGGCGATTTTCCAGTTTAGACAGAAGAAATCAATTGAAAATGAGACATCTCAAAGCAAGCCTGGGCTCTCCACTGATTTCCTAGCATCGGTATTTGGCGGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

257

Amino Acids

29.52

Weight (kDa)

9.56

Isoelectric Point (pI)

48.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56510 AT3G56510 AT3G56510 AT3G56510 AT3G56510
fragaria_vesca	FvH4_6g52000
malus_domestica	MD09G1021000.v1.1 MD09G1021200.v1.1 MD17G1021200.v1.1
prunus_persica	Prupe.3G295300_v2.0.a1 Prupe.3G295300_v2.0.a1
pyrus_communis	pycom111g01760
rosa_chinensis	RchiOBHm_Chr2g0173471
rosa_laevigata	RLG00000022193
rosa_multiflora	Rmu_co8499485.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078820
rosa_rugosa	Rorug02G0570800 Rorug02G0570900 Rorug02G0571000
rosa_samantha	Rh2AG649200 Rh2BG659800 Rh2CG625000 Rh2DG674900
rosa_wichuraiana	Rw2G053300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	408
AciI	CCGC	2 cut(s)	280, 765
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	443
AcuI	CTGAAG	5 cut(s)	270, 279, 333, 486, 663
AfiI	CCNNNNNNNGG	2 cut(s)	280, 754
AflII	CTTAAG	2 cut(s)	119, 160
AgsI	TTSAA	3 cut(s)	106, 620, 704
AjnI	CCWGG	1 cut(s)	727
AluBI	AGCT	4 cut(s)	25, 128, 137, 347
AluI	AGCT	4 cut(s)	25, 128, 137, 347
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	573, 704
Alw44I	GTGCAC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	1 cut(s)	298
ApaLI	GTGCAC	1 cut(s)	269
ApeKI	GCWGC	2 cut(s)	524, 647
ApoI	RAATTY	1 cut(s)	443
AspA2I	CCTAGG	1 cut(s)	665
AsuII	TTCGAA	1 cut(s)	131
AvrII	CCTAGG	1 cut(s)	665
BaeGI	GKGCMC	1 cut(s)	273
BalI	TGGCCA	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	735
BauI	CACGAG	2 cut(s)	20, 570
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	511, 659
BccI	CCATC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	572, 606
BciT130I	CCWGG	1 cut(s)	729
BciVI	GTATCC	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	573, 704
BfaI	CTAG	2 cut(s)	666, 749
BfrI	CTTAAG	2 cut(s)	119, 160
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	2 cut(s)	525, 648
BlnI	CCTAGG	1 cut(s)	665
BlsI	GCNGC	2 cut(s)	526, 649
Bme1390I	CCNGG	1 cut(s)	729
BmrFI	CCNGG	1 cut(s)	729
BmsI	GCATC	2 cut(s)	580, 761
Bpu14I	TTCGAA	1 cut(s)	131
BsaJI	CCNNGG	4 cut(s)	42, 57, 665, 728
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 754
Bse1I	ACTGG	2 cut(s)	653, 679
Bse3DI	GCAATG	1 cut(s)	643
BseBI	CCWGG	1 cut(s)	729
BseDI	CCNNGG	4 cut(s)	42, 57, 665, 728
BseGI	GGATG	2 cut(s)	37, 460
BseLI	CCNNNNNNNGG	2 cut(s)	280, 754
BseMI	GCAATG	1 cut(s)	643
BseNI	ACTGG	2 cut(s)	653, 679
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	273
BseXI	GCAGC	2 cut(s)	511, 659
BshFI	GGCC	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	273
BslI	CCNNNNNNNGG	2 cut(s)	280, 754
BsmAI	GTCTC	2 cut(s)	573, 704
BsnI	GGCC	1 cut(s)	300
Bsp119I	TTCGAA	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	273, 735
Bsp143I	GATC	2 cut(s)	184, 457
BspACI	CCGC	2 cut(s)	280, 765
BspANI	GGCC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	192
BspQI	GCTCTTC	1 cut(s)	332
BspT104I	TTCGAA	1 cut(s)	131
BspTI	CTTAAG	2 cut(s)	119, 160
BsrDI	GCAATG	1 cut(s)	643
BsrI	ACTGG	2 cut(s)	653, 679
BssECI	CCNNGG	4 cut(s)	42, 57, 665, 728
BssMI	GATC	2 cut(s)	184, 457
BssNAI	GTATAC	1 cut(s)	409
BssSI	CACGAG	2 cut(s)	20, 570
BssT1I	CCWWGG	2 cut(s)	57, 665
Bst1107I	GTATAC	1 cut(s)	409
Bst2BI	CACGAG	2 cut(s)	20, 570
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	2 cut(s)	65, 332
BstAFI	CTTAAG	2 cut(s)	119, 160
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	282, 725
BstDEI	CTNAG	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	37, 460
BstKTI	GATC	2 cut(s)	187, 460
BstMAI	GTCTC	2 cut(s)	573, 704
BstMBI	GATC	2 cut(s)	184, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 277, 647
BstNI	CCWGG	1 cut(s)	729
BstSCI	CCNGG	1 cut(s)	727
BstSLI	GKGCMC	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	511, 659
BstZ17I	GTATAC	1 cut(s)	409
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	37, 460
BtsIMutI	CAGTG	1 cut(s)	738
Cac8I	GCNNGC	2 cut(s)	282, 725
CviAII	CATG	2 cut(s)	181, 577
CviJI	RGCY	9 cut(s)	25, 83, 128, 137, 284, 300, 347, 727, 733
CviKI_1	RGCY	9 cut(s)	25, 83, 128, 137, 284, 300, 347, 727, 733
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	2 cut(s)	186, 459
DpnII	GATC	2 cut(s)	184, 457
DraI	TTTAAA	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	298
Eam1104I	CTCTTC	2 cut(s)	65, 332
EarI	CTCTTC	2 cut(s)	65, 332
Eco130I	CCWWGG	2 cut(s)	57, 665
Eco24I	GRGCYC	1 cut(s)	735
Eco57I	CTGAAG	5 cut(s)	270, 279, 333, 486, 663
EcoRII	CCWGG	1 cut(s)	727
EcoT14I	CCWWGG	2 cut(s)	57, 665
EcoT38I	GRGCYC	1 cut(s)	735
ErhI	CCWWGG	2 cut(s)	57, 665
FaeI	CATG	2 cut(s)	184, 580
FaiI	YATR	9 cut(s)	182, 204, 219, 365, 409, 414, 478, 512, 578
FatI	CATG	2 cut(s)	180, 576
FauI	CCCGC	1 cut(s)	273
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	2 cut(s)	525, 648
FokI	GGATG	2 cut(s)	44, 467
FriOI	GRGCYC	1 cut(s)	735
Fsp4HI	GCNGC	2 cut(s)	525, 648
FspBI	CTAG	2 cut(s)	666, 749
GluI	GCNGC	2 cut(s)	525, 648
HaeIII	GGCC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	184, 580
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	6 cut(s)	14, 53, 73, 254, 616, 626
Hpy166II	GTNNAC	2 cut(s)	271, 409
Hpy188I	TCNGA	4 cut(s)	43, 230, 259, 313
Hpy188III	TCNNGA	2 cut(s)	20, 620
Hpy8I	GTNNAC	2 cut(s)	271, 409
HpyAV	CCTTC	3 cut(s)	43, 225, 308
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	7 cut(s)	4, 245, 271, 359, 488, 527, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 277, 647
HpyF3I	CTNAG	1 cut(s)	333
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	184, 580
Kzo9I	GATC	2 cut(s)	184, 457
LguI	GCTCTTC	1 cut(s)	332
LpnPI	CCDG	6 cut(s)	261, 270, 666, 692, 714, 741
Lsp1109I	GCAGC	2 cut(s)	511, 659
LweI	GCATC	2 cut(s)	580, 761
MaeI	CTAG	2 cut(s)	666, 749
MaeII	ACGT	1 cut(s)	189
MalI	GATC	2 cut(s)	186, 459
MboI	GATC	2 cut(s)	184, 457
MboII	GAAGA	6 cut(s)	82, 263, 349, 479, 635, 703
MfeI	CAATTG	1 cut(s)	699
MhlI	GDGCHC	2 cut(s)	273, 735
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	4 cut(s)	113, 443, 503, 699
MluNI	TGGCCA	1 cut(s)	300
MlyI	GAGTC	2 cut(s)	62, 82
MnlI	CCTC	4 cut(s)	4, 37, 140, 525
Mox20I	TGGCCA	1 cut(s)	300
MscI	TGGCCA	1 cut(s)	300
MseI	TTAA	5 cut(s)	120, 161, 447, 506, 772
Msp20I	TGGCCA	1 cut(s)	300
MspCI	CTTAAG	2 cut(s)	119, 160
MspR9I	CCNGG	1 cut(s)	729
MunI	CAATTG	1 cut(s)	699
MvaI	CCWGG	1 cut(s)	729
MwoI	GCNNNNNNNGC	3 cut(s)	134, 277, 647
NdeII	GATC	2 cut(s)	184, 457
NlaIII	CATG	2 cut(s)	184, 580
NspV	TTCGAA	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	332
PfeI	GAWTC	4 cut(s)	14, 254, 616, 626
PkrI	GCNGC	2 cut(s)	526, 649
PleI	GAGTC	2 cut(s)	61, 81
PpsI	GAGTC	2 cut(s)	61, 81
Psp6I	CCWGG	1 cut(s)	727
PspGI	CCWGG	1 cut(s)	727
PsrI	GAACNNNNNNTAC	2 cut(s)	416, 448
SapI	GCTCTTC	1 cut(s)	332
SaqAI	TTAA	5 cut(s)	120, 161, 447, 506, 772
SatI	GCNGC	2 cut(s)	525, 648
Sau3AI	GATC	2 cut(s)	184, 457
SchI	GAGTC	2 cut(s)	62, 82
ScrFI	CCNGG	1 cut(s)	729
SduI	GDGCHC	2 cut(s)	273, 735
SetI	ASST	9 cut(s)	27, 130, 139, 151, 192, 250, 308, 349, 667
SfaNI	GCATC	2 cut(s)	580, 761
SfuI	TTCGAA	1 cut(s)	131
SmiI	ATTTAAAT	1 cut(s)	448
SmlI	CTYRAG	2 cut(s)	119, 160
SmoI	CTYRAG	2 cut(s)	119, 160
Sse9I	AATT	4 cut(s)	113, 443, 503, 699
SsiI	CCGC	2 cut(s)	280, 765
SspMI	CTAG	2 cut(s)	666, 749
StyD4I	CCNGG	1 cut(s)	727
StyI	CCWWGG	2 cut(s)	57, 665
SwaI	ATTTAAAT	1 cut(s)	448
TaaI	ACNGT	1 cut(s)	275
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	131
TaqII	GACCGA	1 cut(s)	596
TasI	AATT	4 cut(s)	113, 443, 503, 699
TfiI	GAWTC	4 cut(s)	14, 254, 616, 626
Tru1I	TTAA	5 cut(s)	120, 161, 447, 506, 772
Tru9I	TTAA	5 cut(s)	120, 161, 447, 506, 772
TscAI	CASTG	1 cut(s)	745
TseI	GCWGC	2 cut(s)	524, 647
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	745
Vha464I	CTTAAG	2 cut(s)	119, 160
VneI	GTGCAC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	443
XmaJI	CCTAGG	1 cut(s)	665
XmiI	GTMKAC	1 cut(s)	408
XspI	CTAG	2 cut(s)	666, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.