Rorug02G0571000

Pre-rRNA-processing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
69731226 .. 69732764
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0571000.1

Sequence Viewer

Length: 1344 bp
ATGGCAAACTTATCAGTGAAGAAAGTTGAGGTCTGCAGGGTGGCACCAAAACCAGGTTCATCAGAGAACCAGTCACTTCCTCTAACATTCTTCGACTTATTCTGGCTCCGTTTTCAGCCCGTAGAACGCCTCTACTTTTACCAAACCTCTTCCACCGATTCCGTACTTTCCAAACTCAAAACCTCCCTATCTCTCACTCTCCAACACTTCCTACCTCTCGCCGGAAACCTCACCTGGCCCCAAGACTCCCTCAAACCCGTTCTAAGCTACGTTCAAGGCGACGCCGTTTCACTCACCGTAGCTGAGTCCGATGCAGATTTCGACCACCTCATAAACAGTATCTCTCTTGCAGCCCAAGATTTCAGACCTCTTGTTCCTCAGTTGGACGTGACTGACGAGCGAGCCGCCGCCATGGCGTTGCAAATCACTGTCTATCCCAACCGCGGTTTCTCCATCGGAACGGCCATGCACCACGCAATCCTTGACGGCAGAACTTCGACCTCGTTTGTCAAAGCATGGGCTCATATATGCAAACATGAAGAAGCACAAGCACAAGCTCTGCCTTCGTCTTTGGTACCCTTTTACGACAGAACGGTCGTCAAGGACCCGGCCGGGCTCGATGAACTCTACTCTGTCCATCACCAAAACAAGGACGGCCGGACCGACAACAGAAGCTTAAGCATTGTCTCCTACCGTAAAGCTTCAGATCAAGAAGACTTGATTCGGGGCACATTCGAGTTCACTCGCGCATTTATCCAAACACTTAGAGGGCATGTCATATCTAAAATGGCTTCTGATTCATCGCTCCACTTGTCAACTTTTTCTCTGGTCTATGCCTACACATGGGTTTGTATGGTGAAGGCCGAAGAAATCAAAGGGGAGAAGACGGTAGTCGTCTTCGGGGTGGACTCCAGGTCCCGGTTGGAACCTCCAATACCTGCAACGTATTTTGGTAACTGCGTAGTGGGTCGTGTAGCAGTTGCGGAAACAAAAGGGCTATTGGGTCAAGATGGACTGGTTGTAGCTGTGAAAGCAATCACAGAAGCTTTAAGAAGCTTGGAGAAAGGGGTTTTGGATGGGGCAGAGAATTGGGTTTCGAAATTTCTCGATTTTTCGCTGTATGATAGGATATATTCGATTGCAGGGTCACATAGGTTTGAGGTTTATGATACCGATTTTGGATGGGGAAGGCCGAAAAGGGTTGAGGTAATCTCCATTGATAAGACGGGAGCCATTTCTCTTTCGGATAGTAAGAATGGTGGTGGAGGTGTTGAGGTTGGCGTGGTTTTGAAGAAACAGTATATGGAGGCTTTCGATGCTCTGTTTGCTAGCCCAGTGCATTAG

Protein Analysis

447

Amino Acids

49.36

Weight (kDa)

6.19

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 7 - 439 4.8e-52 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 593
Acc36I ACCTGC 1 cut(s) 946
Acc65I GGTACC 1 cut(s) 574
AccB1I GGYRCC 2 cut(s) 43, 574
AccII CGCG 2 cut(s) 444, 747
AciI CCGC 5 cut(s) 405, 408, 442, 444, 983
AcoI YGGCCR 3 cut(s) 462, 609, 655
AcsI RAATTY 1 cut(s) 1100
AcuI CTGAAG 1 cut(s) 687
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 2 cut(s) 165, 576
AfiI CCNNNNNNNGG 6 cut(s) 53, 221, 443, 649, 843, 918
AflII CTTAAG 1 cut(s) 676
AgsI TTSAA 2 cut(s) 275, 1291
AhdI GACNNNNNGTC 1 cut(s) 913
AjiI CACGTC 1 cut(s) 388
AjnI CCWGG 3 cut(s) 52, 233, 911
AjuI GAANNNNNNNTTGG 6 cut(s) 40, 72, 431, 463, 1055, 1087
AluBI AGCT 8 cut(s) 267, 302, 557, 675, 701, 1025, 1046, 1056
AluI AGCT 8 cut(s) 267, 302, 557, 675, 701, 1025, 1046, 1056
Alw26I GTCTC 1 cut(s) 691
AoxI GGCC 6 cut(s) 236, 462, 609, 655, 861, 1190
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 1 cut(s) 1100
Asp718I GGTACC 1 cut(s) 574
AspLEI GCGC 1 cut(s) 749
AspS9I GGNCC 4 cut(s) 237, 604, 660, 915
AsuC2I CCSGG 3 cut(s) 608, 613, 919
AsuHPI GGTGA 4 cut(s) 223, 286, 632, 868
AsuII TTCGAA 1 cut(s) 1097
AsuNHI GCTAGC 1 cut(s) 1328
AvaII GGWCC 3 cut(s) 604, 660, 915
BaeGI GKGCMC 1 cut(s) 731
BanI GGYRCC 2 cut(s) 43, 574
BanII GRGCYC 2 cut(s) 523, 618
BbsI GAAGAC 3 cut(s) 720, 889, 890
BbvI GCAGC 1 cut(s) 362
BccI CCATC 5 cut(s) 461, 645, 1004, 1070, 1176
BceAI ACGGC 4 cut(s) 269, 477, 502, 670
BciT130I CCWGG 3 cut(s) 54, 235, 913
BcnI CCSGG 3 cut(s) 608, 613, 919
BcoDI GTCTC 1 cut(s) 691
BfaI CTAG 1 cut(s) 1329
BfmI CTRYAG 1 cut(s) 34
BfrI CTTAAG 1 cut(s) 676
BfuAI ACCTGC 1 cut(s) 946
BglI GCCNNNNNGGC 1 cut(s) 413
BisI GCNGC 3 cut(s) 351, 405, 408
BlsI GCNGC 3 cut(s) 352, 406, 409
Bme1390I CCNGG 6 cut(s) 54, 235, 608, 613, 913, 919
Bme18I GGWCC 3 cut(s) 604, 660, 915
BmeRI GACNNNNNGTC 1 cut(s) 913
BmgBI CACGTC 1 cut(s) 388
BmgT120I GGNCC 4 cut(s) 237, 604, 660, 915
BmiI GGNNCC 8 cut(s) 45, 107, 239, 576, 606, 917, 927, 1231
BmrFI CCNGG 6 cut(s) 54, 235, 608, 613, 913, 919
BmrI ACTGGG 1 cut(s) 1328
BmsI GCATC 2 cut(s) 301, 1306
BmtI GCTAGC 1 cut(s) 1332
BmuI ACTGGG 1 cut(s) 1328
BoxI GACNNNNGTC 1 cut(s) 890
BpiI GAAGAC 3 cut(s) 720, 889, 890
BplI GAGNNNNNCTC 2 cut(s) 1196, 1228
BpmI CTGGAG 1 cut(s) 895
Bpu14I TTCGAA 1 cut(s) 1097
BpuMI CCSGG 3 cut(s) 608, 613, 919
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 411, 442
Bsc4I CCNNNNNNNGG 6 cut(s) 53, 221, 443, 649, 843, 918
Bse1I ACTGG 3 cut(s) 70, 1020, 1334
BseBI CCWGG 3 cut(s) 54, 235, 913
BseDI CCNNGG 2 cut(s) 411, 442
BseGI GGATG 2 cut(s) 1081, 1187
BseLI CCNNNNNNNGG 6 cut(s) 53, 221, 443, 649, 843, 918
BseMII CTCAG 2 cut(s) 294, 392
BseNI ACTGG 3 cut(s) 70, 1020, 1334
BseSI GKGCMC 1 cut(s) 731
BseX3I CGGCCG 2 cut(s) 609, 655
BseXI GCAGC 1 cut(s) 362
Bsh1236I CGCG 2 cut(s) 444, 747
Bsh1285I CGRYCG 3 cut(s) 597, 612, 658
BshFI GGCC 6 cut(s) 238, 464, 611, 657, 863, 1192
BshNI GGYRCC 2 cut(s) 43, 574
BsiEI CGRYCG 3 cut(s) 597, 612, 658
BsiSI CCGG 5 cut(s) 222, 608, 612, 658, 919
BslFI GGGAC 1 cut(s) 901
BslI CCNNNNNNNGG 6 cut(s) 53, 221, 443, 649, 843, 918
BsmAI GTCTC 1 cut(s) 691
BsmFI GGGAC 1 cut(s) 901
BsnI GGCC 6 cut(s) 238, 464, 611, 657, 863, 1192
Bsp119I TTCGAA 1 cut(s) 1097
Bsp1286I GDGCHC 3 cut(s) 523, 618, 731
Bsp143I GATC 1 cut(s) 706
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 5 cut(s) 405, 408, 442, 444, 983
BspANI GGCC 6 cut(s) 238, 464, 611, 657, 863, 1192
BspCNI CTCAG 2 cut(s) 295, 391
BspFNI CGCG 2 cut(s) 444, 747
BspLI GGNNCC 8 cut(s) 45, 107, 239, 576, 606, 917, 927, 1231
BspMAI CTGCAG 1 cut(s) 38
BspMI ACCTGC 1 cut(s) 946
BspOI GCTAGC 1 cut(s) 1332
BspT104I TTCGAA 1 cut(s) 1097
BspT107I GGYRCC 2 cut(s) 43, 574
BspTI CTTAAG 1 cut(s) 676
BsrI ACTGG 3 cut(s) 70, 1020, 1334
BssECI CCNNGG 2 cut(s) 411, 442
BssMI GATC 1 cut(s) 706
BssNI GRCGYC 1 cut(s) 282
BssT1I CCWWGG 1 cut(s) 411
Bst2UI CCWGG 3 cut(s) 54, 235, 913
Bst4CI ACNGT 7 cut(s) 298, 338, 430, 595, 695, 889, 1299
Bst6I CTCTTC 1 cut(s) 154
BstACI GRCGYC 1 cut(s) 282
BstAFI CTTAAG 1 cut(s) 676
BstBI TTCGAA 1 cut(s) 1097
BstC8I GCNNGC 2 cut(s) 402, 1330
BstDEI CTNAG 4 cut(s) 263, 303, 378, 764
BstDSI CCRYGG 2 cut(s) 411, 442
BstF5I GGATG 2 cut(s) 1081, 1187
BstFNI CGCG 2 cut(s) 444, 747
BstHHI GCGC 1 cut(s) 749
BstKTI GATC 1 cut(s) 709
BstMAI GTCTC 1 cut(s) 691
BstMBI GATC 1 cut(s) 706
BstMCI CGRYCG 3 cut(s) 597, 612, 658
BstMWI GCNNNNNNNGC 4 cut(s) 413, 1031, 1316, 1325
BstNI CCWGG 3 cut(s) 54, 235, 913
BstNSI RCATGY 1 cut(s) 776
BstPAI GACNNNNGTC 1 cut(s) 890
BstSCI CCNGG 6 cut(s) 52, 233, 606, 611, 911, 917
BstSFI CTRYAG 1 cut(s) 34
BstSLI GKGCMC 1 cut(s) 731
BstUI CGCG 2 cut(s) 444, 747
BstV1I GCAGC 1 cut(s) 362
BstV2I GAAGAC 3 cut(s) 720, 889, 890
BstZI CGGCCG 2 cut(s) 609, 655
BsuRI GGCC 6 cut(s) 238, 464, 611, 657, 863, 1192
BtgI CCRYGG 2 cut(s) 411, 442
BtgZI GCGATG 1 cut(s) 786
BtrI CACGTC 1 cut(s) 388
BtsCI GGATG 2 cut(s) 1081, 1187
BtsIMutI CAGTG 3 cut(s) 21, 426, 1341
BveI ACCTGC 1 cut(s) 946
Cac8I GCNNGC 2 cut(s) 402, 1330
CfoI GCGC 1 cut(s) 749
Cfr13I GGNCC 4 cut(s) 237, 604, 660, 915
Cfr42I CCGCGG 1 cut(s) 445
CpoI CGGWCCG 1 cut(s) 660
CseI GACGC 1 cut(s) 290
CsiI ACCWGGT 1 cut(s) 52
Csp6I GTAC 2 cut(s) 164, 575
CspI CGGWCCG 1 cut(s) 660
CviAII CATG 6 cut(s) 412, 466, 516, 536, 773, 843
CviQI GTAC 2 cut(s) 164, 575
DdeI CTNAG 4 cut(s) 263, 303, 378, 764
DpnI GATC 1 cut(s) 708
DpnII GATC 1 cut(s) 706
DrdI GACNNNNNNGTC 1 cut(s) 593
DriI GACNNNNNGTC 1 cut(s) 913
DseDI GACNNNNNNGTC 1 cut(s) 593
EaeI YGGCCR 3 cut(s) 462, 609, 655
EagI CGGCCG 2 cut(s) 609, 655
Eam1104I CTCTTC 1 cut(s) 154
Eam1105I GACNNNNNGTC 1 cut(s) 913
EarI CTCTTC 1 cut(s) 154
EclXI CGGCCG 2 cut(s) 609, 655
Eco130I CCWWGG 1 cut(s) 411
Eco24I GRGCYC 2 cut(s) 523, 618
Eco47I GGWCC 3 cut(s) 604, 660, 915
Eco52I CGGCCG 2 cut(s) 609, 655
Eco57I CTGAAG 1 cut(s) 687
EcoO109I RGGNCCY 2 cut(s) 604, 915
EcoRII CCWGG 3 cut(s) 52, 233, 911
EcoT14I CCWWGG 1 cut(s) 411
EcoT38I GRGCYC 2 cut(s) 523, 618
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 6 cut(s) 415, 469, 519, 539, 776, 846
FaqI GGGAC 1 cut(s) 901
FatI CATG 6 cut(s) 411, 465, 515, 535, 772, 842
Fnu4HI GCNGC 3 cut(s) 351, 405, 408
FokI GGATG 2 cut(s) 1088, 1194
FriOI GRGCYC 2 cut(s) 523, 618
Fsp4HI GCNGC 3 cut(s) 351, 405, 408
FspBI CTAG 1 cut(s) 1329
GlaI GCGC 1 cut(s) 748
GluI GCNGC 3 cut(s) 351, 405, 408
GsuI CTGGAG 1 cut(s) 895
HaeIII GGCC 6 cut(s) 238, 464, 611, 657, 863, 1192
HapII CCGG 5 cut(s) 222, 608, 612, 658, 919
HgaI GACGC 1 cut(s) 290
HhaI GCGC 1 cut(s) 749
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 6 cut(s) 415, 469, 519, 539, 776, 846
Hin6I GCGC 1 cut(s) 747
HinP1I GCGC 1 cut(s) 747
HincII GTYRAC 1 cut(s) 816
HindII GTYRAC 1 cut(s) 816
HindIII AAGCTT 4 cut(s) 673, 699, 1044, 1054
HinfI GANTC 6 cut(s) 158, 245, 305, 721, 797, 908
HpaII CCGG 5 cut(s) 222, 608, 612, 658, 919
HphI GGTGA 4 cut(s) 223, 286, 632, 868
Hpy166II GTNNAC 3 cut(s) 741, 816, 907
Hpy188I TCNGA 7 cut(s) 64, 310, 365, 458, 706, 796, 1246
Hpy188III TCNNGA 3 cut(s) 710, 1007, 1106
Hpy8I GTNNAC 3 cut(s) 741, 816, 907
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 3 cut(s) 573, 853, 1182
HpyCH4III ACNGT 7 cut(s) 298, 338, 430, 595, 695, 889, 1299
HpyCH4IV ACGT 3 cut(s) 270, 387, 944
HpyCH4V TGCA 9 cut(s) 36, 314, 350, 421, 469, 531, 941, 1142, 1339
HpyF10VI GCNNNNNNNGC 4 cut(s) 413, 1031, 1316, 1325
HpyF3I CTNAG 4 cut(s) 263, 303, 378, 764
HpySE526I ACGT 3 cut(s) 270, 387, 944
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 6 cut(s) 415, 469, 519, 539, 776, 846
HspAI GCGC 1 cut(s) 747
KpnI GGTACC 1 cut(s) 578
KspI CCGCGG 1 cut(s) 445
Kzo9I GATC 1 cut(s) 706
LmnI GCTCC 3 cut(s) 111, 810, 1229
Lsp1109I GCAGC 1 cut(s) 362
LweI GCATC 2 cut(s) 301, 1306
MabI ACCWGGT 1 cut(s) 52
MaeI CTAG 1 cut(s) 1329
MaeII ACGT 3 cut(s) 270, 387, 944
MaeIII GTNAC 4 cut(s) 72, 388, 953, 1146
MalI GATC 1 cut(s) 708
MboI GATC 1 cut(s) 706
MboII GAAGA 9 cut(s) 31, 82, 141, 551, 725, 878, 889, 895, 1303
MhlI GDGCHC 3 cut(s) 523, 618, 731
MluCI AATT 2 cut(s) 1087, 1100
MlyI GAGTC 3 cut(s) 239, 314, 902
MmeI TCCRAC 3 cut(s) 226, 363, 903
MseI TTAA 2 cut(s) 677, 1049
MspA1I CMGCKG 1 cut(s) 444
MspCI CTTAAG 1 cut(s) 676
MspI CCGG 5 cut(s) 222, 608, 612, 658, 919
MspR9I CCNGG 6 cut(s) 54, 235, 608, 613, 913, 919
MvaI CCWGG 3 cut(s) 54, 235, 913
MvnI CGCG 2 cut(s) 444, 747
MwoI GCNNNNNNNGC 4 cut(s) 413, 1031, 1316, 1325
NciI CCSGG 3 cut(s) 608, 613, 919
NcoI CCATGG 1 cut(s) 411
NdeII GATC 1 cut(s) 706
NheI GCTAGC 1 cut(s) 1328
NlaIII CATG 6 cut(s) 415, 469, 519, 539, 776, 846
NlaIV GGNNCC 8 cut(s) 45, 107, 239, 576, 606, 917, 927, 1231
NmuCI GTSAC 3 cut(s) 72, 388, 1146
NspI RCATGY 1 cut(s) 776
NspV TTCGAA 1 cut(s) 1097
PcsI WCGNNNNNNNCGW 3 cut(s) 276, 393, 660
PfeI GAWTC 3 cut(s) 158, 721, 797
PkrI GCNGC 3 cut(s) 352, 406, 409
PleI GAGTC 3 cut(s) 239, 313, 902
PpsI GAGTC 3 cut(s) 239, 313, 902
PpuMI RGGWCCY 2 cut(s) 604, 915
PshAI GACNNNNGTC 1 cut(s) 890
Psp5II RGGWCCY 2 cut(s) 604, 915
Psp6I CCWGG 3 cut(s) 52, 233, 911
PspGI CCWGG 3 cut(s) 52, 233, 911
PspN4I GGNNCC 8 cut(s) 45, 107, 239, 576, 606, 917, 927, 1231
PspPI GGNCC 4 cut(s) 237, 604, 660, 915
PspPPI RGGWCCY 2 cut(s) 604, 915
PsrI GAACNNNNNNTAC 2 cut(s) 918, 950
PstI CTGCAG 1 cut(s) 38
RsaI GTAC 2 cut(s) 165, 576
RsaNI GTAC 2 cut(s) 164, 575
Rsr2I CGGWCCG 1 cut(s) 660
RsrII CGGWCCG 1 cut(s) 660
SacII CCGCGG 1 cut(s) 445
SaqAI TTAA 2 cut(s) 677, 1049
SatI GCNGC 3 cut(s) 351, 405, 408
Sau3AI GATC 1 cut(s) 706
Sau96I GGNCC 4 cut(s) 237, 604, 660, 915
SchI GAGTC 3 cut(s) 239, 314, 902
ScrFI CCNGG 6 cut(s) 54, 235, 608, 613, 913, 919
SduI GDGCHC 3 cut(s) 523, 618, 731
SexAI ACCWGGT 1 cut(s) 52
SfaNI GCATC 2 cut(s) 301, 1306
SfcI CTRYAG 1 cut(s) 34
Sfr303I CCGCGG 1 cut(s) 445
SfuI TTCGAA 1 cut(s) 1097
SgrBI CCGCGG 1 cut(s) 445
SinI GGWCC 3 cut(s) 604, 660, 915
SmlI CTYRAG 1 cut(s) 676
SmoI CTYRAG 1 cut(s) 676
Sse9I AATT 2 cut(s) 1087, 1100
SsiI CCGC 5 cut(s) 405, 408, 442, 444, 983
SspMI CTAG 1 cut(s) 1329
StyD4I CCNGG 6 cut(s) 52, 233, 606, 611, 911, 917
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 7 cut(s) 298, 338, 430, 595, 695, 889, 1299
TaiI ACGT 3 cut(s) 273, 390, 947
TaqI TCGA 9 cut(s) 93, 321, 497, 618, 735, 1097, 1107, 1136, 1314
TaqII GACCGA 1 cut(s) 677
TasI AATT 2 cut(s) 1087, 1100
TauI GCSGC 2 cut(s) 407, 410
TfiI GAWTC 3 cut(s) 158, 721, 797
Tru1I TTAA 2 cut(s) 677, 1049
Tru9I TTAA 2 cut(s) 677, 1049
TscAI CASTG 3 cut(s) 21, 433, 1341
TseFI GTSAC 3 cut(s) 72, 388, 1146
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 3 cut(s) 72, 388, 1146
TspDTI ATGAA 4 cut(s) 48, 552, 636, 789
TspGWI ACGGA 2 cut(s) 98, 151
TspRI CASTG 3 cut(s) 21, 433, 1341
Vha464I CTTAAG 1 cut(s) 676
VpaK11BI GGWCC 3 cut(s) 604, 660, 915
XapI RAATTY 1 cut(s) 1100
XceI RCATGY 1 cut(s) 776
XcmI CCANNNNNNNNNTGG 1 cut(s) 919
XspI CTAG 1 cut(s) 1329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.