Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008064

Physical Location & Seq

Genomic Coordinates Forward (+)

26298170 .. 26300608

Gene Structure 2439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G295300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGATATCACGAGAAAGAGTAAAAAGAAGAAATTGGTGAAGGAAGGCGGGAAGGATGAGAAGCGTGGGGTTTGCTACTTGGGTCGGATTCCTCCTCGCATGGATCCTTCAACACTTCGTCAGATGCTCTCTCAGTTTGGAGAGATACAAAGGGTTTATCTTACACCTCAAGACCCTTCTGCTCAAGTACATAACATCCGAGCTGGTAAATTTCAAAGGCAAAACTTTTCAGAAGGGTGGGTTGAATTTTCTGACAAAAGGGTTGCTAAGAGAGTTGCTAATATGTTAAATGGTGAACAAATAGGTGGGAGGAAGAGGTCATCTTTCTACTATGATCTTTGGAATATCAAGTATTTAAGTAAATTCAAGTGGGATGATCTTACTGAAGAGATTGCTTACAAGAAAGCCACTCGGGAGCAAAAACTAGCTTTAGAAATATCTGCTGCTAAGAGGGAGCGGGATTTCTATCTCTCTAAAGTTGATAAGTCCCGTGCCTTGAGTTGCATAGAAGAAAGATTGAAAAAGAAGCAAAAGGTCGAAGAAGATCCAGGACTAAAGCAAAAGGCCGAAGAAGATCTAGGACTAAAGCAAAAGGCTGAAGAAGATCCAGGACTAAAGCCAAAGGCCGAAGAAGATCCAGAAAACAAGCCTGATCTCCCTGTTAGCCAGCCAAAACGGGAGGTAATTCGCCGGTTCCGACAGAAGACACCTGTTGCAGATAATGCTGCTGAAATCAGACCTCGGCTCTCGAAAGATATACTTGCAGGGGTATTTGGTGGTTCTTATTGCCCAACTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

267

Amino Acids

30.75

Weight (kDa)

9.66

Isoelectric Point (pI)

59.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56510 AT3G56510 AT3G56510 AT3G56510 AT3G56510
fragaria_vesca	FvH4_6g52000
malus_domestica	MD09G1021000.v1.1 MD09G1021200.v1.1 MD17G1021200.v1.1
prunus_persica	Prupe.3G295300_v2.0.a1 Prupe.3G295300_v2.0.a1
pyrus_communis	pycom111g01760
rosa_chinensis	RchiOBHm_Chr2g0173471
rosa_laevigata	RLG00000022193
rosa_multiflora	Rmu_co8499485.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078820
rosa_rugosa	Rorug02G0570800 Rorug02G0570900 Rorug02G0571000
rosa_samantha	Rh2AG649200 Rh2BG659800 Rh2CG625000 Rh2DG674900
rosa_wichuraiana	Rw2G053300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	457
AciI	CCGC	2 cut(s)	48, 457
AclWI	GGATC	5 cut(s)	98, 111, 539, 599, 629
AcsI	RAATTY	3 cut(s)	209, 245, 362
AcuI	CTGAAG	2 cut(s)	405, 618
AfaI	GTAC	1 cut(s)	189
AgsI	TTSAA	5 cut(s)	111, 215, 245, 367, 520
AjnI	CCWGG	2 cut(s)	547, 607
AluBI	AGCT	2 cut(s)	203, 428
AluI	AGCT	2 cut(s)	203, 428
AlwI	GGATC	5 cut(s)	98, 111, 539, 599, 629
Ama87I	CYCGRG	1 cut(s)	411
AoxI	GGCC	2 cut(s)	564, 624
ApeKI	GCWGC	2 cut(s)	443, 725
ApoI	RAATTY	3 cut(s)	209, 245, 362
AsuHPI	GGTGA	2 cut(s)	49, 305
AvaI	CYCGRG	1 cut(s)	411
BamHI	GGATCC	1 cut(s)	103
BauI	CACGAG	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	710
BbvI	GCAGC	2 cut(s)	430, 712
BciT130I	CCWGG	2 cut(s)	549, 609
BfaI	CTAG	2 cut(s)	425, 578
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	2 cut(s)	444, 726
BlsI	GCNGC	2 cut(s)	445, 727
Bme1390I	CCNGG	2 cut(s)	549, 609
BmeT110I	CYCGRG	1 cut(s)	411
BmiI	GGNNCC	2 cut(s)	105, 695
BmrFI	CCNGG	2 cut(s)	549, 609
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	710
BpuEI	CTTGAG	3 cut(s)	153, 168, 517
BsaBI	GATNNNNATC	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	740
Bse118I	RCCGGY	1 cut(s)	690
Bse8I	GATNNNNATC	1 cut(s)	465
BseBI	CCWGG	2 cut(s)	549, 609
BseDI	CCNNGG	1 cut(s)	740
BseGI	GGATG	3 cut(s)	61, 195, 379
BseJI	GATNNNNATC	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	2 cut(s)	430, 712
BshFI	GGCC	2 cut(s)	566, 626
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	691
BslFI	GGGAC	1 cut(s)	472
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	2 cut(s)	566, 626
BsoBI	CYCGRG	1 cut(s)	411
Bsp143I	GATC	8 cut(s)	103, 334, 376, 544, 574, 604, 634, 652
BspACI	CCGC	2 cut(s)	48, 457
BspANI	GGCC	2 cut(s)	566, 626
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	105, 695
BspPI	GGATC	5 cut(s)	98, 111, 539, 599, 629
BsrBI	CCGCTC	1 cut(s)	457
BsrFI	RCCGGY	1 cut(s)	690
BssAI	RCCGGY	1 cut(s)	690
BssECI	CCNNGG	1 cut(s)	740
BssMI	GATC	8 cut(s)	103, 334, 376, 544, 574, 604, 634, 652
BssSI	CACGAG	1 cut(s)	10
Bst2BI	CACGAG	1 cut(s)	10
Bst2UI	CCWGG	2 cut(s)	549, 609
Bst6I	CTCTTC	2 cut(s)	308, 381
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstC8I	GCNNGC	1 cut(s)	668
BstDEI	CTNAG	3 cut(s)	132, 267, 447
BstF5I	GGATG	3 cut(s)	61, 195, 379
BstKTI	GATC	8 cut(s)	106, 337, 379, 547, 577, 607, 637, 655
BstMBI	GATC	8 cut(s)	103, 334, 376, 544, 574, 604, 634, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	722
BstNI	CCWGG	2 cut(s)	549, 609
BstSCI	CCNGG	2 cut(s)	547, 607
BstV1I	GCAGC	2 cut(s)	430, 712
BstV2I	GAAGAC	1 cut(s)	710
BstX2I	RGATCY	5 cut(s)	103, 544, 574, 604, 634
BstYI	RGATCY	5 cut(s)	103, 544, 574, 604, 634
BsuRI	GGCC	2 cut(s)	566, 626
BtsCI	GGATG	3 cut(s)	61, 195, 379
Cac8I	GCNNGC	1 cut(s)	668
Cfr10I	RCCGGY	1 cut(s)	690
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	1 cut(s)	100
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	3 cut(s)	132, 267, 447
DpnI	GATC	8 cut(s)	105, 336, 378, 546, 576, 606, 636, 654
DpnII	GATC	8 cut(s)	103, 334, 376, 544, 574, 604, 634, 652
Eam1104I	CTCTTC	2 cut(s)	308, 381
EarI	CTCTTC	2 cut(s)	308, 381
Eco32I	GATATC	1 cut(s)	7
Eco57I	CTGAAG	2 cut(s)	405, 618
Eco88I	CYCGRG	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	547, 607
EcoRV	GATATC	1 cut(s)	7
FaeI	CATG	1 cut(s)	103
FaiI	YATR	6 cut(s)	101, 192, 284, 333, 506, 758
FalI	AAGNNNNNCTT	2 cut(s)	744, 776
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	1 cut(s)	99
FauI	CCCGC	2 cut(s)	41, 450
Fnu4HI	GCNGC	2 cut(s)	444, 726
FokI	GGATG	3 cut(s)	68, 182, 386
Fsp4HI	GCNGC	2 cut(s)	444, 726
FspBI	CTAG	2 cut(s)	425, 578
GluI	GCNGC	2 cut(s)	444, 726
HaeIII	GGCC	2 cut(s)	566, 626
HapII	CCGG	1 cut(s)	691
Hin1II	CATG	1 cut(s)	103
HinfI	GANTC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	691
HphI	GGTGA	2 cut(s)	49, 305
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	7 cut(s)	87, 123, 200, 232, 253, 698, 737
Hpy188III	TCNNGA	5 cut(s)	10, 170, 413, 638, 748
Hpy8I	GTNNAC	1 cut(s)	296
HpyAV	CCTTC	6 cut(s)	34, 38, 46, 117, 186, 227
HpyCH4V	TGCA	3 cut(s)	504, 716, 764
HpyF10VI	GCNNNNNNNGC	1 cut(s)	722
HpyF3I	CTNAG	3 cut(s)	132, 267, 447
Hsp92II	CATG	1 cut(s)	103
Kzo9I	GATC	8 cut(s)	103, 334, 376, 544, 574, 604, 634, 652
LmnI	GCTCC	2 cut(s)	415, 454
Lsp1109I	GCAGC	2 cut(s)	430, 712
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	425, 578
MalI	GATC	8 cut(s)	105, 336, 378, 546, 576, 606, 636, 654
MbiI	CCGCTC	1 cut(s)	457
MboI	GATC	8 cut(s)	103, 334, 376, 544, 574, 604, 634, 652
MflI	RGATCY	5 cut(s)	103, 544, 574, 604, 634
MluCI	AATT	5 cut(s)	32, 209, 245, 362, 684
MmeI	TCCRAC	2 cut(s)	65, 721
MnlI	CCTC	8 cut(s)	102, 105, 177, 303, 309, 444, 673, 750
MseI	TTAA	3 cut(s)	287, 356, 799
MspI	CCGG	1 cut(s)	691
MspR9I	CCNGG	2 cut(s)	549, 609
MvaI	CCWGG	2 cut(s)	549, 609
MwoI	GCNNNNNNNGC	1 cut(s)	722
NdeII	GATC	8 cut(s)	103, 334, 376, 544, 574, 604, 634, 652
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	105, 695
NmeAIII	GCCGAG	1 cut(s)	721
PcsI	WCGNNNNNNNCGW	1 cut(s)	694
PfeI	GAWTC	1 cut(s)	88
PfoI	TCCNGGA	2 cut(s)	547, 607
PkrI	GCNGC	2 cut(s)	445, 727
Psp6I	CCWGG	2 cut(s)	547, 607
PspGI	CCWGG	2 cut(s)	547, 607
PspN4I	GGNNCC	2 cut(s)	105, 695
PsuI	RGATCY	5 cut(s)	103, 544, 574, 604, 634
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SaqAI	TTAA	3 cut(s)	287, 356, 799
SatI	GCNGC	2 cut(s)	444, 726
Sau3AI	GATC	8 cut(s)	103, 334, 376, 544, 574, 604, 634, 652
ScrFI	CCNGG	2 cut(s)	549, 609
SetI	ASST	9 cut(s)	169, 205, 307, 320, 430, 537, 684, 712, 742
SfaNI	GCATC	1 cut(s)	114
SmlI	CTYRAG	3 cut(s)	168, 183, 496
SmoI	CTYRAG	3 cut(s)	168, 183, 496
Sse9I	AATT	5 cut(s)	32, 209, 245, 362, 684
SsiI	CCGC	2 cut(s)	48, 457
SspMI	CTAG	2 cut(s)	425, 578
StyD4I	CCNGG	2 cut(s)	547, 607
TaqI	TCGA	2 cut(s)	537, 749
TasI	AATT	5 cut(s)	32, 209, 245, 362, 684
TatI	WGTACW	1 cut(s)	187
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	3 cut(s)	287, 356, 799
Tru9I	TTAA	3 cut(s)	287, 356, 799
TseI	GCWGC	2 cut(s)	443, 725
XapI	RAATTY	3 cut(s)	209, 245, 362
XspI	CTAG	2 cut(s)	425, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.