Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008064

Physical Location & Seq

Genomic Coordinates Forward (+)

87543188 .. 87544557

Gene Structure 1370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG659800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGACCACAAAGTGGTTCGTCACTTGCTTTCTCCCTATGGAGAGTTGGATAAGATCTATCTTGTACCCAGAAACCCTTCTTCTCAGGTCAAAAAACGTGACCGCCCCGGTAAACACCAAATGGATAGTTATTCAGAAGGGTGGGTTGAATTTAAAGATAAAAGGGTTGCTAAGAGAGTTGCTAATATGCTAAATGGTGAAAAAATAGGTGGGAAGAAGAGGTCCGCTTTCTACTATGATCTTTGGAATATCAAGTACTTGAGTAAATTCAAGTGGGATGATCTTACCGGAGAGATAGCTTTCAAGAACGCCGAGCGGGAGCAAAAGCTAGCTTTAGAAATTTCTGCTGCTAAGAAGGAGCAGGATTTCTACATCTCCAAGGTTGACACGTCTCGTAAGTTGAGTGCCATAGAAGAAAGAATGAAGAAGAAGCGGAAGGTCCAAGAGGAGTCAGGAACCACTCCTGATGTGCCTGTAGACCAGCCACTGAAGGTAGTTCGCCAATTTCGACAGAAAACACCAGTTGCAGATAGTGCTGCAGAAAAGAAACCTTCAGTCTCTAGAGATCTATTGGCAGGGGTATTTGGTAGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

198

Amino Acids

22.79

Weight (kDa)

9.77

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56510 AT3G56510 AT3G56510 AT3G56510 AT3G56510
fragaria_vesca	FvH4_6g52000
malus_domestica	MD09G1021000.v1.1 MD09G1021200.v1.1 MD17G1021200.v1.1
prunus_persica	Prupe.3G295300_v2.0.a1 Prupe.3G295300_v2.0.a1
pyrus_communis	pycom111g01760
rosa_chinensis	RchiOBHm_Chr2g0173471
rosa_laevigata	RLG00000022193
rosa_multiflora	Rmu_co8499485.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078820
rosa_rugosa	Rorug02G0570800 Rorug02G0570900 Rorug02G0571000
rosa_samantha	Rh2AG649200 Rh2BG659800 Rh2CG625000 Rh2DG674900
rosa_wichuraiana	Rw2G053300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	13
AccBSI	CCGCTC	1 cut(s)	316
AccI	GTMKAC	1 cut(s)	477
AciI	CCGC	4 cut(s)	103, 225, 316, 433
AcsI	RAATTY	3 cut(s)	149, 266, 339
AcuI	CTGAAG	2 cut(s)	509, 537
AdeI	CACNNNGTG	1 cut(s)	13
AfaI	GTAC	2 cut(s)	66, 257
AfiI	CCNNNNNNNGG	1 cut(s)	13
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	3 cut(s)	149, 271, 304
AjiI	CACGTC	1 cut(s)	390
AluBI	AGCT	3 cut(s)	299, 328, 332
AluI	AGCT	3 cut(s)	299, 328, 332
Alw26I	GTCTC	2 cut(s)	396, 562
AlwNI	CAGNNNCTG	1 cut(s)	487
ApeKI	GCWGC	2 cut(s)	347, 536
ApoI	RAATTY	3 cut(s)	149, 266, 339
Asp700I	GAANNNNTTC	1 cut(s)	76
AspS9I	GGNCC	3 cut(s)	4, 222, 439
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	209
AsuNHI	GCTAGC	1 cut(s)	328
AvaII	GGWCC	3 cut(s)	4, 222, 439
BbvI	GCAGC	2 cut(s)	334, 523
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	396, 562
BfaI	CTAG	2 cut(s)	329, 561
BfmI	CTRYAG	2 cut(s)	474, 537
BglII	AGATCT	2 cut(s)	54, 565
BisI	GCNGC	2 cut(s)	348, 537
BlsI	GCNGC	2 cut(s)	349, 538
BmcAI	AGTACT	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	3 cut(s)	4, 222, 439
BmgBI	CACGTC	1 cut(s)	390
BmgT120I	GGNCC	3 cut(s)	4, 222, 439
BmiI	GGNNCC	1 cut(s)	457
BmrFI	CCNGG	1 cut(s)	108
BmtI	GCTAGC	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	280
BpuMI	CCSGG	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	106, 378
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
Bse1I	ACTGG	1 cut(s)	521
BseDI	CCNNGG	2 cut(s)	106, 378
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	521
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	2 cut(s)	334, 523
BsiSI	CCGG	2 cut(s)	108, 288
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmAI	GTCTC	2 cut(s)	396, 562
BsmBI	CGTCTC	1 cut(s)	396
Bsp143I	GATC	4 cut(s)	54, 238, 280, 565
BspACI	CCGC	4 cut(s)	103, 225, 316, 433
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	457
BspMAI	CTGCAG	1 cut(s)	541
BspOI	GCTAGC	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	521
BssECI	CCNNGG	2 cut(s)	106, 378
BssMI	GATC	4 cut(s)	54, 238, 280, 565
BssT1I	CCWWGG	1 cut(s)	378
Bst6I	CTCTTC	1 cut(s)	212
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	4 cut(s)	84, 171, 351, 594
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	4 cut(s)	57, 241, 283, 568
BstMAI	GTCTC	2 cut(s)	396, 562
BstMBI	GATC	4 cut(s)	54, 238, 280, 565
BstMWI	GCNNNNNNNGC	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	106
BstSFI	CTRYAG	2 cut(s)	474, 537
BstV1I	GCAGC	2 cut(s)	334, 523
BstX2I	RGATCY	2 cut(s)	54, 565
BstYI	RGATCY	2 cut(s)	54, 565
BtrI	CACGTC	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	485
Cac8I	GCNNGC	1 cut(s)	330
CaiI	CAGNNNCTG	1 cut(s)	487
Cfr13I	GGNCC	3 cut(s)	4, 222, 439
Csp6I	GTAC	2 cut(s)	65, 256
CviJI	RGCY	4 cut(s)	299, 328, 332, 484
CviKI_1	RGCY	4 cut(s)	299, 328, 332, 484
CviQI	GTAC	2 cut(s)	65, 256
DdeI	CTNAG	4 cut(s)	84, 171, 351, 594
DpnI	GATC	4 cut(s)	56, 240, 282, 567
DpnII	GATC	4 cut(s)	54, 238, 280, 565
DraI	TTTAAA	1 cut(s)	154
DraIII	CACNNNGTG	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	378
Eco47I	GGWCC	3 cut(s)	4, 222, 439
Eco57I	CTGAAG	2 cut(s)	509, 537
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	396
FaiI	YATR	4 cut(s)	39, 188, 237, 410
FauI	CCCGC	1 cut(s)	309
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	2 cut(s)	348, 537
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	2 cut(s)	348, 537
FspBI	CTAG	2 cut(s)	329, 561
GluI	GCNGC	2 cut(s)	348, 537
HapII	CCGG	2 cut(s)	108, 288
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	1 cut(s)	449
HpaII	CCGG	2 cut(s)	108, 288
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	3 cut(s)	113, 385, 478
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	4 cut(s)	304, 453, 464, 561
Hpy8I	GTNNAC	3 cut(s)	113, 385, 478
HpyAV	CCTTC	6 cut(s)	87, 131, 349, 430, 484, 561
HpyCH4IV	ACGT	2 cut(s)	97, 389
HpyCH4V	TGCA	2 cut(s)	527, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	533
HpyF3I	CTNAG	4 cut(s)	84, 171, 351, 594
HpySE526I	ACGT	2 cut(s)	97, 389
Kzo9I	GATC	4 cut(s)	54, 238, 280, 565
LmnI	GCTCC	2 cut(s)	319, 358
Lsp1109I	GCAGC	2 cut(s)	334, 523
MaeI	CTAG	2 cut(s)	329, 561
MaeII	ACGT	2 cut(s)	97, 389
MaeIII	GTNAC	2 cut(s)	20, 98
MalI	GATC	4 cut(s)	56, 240, 282, 567
MbiI	CCGCTC	1 cut(s)	316
MboI	GATC	4 cut(s)	54, 238, 280, 565
MboII	GAAGA	6 cut(s)	72, 226, 229, 425, 436, 439
MflI	RGATCY	2 cut(s)	54, 565
MluCI	AATT	4 cut(s)	149, 266, 339, 503
MlyI	GAGTC	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	2 cut(s)	213, 439
MroXI	GAANNNNTTC	1 cut(s)	76
MseI	TTAA	1 cut(s)	153
MspI	CCGG	2 cut(s)	108, 288
MspR9I	CCNGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	533
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	4 cut(s)	54, 238, 280, 565
NheI	GCTAGC	1 cut(s)	328
NlaIV	GGNNCC	1 cut(s)	457
NmeAIII	GCCGAG	1 cut(s)	337
NmuCI	GTSAC	2 cut(s)	20, 98
PcsI	WCGNNNNNNNCGW	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	76
PflMI	CCANNNNNTGG	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	349, 538
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
PspN4I	GGNNCC	1 cut(s)	457
PspPI	GGNCC	3 cut(s)	4, 222, 439
PstI	CTGCAG	1 cut(s)	541
PstNI	CAGNNNCTG	1 cut(s)	487
PsuI	RGATCY	2 cut(s)	54, 565
RsaI	GTAC	2 cut(s)	66, 257
RsaNI	GTAC	2 cut(s)	65, 256
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	2 cut(s)	348, 537
Sau3AI	GATC	4 cut(s)	54, 238, 280, 565
Sau96I	GGNCC	3 cut(s)	4, 222, 439
ScaI	AGTACT	1 cut(s)	257
SchI	GAGTC	1 cut(s)	458
ScrFI	CCNGG	1 cut(s)	108
SfcI	CTRYAG	2 cut(s)	474, 537
SinI	GGWCC	3 cut(s)	4, 222, 439
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	4 cut(s)	149, 266, 339, 503
SsiI	CCGC	4 cut(s)	103, 225, 316, 433
SspMI	CTAG	2 cut(s)	329, 561
StyD4I	CCNGG	1 cut(s)	106
StyI	CCWWGG	1 cut(s)	378
TaiI	ACGT	2 cut(s)	100, 392
TaqI	TCGA	1 cut(s)	508
TasI	AATT	4 cut(s)	149, 266, 339, 503
TatI	WGTACW	1 cut(s)	255
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	492
TseFI	GTSAC	2 cut(s)	20, 98
TseI	GCWGC	2 cut(s)	347, 536
Tsp45I	GTSAC	2 cut(s)	20, 98
TspDTI	ATGAA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	492
Van91I	CCANNNNNTGG	1 cut(s)	13
VpaK11BI	GGWCC	3 cut(s)	4, 222, 439
XapI	RAATTY	3 cut(s)	149, 266, 339
XbaI	TCTAGA	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	76
XspI	CTAG	2 cut(s)	329, 561
ZrmI	AGTACT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.