Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008064

Physical Location & Seq

Genomic Coordinates Forward (+)

38442080 .. 38445363

Gene Structure 3284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGACGTCACCAATCCCAAAAAGAAGAAGAAGCCTTTGTCTCCCGGGGTGTGCTATTTGGGTAGGATCCCACCTCGCATGGACCACAAAGTCGTCCGTCACTTGCTTTCTCCCTACGGCGAGTTGGATAAGATCTATCTCGTTCCCAGAAACCCTTCTGCACCGGCCAAGAACCGCGACCGCCCCGGTAAATACCAAACGGAGAGTTTCTCGGAAGGGTGGGTTGAGTTTAAAGATAAAAGGGTTGCTAAAAGAGTTGCGAGTATGCTAAATGGTGAAAAGATAGGTGGGAAGAAGAGGTCAGCTTTCTACTATGATCTTTGGAATATCAAGTACTTGAGTAAATTCAAGTGGGATGATCTTACGGGAGAGATAGCCTACAAGAACGCAGAGAGGGAGCAAAAGCTAGCGATGGAAATTTCTGCTGCTAAGAAGGAGCAAGAGTTCTACCTCTCAAAGGTTGAATCGTCTCGTAAGTTGAGTGCCATAGAAGAAAGAATGAAGAAGAAGAGGAAGGTCCAAGAAGAGTCAGGAACCGCCCCTGATGTGCCTGTAGAACAGCCACTGAAGTTGGTTCGCCAATTTCGACAGAAATCACCAGTTGCAGATGGTGCTGCCAAAAAGAAACCTTCAATCTCTAGAGATCTATTGGCAGGGGTATTTGGTAGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

225

Amino Acids

25.59

Weight (kDa)

9.92

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56510 AT3G56510 AT3G56510 AT3G56510 AT3G56510
fragaria_vesca	FvH4_6g52000
malus_domestica	MD09G1021000.v1.1 MD09G1021200.v1.1 MD17G1021200.v1.1
prunus_persica	Prupe.3G295300_v2.0.a1 Prupe.3G295300_v2.0.a1
pyrus_communis	pycom111g01760
rosa_chinensis	RchiOBHm_Chr2g0173471
rosa_laevigata	RLG00000022193
rosa_multiflora	Rmu_co8499485.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078820
rosa_rugosa	Rorug02G0570800 Rorug02G0570900 Rorug02G0571000
rosa_samantha	Rh2AG649200 Rh2BG659800 Rh2CG625000 Rh2DG674900
rosa_wichuraiana	Rw2G053300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AatII	GACGTC	1 cut(s)	9
AccII	CGCG	1 cut(s)	177
AciI	CCGC	3 cut(s)	175, 181, 537
AclWI	GGATC	2 cut(s)	61, 74
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	2 cut(s)	344, 417
AcuI	CTGAAG	1 cut(s)	587
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	3 cut(s)	349, 464, 633
AloI	GAACNNNNNNTCC	2 cut(s)	428, 460
AluBI	AGCT	2 cut(s)	305, 406
AluI	AGCT	2 cut(s)	305, 406
Alw26I	GTCTC	2 cut(s)	45, 474
AlwI	GGATC	2 cut(s)	61, 74
AlwNI	CAGNNNCTG	1 cut(s)	565
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	2 cut(s)	425, 614
ApoI	RAATTY	2 cut(s)	344, 417
Asp700I	GAANNNNTTC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	82, 517
AsuC2I	CCSGG	3 cut(s)	45, 46, 186
AsuHPI	GGTGA	2 cut(s)	287, 588
AsuNHI	GCTAGC	1 cut(s)	406
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	2 cut(s)	82, 517
BamHI	GGATCC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	412, 601
BccI	CCATC	2 cut(s)	406, 602
BceAI	ACGGC	1 cut(s)	133
BcnI	CCSGG	3 cut(s)	45, 46, 186
BcoDI	GTCTC	2 cut(s)	45, 474
BfaI	CTAG	2 cut(s)	407, 639
BfmI	CTRYAG	1 cut(s)	552
BglII	AGATCT	2 cut(s)	132, 643
BisI	GCNGC	2 cut(s)	426, 615
BlsI	GCNGC	2 cut(s)	427, 616
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	3 cut(s)	45, 46, 186
Bme18I	GGWCC	2 cut(s)	82, 517
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	2 cut(s)	82, 517
BmiI	GGNNCC	2 cut(s)	68, 535
BmrFI	CCNGG	3 cut(s)	45, 46, 186
BmtI	GCTAGC	1 cut(s)	410
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpuEI	CTTGAG	1 cut(s)	358
BpuMI	CCSGG	3 cut(s)	45, 46, 186
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	3 cut(s)	44, 45, 184
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	599
BseDI	CCNNGG	3 cut(s)	44, 45, 184
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseNI	ACTGG	1 cut(s)	599
BseXI	GCAGC	2 cut(s)	412, 601
BsgI	GTGCAG	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	45, 164, 186
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	2 cut(s)	45, 474
BsmBI	CGTCTC	1 cut(s)	474
BsnI	GGCC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	44
Bsp143I	GATC	5 cut(s)	66, 132, 316, 358, 643
BspACI	CCGC	3 cut(s)	175, 181, 537
BspANI	GGCC	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	68, 535
BspOI	GCTAGC	1 cut(s)	410
BspPI	GGATC	2 cut(s)	61, 74
BsrFI	RCCGGY	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	599
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	3 cut(s)	44, 45, 184
BssMI	GATC	5 cut(s)	66, 132, 316, 358, 643
BssNI	GRCGYC	1 cut(s)	6
Bst6I	CTCTTC	3 cut(s)	290, 503, 519
BstACI	GRCGYC	1 cut(s)	6
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	1 cut(s)	429
BstENI	CCTNNNNNAGG	1 cut(s)	455
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	1 cut(s)	177
BstKTI	GATC	5 cut(s)	69, 135, 319, 361, 646
BstMAI	GTCTC	2 cut(s)	45, 474
BstMBI	GATC	5 cut(s)	66, 132, 316, 358, 643
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	611
BstSCI	CCNGG	3 cut(s)	43, 44, 184
BstSFI	CTRYAG	1 cut(s)	552
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	412, 601
BstX2I	RGATCY	3 cut(s)	66, 132, 643
BstYI	RGATCY	3 cut(s)	66, 132, 643
BsuRI	GGCC	1 cut(s)	167
BtgZI	GCGATG	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	563
Cac8I	GCNNGC	1 cut(s)	408
CaiI	CAGNNNCTG	1 cut(s)	565
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	82, 517
Cfr9I	CCCGGG	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	334
CspCI	CAANNNNNGTGG	2 cut(s)	552, 587
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	6 cut(s)	34, 167, 305, 377, 406, 562
CviKI_1	RGCY	6 cut(s)	34, 167, 305, 377, 406, 562
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	5 cut(s)	68, 134, 318, 360, 645
DpnII	GATC	5 cut(s)	66, 132, 316, 358, 643
DraI	TTTAAA	1 cut(s)	232
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	3 cut(s)	290, 503, 519
EarI	CTCTTC	3 cut(s)	290, 503, 519
Eco47I	GGWCC	2 cut(s)	82, 517
Eco57I	CTGAAG	1 cut(s)	587
Eco88I	CYCGRG	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	455
Esp3I	CGTCTC	1 cut(s)	474
FaeI	CATG	1 cut(s)	82
FaiI	YATR	4 cut(s)	80, 266, 315, 488
FatI	CATG	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	426, 615
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	2 cut(s)	426, 615
FspBI	CTAG	2 cut(s)	407, 639
GluI	GCNGC	2 cut(s)	426, 615
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	3 cut(s)	45, 164, 186
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	82
HinfI	GANTC	2 cut(s)	464, 527
HpaII	CCGG	3 cut(s)	45, 164, 186
HphI	GGTGA	2 cut(s)	287, 588
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	2 cut(s)	531, 639
HpyAV	CCTTC	5 cut(s)	165, 209, 427, 508, 639
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	2 cut(s)	161, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	611
HpyF3I	CTNAG	1 cut(s)	429
HpySE526I	ACGT	1 cut(s)	6
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	82
Kzo9I	GATC	5 cut(s)	66, 132, 316, 358, 643
LmnI	GCTCC	2 cut(s)	397, 436
LpnPI	CCDG	9 cut(s)	58, 160, 177, 199, 516, 555, 564, 612, 639
Lsp1109I	GCAGC	2 cut(s)	412, 601
MaeI	CTAG	2 cut(s)	407, 639
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	7, 98
MalI	GATC	5 cut(s)	68, 134, 318, 360, 645
MboI	GATC	5 cut(s)	66, 132, 316, 358, 643
MboII	GAAGA	9 cut(s)	37, 40, 304, 307, 503, 514, 517, 520, 536
MflI	RGATCY	3 cut(s)	66, 132, 643
MluCI	AATT	3 cut(s)	344, 417, 581
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	5 cut(s)	84, 291, 387, 461, 504
MroXI	GAANNNNTTC	1 cut(s)	154
MseI	TTAA	2 cut(s)	231, 673
MspI	CCGG	3 cut(s)	45, 164, 186
MspR9I	CCNGG	3 cut(s)	45, 46, 186
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	611
NciI	CCSGG	3 cut(s)	45, 46, 186
NdeII	GATC	5 cut(s)	66, 132, 316, 358, 643
NheI	GCTAGC	1 cut(s)	406
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	2 cut(s)	68, 535
NmuCI	GTSAC	2 cut(s)	7, 98
PcsI	WCGNNNNNNNCGW	1 cut(s)	583
PdmI	GAANNNNTTC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	464
PkrI	GCNGC	2 cut(s)	427, 616
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
PspN4I	GGNNCC	2 cut(s)	68, 535
PspPI	GGNCC	2 cut(s)	82, 517
PstNI	CAGNNNCTG	1 cut(s)	565
PsuI	RGATCY	3 cut(s)	66, 132, 643
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SaqAI	TTAA	2 cut(s)	231, 673
SatI	GCNGC	2 cut(s)	426, 615
Sau3AI	GATC	5 cut(s)	66, 132, 316, 358, 643
Sau96I	GGNCC	2 cut(s)	82, 517
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	3 cut(s)	45, 46, 186
SfcI	CTRYAG	1 cut(s)	552
SinI	GGWCC	2 cut(s)	82, 517
SmaI	CCCGGG	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	3 cut(s)	344, 417, 581
SsiI	CCGC	3 cut(s)	175, 181, 537
SspMI	CTAG	2 cut(s)	407, 639
StyD4I	CCNGG	3 cut(s)	43, 44, 184
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	1 cut(s)	586
TasI	AATT	3 cut(s)	344, 417, 581
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	2 cut(s)	231, 673
Tru9I	TTAA	2 cut(s)	231, 673
TscAI	CASTG	1 cut(s)	570
TseFI	GTSAC	2 cut(s)	7, 98
TseI	GCWGC	2 cut(s)	425, 614
Tsp45I	GTSAC	2 cut(s)	7, 98
TspDTI	ATGAA	1 cut(s)	515
TspGWI	ACGGA	2 cut(s)	86, 215
TspMI	CCCGGG	1 cut(s)	44
TspRI	CASTG	1 cut(s)	570
VpaK11BI	GGWCC	2 cut(s)	82, 517
XagI	CCTNNNNNAGG	1 cut(s)	455
XapI	RAATTY	2 cut(s)	344, 417
XbaI	TCTAGA	1 cut(s)	638
XmaI	CCCGGG	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	154
XspI	CTAG	2 cut(s)	407, 639
ZraI	GACGTC	1 cut(s)	7
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.