Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008064

Physical Location & Seq

Genomic Coordinates Forward (+)

86850304 .. 86851801

Gene Structure 1498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG649200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGATGTCACCAAGCCCAAAAAGAAGAAATCTTTGTCCCCCGGGGTCTGCTATTTGGGTAGGATCCCTCCTCGCATGGACCACAAAGTGGTTCGTCACTTGCTTTCTCCCTATGGAGAGTTGGATAAGATCTATCTTGTACCCAGAAACCCTTCTTCTCAGGTCAAAAAACGTGACCGCCCCGGTAAACACCAAATGGATAGTTATTCAGAAGGGTGGGTTGAATTTAAAGATAAAAGGGTTGCTAAGAGAGTTGCTAATATGCTAAATGGTGAAAAAATAGGTGGGAAGAAGAGGTCCGCTTTCTACTATGATCTTTGGAATATCAAGTACTTGAGTAAATTCAAGTGGGATGATCTTACCGGAGAGATAGCTTTCAAGAACGCCGAGCGGGAGCAAAAGCTAGCTTTAGAAATTTCTGCTGCTAAGAAGGAGCAGGATTTCTACATCTCCAAGGTTGACACGTCTCGTAAGTTGAGTGCCATAGAAGAAAGAATGAAGAAGAAGCGGAAGGTCCAAGAGGAGTCAGGAACCACTCCTGATGTGCCTGTAGACCAGCCACTGAAGGTAGTTCGCCAATTTCGACAGAAAACACCAGTTGCAGATAGTGCTGCAGAAAAGAAACCTTCAGTCTCTAGAGATCTATTGGCAGGGTTCTTAGTGCTCGACTTTCACCTCAAGTGGAGCTCGAAAGCCGAATTCCAAAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

237

Amino Acids

27.36

Weight (kDa)

9.86

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56510 AT3G56510 AT3G56510 AT3G56510 AT3G56510
fragaria_vesca	FvH4_6g52000
malus_domestica	MD09G1021000.v1.1 MD09G1021200.v1.1 MD17G1021200.v1.1
prunus_persica	Prupe.3G295300_v2.0.a1 Prupe.3G295300_v2.0.a1
pyrus_communis	pycom111g01760
rosa_chinensis	RchiOBHm_Chr2g0173471
rosa_laevigata	RLG00000022193
rosa_multiflora	Rmu_co8499485.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078820
rosa_rugosa	Rorug02G0570800 Rorug02G0570900 Rorug02G0571000
rosa_samantha	Rh2AG649200 Rh2BG659800 Rh2CG625000 Rh2DG674900
rosa_wichuraiana	Rw2G053300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	391
AccI	GTMKAC	1 cut(s)	552
AciI	CCGC	4 cut(s)	178, 300, 391, 508
AclWI	GGATC	2 cut(s)	58, 71
AcsI	RAATTY	4 cut(s)	224, 341, 414, 698
AcuI	CTGAAG	2 cut(s)	584, 612
AdeI	CACNNNGTG	1 cut(s)	88
AfaI	GTAC	2 cut(s)	141, 332
AfiI	CCNNNNNNNGG	1 cut(s)	88
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	3 cut(s)	224, 346, 379
AjiI	CACGTC	1 cut(s)	465
AluBI	AGCT	4 cut(s)	374, 403, 407, 687
AluI	AGCT	4 cut(s)	374, 403, 407, 687
Alw21I	GWGCWC	2 cut(s)	666, 689
Alw26I	GTCTC	2 cut(s)	471, 637
AlwI	GGATC	2 cut(s)	58, 71
AlwNI	CAGNNNCTG	1 cut(s)	562
Ama87I	CYCGRG	1 cut(s)	41
ApeKI	GCWGC	2 cut(s)	422, 611
ApoI	RAATTY	4 cut(s)	224, 341, 414, 698
Asp700I	GAANNNNTTC	1 cut(s)	151
AspS9I	GGNCC	3 cut(s)	79, 297, 514
AsuC2I	CCSGG	3 cut(s)	42, 43, 183
AsuHPI	GGTGA	2 cut(s)	284, 665
AsuNHI	GCTAGC	1 cut(s)	403
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	3 cut(s)	79, 297, 514
BamHI	GGATCC	1 cut(s)	63
BanII	GRGCYC	1 cut(s)	689
Bbv12I	GWGCWC	2 cut(s)	666, 689
BbvI	GCAGC	2 cut(s)	409, 598
BcnI	CCSGG	3 cut(s)	42, 43, 183
BcoDI	GTCTC	2 cut(s)	471, 637
BfaI	CTAG	2 cut(s)	404, 636
BfmI	CTRYAG	2 cut(s)	549, 612
BglII	AGATCT	2 cut(s)	129, 640
BisI	GCNGC	2 cut(s)	423, 612
BlsI	GCNGC	2 cut(s)	424, 613
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	3 cut(s)	42, 43, 183
Bme18I	GGWCC	3 cut(s)	79, 297, 514
BmeT110I	CYCGRG	1 cut(s)	41
BmgBI	CACGTC	1 cut(s)	465
BmgT120I	GGNCC	3 cut(s)	79, 297, 514
BmiI	GGNNCC	2 cut(s)	65, 532
BmrFI	CCNGG	3 cut(s)	42, 43, 183
BmtI	GCTAGC	1 cut(s)	407
BpuEI	CTTGAG	2 cut(s)	355, 662
BpuMI	CCSGG	3 cut(s)	42, 43, 183
BsaJI	CCNNGG	5 cut(s)	40, 41, 42, 181, 453
BsaWI	WCCGGW	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	596
BseDI	CCNNGG	5 cut(s)	40, 41, 42, 181, 453
BseGI	GGATG	2 cut(s)	10, 358
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	596
BseRI	GAGGAG	2 cut(s)	60, 536
BseXI	GCAGC	2 cut(s)	409, 598
BsiHKAI	GWGCWC	2 cut(s)	666, 689
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	3 cut(s)	42, 183, 363
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	2 cut(s)	471, 637
BsmBI	CGTCTC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	41
Bsp1286I	GDGCHC	2 cut(s)	666, 689
Bsp143I	GATC	5 cut(s)	63, 129, 313, 355, 640
BspACI	CCGC	4 cut(s)	178, 300, 391, 508
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	65, 532
BspMAI	CTGCAG	1 cut(s)	616
BspOI	GCTAGC	1 cut(s)	407
BspPI	GGATC	2 cut(s)	58, 71
BsrBI	CCGCTC	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	596
BssECI	CCNNGG	5 cut(s)	40, 41, 42, 181, 453
BssMI	GATC	5 cut(s)	63, 129, 313, 355, 640
BssT1I	CCWWGG	1 cut(s)	453
Bst6I	CTCTTC	1 cut(s)	287
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	4 cut(s)	159, 246, 426, 658
BstF5I	GGATG	2 cut(s)	10, 358
BstKTI	GATC	5 cut(s)	66, 132, 316, 358, 643
BstMAI	GTCTC	2 cut(s)	471, 637
BstMBI	GATC	5 cut(s)	63, 129, 313, 355, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	608
BstSCI	CCNGG	3 cut(s)	40, 41, 181
BstSFI	CTRYAG	2 cut(s)	549, 612
BstV1I	GCAGC	2 cut(s)	409, 598
BstX2I	RGATCY	3 cut(s)	63, 129, 640
BstYI	RGATCY	3 cut(s)	63, 129, 640
BtrI	CACGTC	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	10, 358
BtsIMutI	CAGTG	1 cut(s)	560
Cac8I	GCNNGC	1 cut(s)	405
CaiI	CAGNNNCTG	1 cut(s)	562
Cfr13I	GGNCC	3 cut(s)	79, 297, 514
Cfr9I	CCCGGG	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	140, 331
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	7 cut(s)	16, 374, 403, 407, 559, 687, 695
CviKI_1	RGCY	7 cut(s)	16, 374, 403, 407, 559, 687, 695
CviQI	GTAC	2 cut(s)	140, 331
DdeI	CTNAG	4 cut(s)	159, 246, 426, 658
DpnI	GATC	5 cut(s)	65, 131, 315, 357, 642
DpnII	GATC	5 cut(s)	63, 129, 313, 355, 640
DraI	TTTAAA	1 cut(s)	229
DraIII	CACNNNGTG	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Ecl136II	GAGCTC	1 cut(s)	687
Eco130I	CCWWGG	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	689
Eco47I	GGWCC	3 cut(s)	79, 297, 514
Eco53kI	GAGCTC	1 cut(s)	687
Eco57I	CTGAAG	2 cut(s)	584, 612
Eco88I	CYCGRG	1 cut(s)	41
EcoICRI	GAGCTC	1 cut(s)	687
EcoRI	GAATTC	1 cut(s)	698
EcoT14I	CCWWGG	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	689
ErhI	CCWWGG	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	471
FaeI	CATG	1 cut(s)	79
FaiI	YATR	5 cut(s)	77, 114, 263, 312, 485
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	1 cut(s)	75
FauI	CCCGC	1 cut(s)	384
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	2 cut(s)	423, 612
FokI	GGATG	2 cut(s)	17, 365
FriOI	GRGCYC	1 cut(s)	689
Fsp4HI	GCNGC	2 cut(s)	423, 612
FspBI	CTAG	2 cut(s)	404, 636
GluI	GCNGC	2 cut(s)	423, 612
HapII	CCGG	3 cut(s)	42, 183, 363
Hin1II	CATG	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	1 cut(s)	524
HpaII	CCGG	3 cut(s)	42, 183, 363
HphI	GGTGA	2 cut(s)	284, 665
Hpy166II	GTNNAC	3 cut(s)	188, 460, 553
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	4 cut(s)	379, 528, 539, 636
Hpy8I	GTNNAC	3 cut(s)	188, 460, 553
HpyAV	CCTTC	6 cut(s)	162, 206, 424, 505, 559, 636
HpyCH4IV	ACGT	2 cut(s)	172, 464
HpyCH4V	TGCA	2 cut(s)	602, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	608
HpyF3I	CTNAG	4 cut(s)	159, 246, 426, 658
HpySE526I	ACGT	2 cut(s)	172, 464
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	5 cut(s)	63, 129, 313, 355, 640
LmnI	GCTCC	3 cut(s)	394, 433, 684
Lsp1109I	GCAGC	2 cut(s)	409, 598
MaeI	CTAG	2 cut(s)	404, 636
MaeII	ACGT	2 cut(s)	172, 464
MaeIII	GTNAC	3 cut(s)	7, 95, 173
MalI	GATC	5 cut(s)	65, 131, 315, 357, 642
MbiI	CCGCTC	1 cut(s)	391
MboI	GATC	5 cut(s)	63, 129, 313, 355, 640
MboII	GAAGA	7 cut(s)	37, 147, 301, 304, 500, 511, 514
MflI	RGATCY	3 cut(s)	63, 129, 640
MhlI	GDGCHC	2 cut(s)	666, 689
MluCI	AATT	5 cut(s)	224, 341, 414, 578, 698
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	5 cut(s)	78, 81, 288, 514, 686
MroXI	GAANNNNTTC	1 cut(s)	151
MseI	TTAA	1 cut(s)	228
MspI	CCGG	3 cut(s)	42, 183, 363
MspR9I	CCNGG	3 cut(s)	42, 43, 183
MwoI	GCNNNNNNNGC	1 cut(s)	608
NciI	CCSGG	3 cut(s)	42, 43, 183
NdeII	GATC	5 cut(s)	63, 129, 313, 355, 640
NheI	GCTAGC	1 cut(s)	403
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	2 cut(s)	65, 532
NmeAIII	GCCGAG	1 cut(s)	412
NmuCI	GTSAC	3 cut(s)	7, 95, 173
PcsI	WCGNNNNNNNCGW	1 cut(s)	580
PdmI	GAANNNNTTC	1 cut(s)	151
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	424, 613
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
Psp124BI	GAGCTC	1 cut(s)	689
PspN4I	GGNNCC	2 cut(s)	65, 532
PspPI	GGNCC	3 cut(s)	79, 297, 514
PstI	CTGCAG	1 cut(s)	616
PstNI	CAGNNNCTG	1 cut(s)	562
PsuI	RGATCY	3 cut(s)	63, 129, 640
RsaI	GTAC	2 cut(s)	141, 332
RsaNI	GTAC	2 cut(s)	140, 331
SacI	GAGCTC	1 cut(s)	689
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	423, 612
Sau3AI	GATC	5 cut(s)	63, 129, 313, 355, 640
Sau96I	GGNCC	3 cut(s)	79, 297, 514
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	3 cut(s)	42, 43, 183
SduI	GDGCHC	2 cut(s)	666, 689
SfcI	CTRYAG	2 cut(s)	549, 612
SinI	GGWCC	3 cut(s)	79, 297, 514
SmaI	CCCGGG	1 cut(s)	43
SmlI	CTYRAG	2 cut(s)	334, 677
SmoI	CTYRAG	2 cut(s)	334, 677
Sse9I	AATT	5 cut(s)	224, 341, 414, 578, 698
SsiI	CCGC	4 cut(s)	178, 300, 391, 508
SspMI	CTAG	2 cut(s)	404, 636
SstI	GAGCTC	1 cut(s)	689
StyD4I	CCNGG	3 cut(s)	40, 41, 181
StyI	CCWWGG	1 cut(s)	453
TaiI	ACGT	2 cut(s)	175, 467
TaqI	TCGA	3 cut(s)	583, 666, 689
TasI	AATT	5 cut(s)	224, 341, 414, 578, 698
TatI	WGTACW	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	567
TseFI	GTSAC	3 cut(s)	7, 95, 173
TseI	GCWGC	2 cut(s)	422, 611
Tsp45I	GTSAC	3 cut(s)	7, 95, 173
TspDTI	ATGAA	1 cut(s)	512
TspMI	CCCGGG	1 cut(s)	41
TspRI	CASTG	1 cut(s)	567
Van91I	CCANNNNNTGG	1 cut(s)	88
VpaK11BI	GGWCC	3 cut(s)	79, 297, 514
XapI	RAATTY	4 cut(s)	224, 341, 414, 698
XbaI	TCTAGA	1 cut(s)	635
XmaI	CCCGGG	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	552
XmnI	GAANNNNTTC	1 cut(s)	151
XspI	CTAG	2 cut(s)	404, 636
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.