Rorug02G0570800

Pre-rRNA-processing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008064
Physical Location & Seq
Forward (+)
69703490 .. 69705048
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0570800.1

Sequence Viewer

Length: 1368 bp
ATGGCACACCCAAACTCTCTAATTGTGGTCGAGGTTTGTAGAGTGGCTCCAGTTACAGGCTCACCGGATTTTCCCACACTGGATCAGTCCCTCCCTCTAACTCTATTTGATCTACGCTGGCTAAGGTTTAAACCCGTAGAACGCCTCTACTTCTACGAAACATCTTCCCCTGATTCCATACTTCCCAAACTCAAAACCTCACTCTCTCTCATTCTCCAACACTTTCTTCCTCTCGCCGGAAAACTAATTTGGCCCCTAAACTCTCTCAAACCCATTCTCAGTTATGTCCAAGGAGACACCGTTTCACTCACTATAGCCGAGTCGGATGCTGAAAATTTCAACCATCTTTCAAACAACGTCTTTGTTGAACCCAAAGGGTACCATCCTCTTGTTCCCAAATTGGATGTCTCTTACGAACGAGCCGCAGCCATGGCATTGCAAATCACTCTCTTTCCCAATCGTGGCTTTTCCATTGGAACAACAATGCACCATGCCATCCTTGATGGAAAAACTTCAACCTCGTTTGTCAAATCTTGGGCTCACATATGCAAAAATGAATCATCTCCAACTTCTTTGCTCCCGGAGCAGCTCAAACCGTTCTATGAAAGAGTTGTCATCCAGGACCGGAAGGGACTCGGAGAACTCTACTCAAGCCAATACCTAAACAGGGAAGGGCCAAATAACAGGAGCTTAATGCTTCTTTTACCGCCTAGCCAAGCTCTTCCACAAGACTTGATTCGAGGCACCTTCGAGCTCACGAAAACAAATGTACAAACTCTAAGAGAGCGTGTGATGAATACCTTGGCGAAGAAGAAACAAAATGATGAGGAGGGTTCAGTACTACTTCATTTGTCGACATTTTCTCTAGCTTGTGCCCATACATGGGTTTGCTTAGCCAAGGCAGAGGAAATCAAAGGTGGAAAAACGGTGTTGATCTTTAGTGTGGACTGTAGATCTCGCTTGGACCCTTCCATACCCGAAACCTATTTCGGGAATTGCATAGTAGGCCGTGTAGCGGTTGCAGAAACAGAAGGGCTATTGGGTGAAGATGGGTTATTTGTGGCCGTAAATGCAATCACTGAGGCTTTGAGAAGTTTGGATGATGGGATTTTCAATGGGGCAGAGAATTGGGTTTCGAAATTCCTCAACTTTTCCCTCTATAAGAGAATATATTCGATTGCCCGTTCACAATGGTTTGGGGTTTATAACACTGATTTCGGATGGGGTAAACCGAAGAAGGTCGAGCTTGTTTCCATAGATAAGACTGAAGCAGTCTCTCTTTCAGATAGCAAGAATGGTGGTGGAGCTGTTGAGGTTGGATTGGCTTTGAAGAAACAATATATGGTCTTTTGTTTCTCTATTTCCTAG

Protein Analysis

455

Amino Acids

50.63

Weight (kDa)

7.6

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 22 - 450 6.3e-49 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1206
Acc65I GGTACC 1 cut(s) 378
AccB1I GGYRCC 2 cut(s) 378, 743
AccI GTMKAC 1 cut(s) 854
AciI CCGC 3 cut(s) 423, 707, 1016
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 1062
AcsI RAATTY 2 cut(s) 334, 1139
AcuI CTGAAG 1 cut(s) 1287
AfaI GTAC 3 cut(s) 380, 771, 840
AfiI CCNNNNNNNGG 8 cut(s) 56, 236, 461, 667, 882, 883, 990, 1015
AgsI TTSAA 6 cut(s) 340, 351, 368, 516, 1114, 1330
AjnI CCWGG 1 cut(s) 618
AjuI GAANNNNNNNTTGG 4 cut(s) 210, 232, 242, 264
AluBI AGCT 7 cut(s) 589, 690, 719, 754, 869, 1246, 1307
AluI AGCT 7 cut(s) 589, 690, 719, 754, 869, 1246, 1307
Alw21I GWGCWC 1 cut(s) 756
Alw26I GTCTC 3 cut(s) 288, 412, 1279
AlwI GGATC 1 cut(s) 90
AoxI GGCC 4 cut(s) 251, 674, 1006, 1062
ApeKI GCWGC 2 cut(s) 425, 586
ApoI RAATTY 2 cut(s) 334, 1139
ArsI GACNNNNNNTTYG 2 cut(s) 390, 422
Asp700I GAANNNNTTC 2 cut(s) 511, 1171
Asp718I GGTACC 1 cut(s) 378
AspS9I GGNCC 4 cut(s) 252, 622, 674, 964
AsuC2I CCSGG 1 cut(s) 581
AsuHPI GGTGA 2 cut(s) 54, 1055
AsuII TTCGAA 1 cut(s) 1136
AvaII GGWCC 2 cut(s) 622, 964
BaeGI GKGCMC 1 cut(s) 877
BanI GGYRCC 2 cut(s) 378, 743
BanII GRGCYC 2 cut(s) 541, 756
Bbv12I GWGCWC 1 cut(s) 756
BbvI GCAGC 2 cut(s) 437, 598
BccI CCATC 7 cut(s) 351, 390, 497, 503, 1043, 1097, 1215
BceAI ACGGC 2 cut(s) 993, 1049
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 1 cut(s) 620
BcnI CCSGG 1 cut(s) 581
BcoDI GTCTC 3 cut(s) 288, 412, 1279
BfaI CTAG 3 cut(s) 711, 866, 1366
BfmI CTRYAG 2 cut(s) 312, 949
BglII AGATCT 1 cut(s) 953
BisI GCNGC 3 cut(s) 423, 426, 587
BlpI GCTNAGC 1 cut(s) 892
BlsI GCNGC 3 cut(s) 424, 427, 588
BmcAI AGTACT 1 cut(s) 840
Bme1390I CCNGG 2 cut(s) 581, 620
Bme18I GGWCC 2 cut(s) 622, 964
BmgT120I GGNCC 4 cut(s) 252, 622, 674, 964
BmiI GGNNCC 5 cut(s) 48, 254, 380, 745, 966
BmrFI CCNGG 2 cut(s) 581, 620
BmsI GCATC 1 cut(s) 316
BpmI CTGGAG 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 122
Bpu1102I GCTNAGC 1 cut(s) 892
Bpu14I TTCGAA 1 cut(s) 1136
BpuEI CTTGAG 1 cut(s) 634
BpuMI CCSGG 1 cut(s) 581
BsaJI CCNNGG 4 cut(s) 289, 429, 801, 897
BsaWI WCCGGW 2 cut(s) 64, 624
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 8 cut(s) 56, 236, 461, 667, 882, 883, 990, 1015
Bse1I ACTGG 2 cut(s) 50, 84
Bse3DI GCAATG 1 cut(s) 434
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 4 cut(s) 289, 429, 801, 897
BseGI GGATG 7 cut(s) 331, 382, 409, 495, 615, 1105, 1226
BseLI CCNNNNNNNGG 8 cut(s) 56, 236, 461, 667, 882, 883, 990, 1015
BseMI GCAATG 1 cut(s) 434
BseMII CTCAG 2 cut(s) 292, 1071
BseNI ACTGG 2 cut(s) 50, 84
BseRI GAGGAG 1 cut(s) 842
BseSI GKGCMC 1 cut(s) 877
BseXI GCAGC 2 cut(s) 437, 598
BshFI GGCC 4 cut(s) 253, 676, 1008, 1064
BshNI GGYRCC 2 cut(s) 378, 743
BsiHKAI GWGCWC 1 cut(s) 756
BsiSI CCGG 4 cut(s) 65, 237, 581, 625
BslFI GGGAC 2 cut(s) 73, 645
BslI CCNNNNNNNGG 8 cut(s) 56, 236, 461, 667, 882, 883, 990, 1015
BsmAI GTCTC 3 cut(s) 288, 412, 1279
BsmFI GGGAC 2 cut(s) 73, 645
BsnI GGCC 4 cut(s) 253, 676, 1008, 1064
Bsp119I TTCGAA 1 cut(s) 1136
Bsp1286I GDGCHC 3 cut(s) 541, 756, 877
Bsp1407I TGTACA 1 cut(s) 769
Bsp143I GATC 4 cut(s) 82, 109, 933, 953
Bsp1720I GCTNAGC 1 cut(s) 892
Bsp19I CCATGG 1 cut(s) 429
BspACI CCGC 3 cut(s) 423, 707, 1016
BspANI GGCC 4 cut(s) 253, 676, 1008, 1064
BspCNI CTCAG 2 cut(s) 291, 1072
BspLI GGNNCC 5 cut(s) 48, 254, 380, 745, 966
BspPI GGATC 1 cut(s) 90
BspQI GCTCTTC 1 cut(s) 726
BspT104I TTCGAA 1 cut(s) 1136
BspT107I GGYRCC 2 cut(s) 378, 743
BsrDI GCAATG 1 cut(s) 434
BsrGI TGTACA 1 cut(s) 769
BsrI ACTGG 2 cut(s) 50, 84
BssECI CCNNGG 4 cut(s) 289, 429, 801, 897
BssMI GATC 4 cut(s) 82, 109, 933, 953
BssT1I CCWWGG 4 cut(s) 289, 429, 801, 897
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 4 cut(s) 301, 597, 928, 950
Bst6I CTCTTC 1 cut(s) 726
BstAUI TGTACA 1 cut(s) 769
BstBI TTCGAA 1 cut(s) 1136
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 5 cut(s) 122, 278, 779, 892, 1080
BstDSI CCRYGG 1 cut(s) 429
BstF5I GGATG 7 cut(s) 331, 382, 409, 495, 615, 1105, 1226
BstKTI GATC 4 cut(s) 85, 112, 936, 956
BstMAI GTCTC 3 cut(s) 288, 412, 1279
BstMBI GATC 4 cut(s) 82, 109, 933, 953
BstMWI GCNNNNNNNGC 4 cut(s) 431, 583, 1005, 1070
BstNI CCWGG 1 cut(s) 620
BstSCI CCNGG 2 cut(s) 579, 618
BstSFI CTRYAG 2 cut(s) 312, 949
BstSLI GKGCMC 1 cut(s) 877
BstV1I GCAGC 2 cut(s) 437, 598
BstX2I RGATCY 1 cut(s) 953
BstYI RGATCY 1 cut(s) 953
BsuRI GGCC 4 cut(s) 253, 676, 1008, 1064
BtgI CCRYGG 1 cut(s) 429
BtsCI GGATG 7 cut(s) 331, 382, 409, 495, 615, 1105, 1226
BtsIMutI CAGTG 3 cut(s) 77, 1077, 1209
Cac8I GCNNGC 1 cut(s) 119
Cfr13I GGNCC 4 cut(s) 252, 622, 674, 964
Csp6I GTAC 3 cut(s) 379, 770, 839
CspCI CAANNNNNGTGG 4 cut(s) 714, 749, 1279, 1314
CviAII CATG 3 cut(s) 430, 491, 882
CviQI GTAC 3 cut(s) 379, 770, 839
DdeI CTNAG 5 cut(s) 122, 278, 779, 892, 1080
DpnI GATC 4 cut(s) 84, 111, 935, 955
DpnII GATC 4 cut(s) 82, 109, 933, 953
DraI TTTAAA 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 1062
Eam1104I CTCTTC 1 cut(s) 726
EarI CTCTTC 1 cut(s) 726
Ecl136II GAGCTC 1 cut(s) 754
Eco130I CCWWGG 4 cut(s) 289, 429, 801, 897
Eco24I GRGCYC 2 cut(s) 541, 756
Eco47I GGWCC 2 cut(s) 622, 964
Eco53kI GAGCTC 1 cut(s) 754
Eco57I CTGAAG 1 cut(s) 1287
EcoICRI GAGCTC 1 cut(s) 754
EcoRII CCWGG 1 cut(s) 618
EcoT14I CCWWGG 4 cut(s) 289, 429, 801, 897
EcoT38I GRGCYC 2 cut(s) 541, 756
ErhI CCWWGG 4 cut(s) 289, 429, 801, 897
FaeI CATG 3 cut(s) 433, 494, 885
FaqI GGGAC 2 cut(s) 73, 645
FatI CATG 3 cut(s) 429, 490, 881
FauNDI CATATG 1 cut(s) 545
FblI GTMKAC 1 cut(s) 854
Fnu4HI GCNGC 3 cut(s) 423, 426, 587
FokI GGATG 7 cut(s) 338, 369, 416, 482, 602, 1112, 1233
FriOI GRGCYC 2 cut(s) 541, 756
Fsp4HI GCNGC 3 cut(s) 423, 426, 587
FspBI CTAG 3 cut(s) 711, 866, 1366
GluI GCNGC 3 cut(s) 423, 426, 587
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 4 cut(s) 253, 676, 1008, 1064
HapII CCGG 4 cut(s) 65, 237, 581, 625
Hin1II CATG 3 cut(s) 433, 494, 885
HincII GTYRAC 1 cut(s) 855
HindII GTYRAC 1 cut(s) 855
HinfI GANTC 5 cut(s) 173, 320, 557, 633, 736
HpaII CCGG 4 cut(s) 65, 237, 581, 625
HphI GGTGA 2 cut(s) 54, 1055
Hpy166II GTNNAC 4 cut(s) 855, 946, 1187, 1229
Hpy188I TCNGA 4 cut(s) 325, 638, 1220, 1285
Hpy188III TCNNGA 2 cut(s) 757, 991
Hpy8I GTNNAC 4 cut(s) 855, 946, 1187, 1229
HpyAV CCTTC 6 cut(s) 622, 665, 757, 978, 1025, 1231
HpyCH4III ACNGT 4 cut(s) 301, 597, 928, 950
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 6 cut(s) 439, 487, 549, 999, 1022, 1073
HpyF10VI GCNNNNNNNGC 4 cut(s) 431, 583, 1005, 1070
HpyF3I CTNAG 5 cut(s) 122, 278, 779, 892, 1080
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 3 cut(s) 433, 494, 885
KpnI GGTACC 1 cut(s) 382
Kzo9I GATC 4 cut(s) 82, 109, 933, 953
LguI GCTCTTC 1 cut(s) 726
LmnI GCTCC 5 cut(s) 52, 582, 583, 687, 1304
Lsp1109I GCAGC 2 cut(s) 437, 598
LweI GCATC 1 cut(s) 316
MaeI CTAG 3 cut(s) 711, 866, 1366
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 52
MalI GATC 4 cut(s) 84, 111, 935, 955
MboI GATC 4 cut(s) 82, 109, 933, 953
MboII GAAGA 8 cut(s) 156, 218, 713, 820, 823, 1058, 1246, 1342
MflI RGATCY 1 cut(s) 953
MhlI GDGCHC 3 cut(s) 541, 756, 877
MluCI AATT 7 cut(s) 21, 246, 334, 398, 994, 1126, 1139
MlyI GAGTC 2 cut(s) 329, 627
MmeI TCCRAC 4 cut(s) 241, 303, 590, 1297
MroXI GAANNNNTTC 2 cut(s) 511, 1171
MseI TTAA 2 cut(s) 129, 692
MspI CCGG 4 cut(s) 65, 237, 581, 625
MspR9I CCNGG 2 cut(s) 581, 620
MssI GTTTAAAC 1 cut(s) 130
MvaI CCWGG 1 cut(s) 620
MwoI GCNNNNNNNGC 4 cut(s) 431, 583, 1005, 1070
NciI CCSGG 1 cut(s) 581
NcoI CCATGG 1 cut(s) 429
NdeI CATATG 1 cut(s) 545
NdeII GATC 4 cut(s) 82, 109, 933, 953
NlaIII CATG 3 cut(s) 433, 494, 885
NlaIV GGNNCC 5 cut(s) 48, 254, 380, 745, 966
NmeAIII GCCGAG 1 cut(s) 343
NspV TTCGAA 1 cut(s) 1136
PciSI GCTCTTC 1 cut(s) 726
PdmI GAANNNNTTC 2 cut(s) 511, 1171
PfeI GAWTC 3 cut(s) 173, 557, 736
PfoI TCCNGGA 2 cut(s) 579, 618
PkrI GCNGC 3 cut(s) 424, 427, 588
PleI GAGTC 2 cut(s) 328, 627
PmeI GTTTAAAC 1 cut(s) 130
PpsI GAGTC 2 cut(s) 328, 627
PsiI TTATAA 1 cut(s) 1206
Psp124BI GAGCTC 1 cut(s) 756
Psp6I CCWGG 1 cut(s) 618
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 5 cut(s) 48, 254, 380, 745, 966
PspPI GGNCC 4 cut(s) 252, 622, 674, 964
PsuI RGATCY 1 cut(s) 953
RsaI GTAC 3 cut(s) 380, 771, 840
RsaNI GTAC 3 cut(s) 379, 770, 839
SacI GAGCTC 1 cut(s) 756
SalI GTCGAC 1 cut(s) 853
SapI GCTCTTC 1 cut(s) 726
SaqAI TTAA 2 cut(s) 129, 692
SatI GCNGC 3 cut(s) 423, 426, 587
Sau3AI GATC 4 cut(s) 82, 109, 933, 953
Sau96I GGNCC 4 cut(s) 252, 622, 674, 964
ScaI AGTACT 1 cut(s) 840
SchI GAGTC 2 cut(s) 329, 627
ScrFI CCNGG 2 cut(s) 581, 620
SduI GDGCHC 3 cut(s) 541, 756, 877
SfaNI GCATC 1 cut(s) 316
SfcI CTRYAG 2 cut(s) 312, 949
SfuI TTCGAA 1 cut(s) 1136
SinI GGWCC 2 cut(s) 622, 964
SmlI CTYRAG 1 cut(s) 649
SmoI CTYRAG 1 cut(s) 649
Sse9I AATT 7 cut(s) 21, 246, 334, 398, 994, 1126, 1139
SsiI CCGC 3 cut(s) 423, 707, 1016
SspMI CTAG 3 cut(s) 711, 866, 1366
SstI GAGCTC 1 cut(s) 756
StyD4I CCNGG 2 cut(s) 579, 618
StyI CCWWGG 4 cut(s) 289, 429, 801, 897
TaaI ACNGT 4 cut(s) 301, 597, 928, 950
TaiI ACGT 1 cut(s) 360
TaqI TCGA 7 cut(s) 30, 739, 750, 854, 1136, 1175, 1242
TasI AATT 7 cut(s) 21, 246, 334, 398, 994, 1126, 1139
TatI WGTACW 2 cut(s) 769, 838
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 3 cut(s) 173, 557, 736
Tru1I TTAA 2 cut(s) 129, 692
Tru9I TTAA 2 cut(s) 129, 692
TscAI CASTG 3 cut(s) 84, 1084, 1216
TseI GCWGC 2 cut(s) 425, 586
TspDTI ATGAA 4 cut(s) 570, 618, 809, 836
TspRI CASTG 3 cut(s) 84, 1084, 1216
VpaK11BI GGWCC 2 cut(s) 622, 964
XapI RAATTY 2 cut(s) 334, 1139
XmiI GTMKAC 1 cut(s) 854
XmnI GAANNNNTTC 2 cut(s) 511, 1171
XspI CTAG 3 cut(s) 711, 866, 1366
ZrmI AGTACT 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.