Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008064

Physical Location & Seq

Genomic Coordinates Forward (+)

81084485 .. 81086923

Gene Structure 2439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G053300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGATGTCACCAAGCCCAAAAAGAAGAAATCTTTGTCCCCCGGGGTCTGCTATTTGGGTAGGATCCCTCCTCGCATGGACCACAAAGTCGTTCGTCACTTGCTTTCTCCCTATGGAGAGTTGGATAAGATCTATCTTGTACCCAGAAACCCTTCTGCTCAGGTCAAAAAACGTGACCGCCCCGGTAAACACCAAATGGATAGTTATTCAGAAGGGTGGGTTGAATTTAAAGATAAAAGGGTTGCTAAGAGAGTTGCTAATATGCTAAATGGTGAAAAAATAGGTGGGAAGAAGAGGTCCGCTTTCTACTATGATCTTTGGAATATCAAGTACTTGAGTAAATTCAAGTGGGATGATCTTACCGGAGAGATAGCTTTCAAGAACGCCGAGCGGGAGCAAAAGCTAGCTTTAGAAATTTCTGCTGCTAAGAAGGAGCAGGATTTCTACATCTCCAAGGTTGACTCGTCTCGTAAGTTGAGTGCCATAGAAGAAAGAATGAAGAAGGTATGCTATCTGTATTATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

175

Amino Acids

20.51

Weight (kDa)

9.78

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56510 AT3G56510 AT3G56510 AT3G56510 AT3G56510
fragaria_vesca	FvH4_6g52000
malus_domestica	MD09G1021000.v1.1 MD09G1021200.v1.1 MD17G1021200.v1.1
prunus_persica	Prupe.3G295300_v2.0.a1 Prupe.3G295300_v2.0.a1
pyrus_communis	pycom111g01760
rosa_chinensis	RchiOBHm_Chr2g0173471
rosa_laevigata	RLG00000022193
rosa_multiflora	Rmu_co8499485.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078820
rosa_rugosa	Rorug02G0570800 Rorug02G0570900 Rorug02G0571000
rosa_samantha	Rh2AG649200 Rh2BG659800 Rh2CG625000 Rh2DG674900
rosa_wichuraiana	Rw2G053300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	391
AciI	CCGC	3 cut(s)	178, 300, 391
AclWI	GGATC	2 cut(s)	58, 71
AcsI	RAATTY	3 cut(s)	224, 341, 414
AfaI	GTAC	2 cut(s)	141, 332
AgsI	TTSAA	3 cut(s)	224, 346, 379
AluBI	AGCT	3 cut(s)	374, 403, 407
AluI	AGCT	3 cut(s)	374, 403, 407
Alw26I	GTCTC	1 cut(s)	471
AlwI	GGATC	2 cut(s)	58, 71
Ama87I	CYCGRG	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	3 cut(s)	224, 341, 414
Asp700I	GAANNNNTTC	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	79, 297
AsuC2I	CCSGG	3 cut(s)	42, 43, 183
AsuHPI	GGTGA	1 cut(s)	284
AsuNHI	GCTAGC	1 cut(s)	403
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	2 cut(s)	79, 297
BamHI	GGATCC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	409
BcnI	CCSGG	3 cut(s)	42, 43, 183
BcoDI	GTCTC	1 cut(s)	471
BfaI	CTAG	1 cut(s)	404
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	3 cut(s)	42, 43, 183
Bme18I	GGWCC	2 cut(s)	79, 297
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	79, 297
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	3 cut(s)	42, 43, 183
BmtI	GCTAGC	1 cut(s)	407
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	355
BpuMI	CCSGG	3 cut(s)	42, 43, 183
BsaJI	CCNNGG	5 cut(s)	40, 41, 42, 181, 453
BsaWI	WCCGGW	1 cut(s)	362
BseDI	CCNNGG	5 cut(s)	40, 41, 42, 181, 453
BseGI	GGATG	2 cut(s)	10, 358
BseMII	CTCAG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	409
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	3 cut(s)	42, 183, 363
BslFI	GGGAC	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	471
BsmBI	CGTCTC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	41
Bsp143I	GATC	4 cut(s)	63, 129, 313, 355
BspACI	CCGC	3 cut(s)	178, 300, 391
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	65
BspOI	GCTAGC	1 cut(s)	407
BspPI	GGATC	2 cut(s)	58, 71
BsrBI	CCGCTC	1 cut(s)	391
BssECI	CCNNGG	5 cut(s)	40, 41, 42, 181, 453
BssMI	GATC	4 cut(s)	63, 129, 313, 355
BssT1I	CCWWGG	1 cut(s)	453
Bst6I	CTCTTC	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	3 cut(s)	159, 246, 426
BstF5I	GGATG	2 cut(s)	10, 358
BstKTI	GATC	4 cut(s)	66, 132, 316, 358
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	4 cut(s)	63, 129, 313, 355
BstSCI	CCNGG	3 cut(s)	40, 41, 181
BstV1I	GCAGC	1 cut(s)	409
BstX2I	RGATCY	2 cut(s)	63, 129
BstYI	RGATCY	2 cut(s)	63, 129
BtsCI	GGATG	2 cut(s)	10, 358
Cac8I	GCNNGC	1 cut(s)	405
Cfr13I	GGNCC	2 cut(s)	79, 297
Cfr9I	CCCGGG	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	140, 331
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	4 cut(s)	16, 374, 403, 407
CviKI_1	RGCY	4 cut(s)	16, 374, 403, 407
CviQI	GTAC	2 cut(s)	140, 331
DdeI	CTNAG	3 cut(s)	159, 246, 426
DpnI	GATC	4 cut(s)	65, 131, 315, 357
DpnII	GATC	4 cut(s)	63, 129, 313, 355
DraI	TTTAAA	1 cut(s)	229
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	453
Eco47I	GGWCC	2 cut(s)	79, 297
Eco88I	CYCGRG	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	471
FaeI	CATG	1 cut(s)	79
FaiI	YATR	7 cut(s)	77, 114, 263, 312, 485, 508, 522
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	1 cut(s)	75
FauI	CCCGC	1 cut(s)	384
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	2 cut(s)	17, 365
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	1 cut(s)	423
HapII	CCGG	3 cut(s)	42, 183, 363
Hin1II	CATG	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	1 cut(s)	461
HpaII	CCGG	3 cut(s)	42, 183, 363
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	188, 460
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	1 cut(s)	379
Hpy8I	GTNNAC	2 cut(s)	188, 460
HpyAV	CCTTC	4 cut(s)	162, 206, 424, 496
HpyCH4IV	ACGT	1 cut(s)	172
HpyF3I	CTNAG	3 cut(s)	159, 246, 426
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	63, 129, 313, 355
LmnI	GCTCC	2 cut(s)	394, 433
LpnPI	CCDG	6 cut(s)	55, 146, 157, 196, 376, 422
Lsp1109I	GCAGC	1 cut(s)	409
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	3 cut(s)	7, 95, 173
MalI	GATC	4 cut(s)	65, 131, 315, 357
MbiI	CCGCTC	1 cut(s)	391
MboI	GATC	4 cut(s)	63, 129, 313, 355
MboII	GAAGA	5 cut(s)	37, 301, 304, 500, 511
MflI	RGATCY	2 cut(s)	63, 129
MluCI	AATT	3 cut(s)	224, 341, 414
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	3 cut(s)	78, 81, 288
MroXI	GAANNNNTTC	1 cut(s)	151
MseI	TTAA	1 cut(s)	228
MspI	CCGG	3 cut(s)	42, 183, 363
MspR9I	CCNGG	3 cut(s)	42, 43, 183
NciI	CCSGG	3 cut(s)	42, 43, 183
NdeII	GATC	4 cut(s)	63, 129, 313, 355
NheI	GCTAGC	1 cut(s)	403
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	65
NmeAIII	GCCGAG	1 cut(s)	412
NmuCI	GTSAC	3 cut(s)	7, 95, 173
PdmI	GAANNNNTTC	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	2 cut(s)	79, 297
PsuI	RGATCY	2 cut(s)	63, 129
RsaI	GTAC	2 cut(s)	141, 332
RsaNI	GTAC	2 cut(s)	140, 331
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	4 cut(s)	63, 129, 313, 355
Sau96I	GGNCC	2 cut(s)	79, 297
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	3 cut(s)	42, 43, 183
SetI	ASST	9 cut(s)	165, 175, 286, 299, 376, 405, 409, 459, 507
SinI	GGWCC	2 cut(s)	79, 297
SmaI	CCCGGG	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	3 cut(s)	224, 341, 414
SsiI	CCGC	3 cut(s)	178, 300, 391
SspMI	CTAG	1 cut(s)	404
StyD4I	CCNGG	3 cut(s)	40, 41, 181
StyI	CCWWGG	1 cut(s)	453
TaiI	ACGT	1 cut(s)	175
TasI	AATT	3 cut(s)	224, 341, 414
TatI	WGTACW	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseFI	GTSAC	3 cut(s)	7, 95, 173
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	3 cut(s)	7, 95, 173
TspDTI	ATGAA	1 cut(s)	512
TspMI	CCCGGG	1 cut(s)	41
VpaK11BI	GGWCC	2 cut(s)	79, 297
XapI	RAATTY	3 cut(s)	224, 341, 414
XmaI	CCCGGG	1 cut(s)	41
XmnI	GAANNNNTTC	1 cut(s)	151
XspI	CTAG	1 cut(s)	404
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.