Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008064

Physical Location & Seq

Genomic Coordinates Reverse (-)

1588014 .. 1589725

Gene Structure 1712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1021200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGAAATCGAAAGAAAGAACAAGAGGAAGAAATCGATGAAGGAAGGCGGGGAGGATGAGAAGCAGCGAGGGGTTTGCTACTTGGGTCGGATTCCGCCGCGCATGGATCCGTCGACGCTTCGCCAGATGCTCTCTCAGTACGGAGAGATACAGAGGCTTTATCTTGCACCCCAAGATTCTTCTGGTCACGTTCAAATCAAAGCTGGTAAATTTCAGAGGCAAAATTTTTCAGAAGGGTGGGTTGAATTTTCTGACAAAAGGGTTGCTAAGAGAGTTGCCAATATGTTAAATGGTGAACAGATAGGTGGGAAGAAGAGATCATCTTTCTACTATGATCTTTGGAACATCAAGTATTTGAGTAAATTCAAGTGGGATAATCTTACCGAAGAGATTGCTTACAAGAAAGCCACTCGGGAGCAAAAACTAGCTTTAGAAATTTCTGCTGCTAAGAAGGAGCGTGATTTCTATCTCACTAAAGTTGAGAAGTCCCGTGCTTTGAGTGCCATAGATGAAAGATTGATGAAGAGGCAAAGGATCGAAGAAGATTCAGGCGGCAATCCCGATCTCCCTAGTAGCCAGCCGGAACATCAGGTAATTCGCCGGTTCCGACAGAAGAAACCTGTAGCAAATAATGATGCAAAAACCAAACCTCGGCTCTCTAAAGATGTACTGTCATCGGTATTTGGCGATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

232

Amino Acids

26.87

Weight (kDa)

9.85

Isoelectric Point (pI)

58.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56510 AT3G56510 AT3G56510 AT3G56510 AT3G56510
fragaria_vesca	FvH4_6g52000
malus_domestica	MD09G1021000.v1.1 MD09G1021200.v1.1 MD17G1021200.v1.1
prunus_persica	Prupe.3G295300_v2.0.a1 Prupe.3G295300_v2.0.a1
pyrus_communis	pycom111g01760
rosa_chinensis	RchiOBHm_Chr2g0173471
rosa_laevigata	RLG00000022193
rosa_multiflora	Rmu_co8499485.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078820
rosa_rugosa	Rorug02G0570800 Rorug02G0570900 Rorug02G0571000
rosa_samantha	Rh2AG649200 Rh2BG659800 Rh2CG625000 Rh2DG674900
rosa_wichuraiana	Rw2G053300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	113
AccII	CGCG	1 cut(s)	100
AciI	CCGC	4 cut(s)	48, 95, 98, 552
AclWI	GGATC	3 cut(s)	101, 114, 542
AcsI	RAATTY	5 cut(s)	209, 223, 245, 362, 435
AfaI	GTAC	2 cut(s)	140, 669
AfiI	CCNNNNNNNGG	1 cut(s)	651
AgsI	TTSAA	3 cut(s)	194, 245, 367
AluBI	AGCT	2 cut(s)	203, 428
AluI	AGCT	2 cut(s)	203, 428
AlwI	GGATC	3 cut(s)	101, 114, 542
Ama87I	CYCGRG	1 cut(s)	411
ApeKI	GCWGC	2 cut(s)	64, 443
ApoI	RAATTY	5 cut(s)	209, 223, 245, 362, 435
AspLEI	GCGC	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	305
AvaI	CYCGRG	1 cut(s)	411
BamHI	GGATCC	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	76, 430
BcgI	CGANNNNNNTGC	4 cut(s)	57, 91, 374, 408
BfaI	CTAG	2 cut(s)	425, 570
BfmI	CTRYAG	1 cut(s)	621
BisI	GCNGC	4 cut(s)	65, 98, 444, 553
BlsI	GCNGC	4 cut(s)	66, 99, 445, 554
BmeT110I	CYCGRG	1 cut(s)	411
BmiI	GGNNCC	2 cut(s)	108, 605
BmsI	GCATC	2 cut(s)	117, 625
Bsa29I	ATCGAT	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	650
Bsc4I	CCNNNNNNNGG	1 cut(s)	651
Bse118I	RCCGGY	1 cut(s)	600
Bse8I	GATNNNNATC	1 cut(s)	465
BseCI	ATCGAT	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	650
BseGI	GGATG	1 cut(s)	61
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	651
BseMII	CTCAG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	76, 430
Bsh1236I	CGCG	1 cut(s)	100
BshVI	ATCGAT	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	581, 601
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	651
BsmFI	GGGAC	1 cut(s)	472
BsoBI	CYCGRG	1 cut(s)	411
Bsp143I	GATC	5 cut(s)	106, 317, 334, 534, 562
BspACI	CCGC	4 cut(s)	48, 95, 98, 552
BspCNI	CTCAG	1 cut(s)	148
BspDI	ATCGAT	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	108, 605
BspPI	GGATC	3 cut(s)	101, 114, 542
BsrFI	RCCGGY	1 cut(s)	600
BssAI	RCCGGY	1 cut(s)	600
BssECI	CCNNGG	1 cut(s)	650
BssMI	GATC	5 cut(s)	106, 317, 334, 534, 562
Bst4CI	ACNGT	1 cut(s)	672
Bst6I	CTCTTC	3 cut(s)	308, 381, 518
BstC8I	GCNNGC	1 cut(s)	578
BstDEI	CTNAG	3 cut(s)	135, 267, 447
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	5 cut(s)	109, 320, 337, 537, 565
BstMBI	GATC	5 cut(s)	106, 317, 334, 534, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstSFI	CTRYAG	1 cut(s)	621
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	76, 430
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
Bsu15I	ATCGAT	1 cut(s)	35
BsuTUI	ATCGAT	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	578
CfoI	GCGC	1 cut(s)	102
Cfr10I	RCCGGY	1 cut(s)	600
ClaI	ATCGAT	1 cut(s)	35
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	2 cut(s)	139, 668
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	7 cut(s)	157, 203, 407, 428, 576, 580, 655
CviKI_1	RGCY	7 cut(s)	157, 203, 407, 428, 576, 580, 655
CviQI	GTAC	2 cut(s)	139, 668
DdeI	CTNAG	3 cut(s)	135, 267, 447
DpnI	GATC	5 cut(s)	108, 319, 336, 536, 564
DpnII	GATC	5 cut(s)	106, 317, 334, 534, 562
Eam1104I	CTCTTC	3 cut(s)	308, 381, 518
EarI	CTCTTC	3 cut(s)	308, 381, 518
EciI	GGCGGA	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	411
FaeI	CATG	1 cut(s)	106
FaiI	YATR	5 cut(s)	104, 284, 333, 506, 694
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	1 cut(s)	102
FauI	CCCGC	1 cut(s)	41
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	4 cut(s)	65, 98, 444, 553
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	4 cut(s)	65, 98, 444, 553
FspBI	CTAG	2 cut(s)	425, 570
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	4 cut(s)	65, 98, 444, 553
HapII	CCGG	2 cut(s)	581, 601
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	4 cut(s)	91, 176, 545, 689
HpaII	CCGG	2 cut(s)	581, 601
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	2 cut(s)	114, 296
Hpy188I	TCNGA	5 cut(s)	90, 216, 232, 253, 608
Hpy188III	TCNNGA	2 cut(s)	413, 560
Hpy8I	GTNNAC	2 cut(s)	114, 296
Hpy99I	CGWCG	2 cut(s)	115, 118
HpyAV	CCTTC	4 cut(s)	34, 38, 227, 445
HpyCH4III	ACNGT	1 cut(s)	672
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	167, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	3 cut(s)	135, 267, 447
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	100
Kzo9I	GATC	5 cut(s)	106, 317, 334, 534, 562
LmnI	GCTCC	2 cut(s)	415, 454
LpnPI	CCDG	9 cut(s)	137, 168, 189, 534, 575, 590, 594, 614, 633
Lsp1109I	GCAGC	2 cut(s)	76, 430
LweI	GCATC	2 cut(s)	117, 625
MaeI	CTAG	2 cut(s)	425, 570
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	5 cut(s)	108, 319, 336, 536, 564
MboI	GATC	5 cut(s)	106, 317, 334, 534, 562
MboII	GAAGA	9 cut(s)	40, 171, 322, 325, 398, 535, 551, 554, 625
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	6 cut(s)	209, 223, 245, 362, 435, 594
MmeI	TCCRAC	2 cut(s)	68, 631
MnlI	CCTC	7 cut(s)	18, 46, 62, 147, 210, 519, 660
MseI	TTAA	1 cut(s)	287
MspI	CCGG	2 cut(s)	581, 601
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	500
NdeII	GATC	5 cut(s)	106, 317, 334, 534, 562
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	2 cut(s)	108, 605
NmeAIII	GCCGAG	1 cut(s)	631
NmuCI	GTSAC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	604
PfeI	GAWTC	4 cut(s)	91, 176, 545, 689
PkrI	GCNGC	4 cut(s)	66, 99, 445, 554
PspN4I	GGNNCC	2 cut(s)	108, 605
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	2 cut(s)	140, 669
RsaNI	GTAC	2 cut(s)	139, 668
SalI	GTCGAC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	4 cut(s)	65, 98, 444, 553
Sau3AI	GATC	5 cut(s)	106, 317, 334, 534, 562
SetI	ASST	7 cut(s)	192, 205, 307, 430, 594, 622, 652
SfaNI	GCATC	2 cut(s)	117, 625
SfcI	CTRYAG	1 cut(s)	621
SgrDI	CGTCGACG	1 cut(s)	112
Sse9I	AATT	6 cut(s)	209, 223, 245, 362, 435, 594
SsiI	CCGC	4 cut(s)	48, 95, 98, 552
SspMI	CTAG	2 cut(s)	425, 570
TaaI	ACNGT	1 cut(s)	672
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	4 cut(s)	9, 35, 113, 537
TasI	AATT	6 cut(s)	209, 223, 245, 362, 435, 594
TatI	WGTACW	1 cut(s)	667
TauI	GCSGC	2 cut(s)	100, 555
TfiI	GAWTC	4 cut(s)	91, 176, 545, 689
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	2 cut(s)	64, 443
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	4 cut(s)	53, 525, 536, 681
TspGWI	ACGGA	2 cut(s)	99, 156
XapI	RAATTY	5 cut(s)	209, 223, 245, 362, 435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	113
XspI	CTAG	2 cut(s)	425, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.