Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008064

Physical Location & Seq

Genomic Coordinates Reverse (-)

1277119 .. 1280149

Gene Structure 3031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1021200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAAATGGAGAGAAATAACAAAGGGAAGAAATCGATGGAGGAAGGCCGGAAGGATGAGAAGCAGCGAGGGGTTTGCTATTTGGGTCGGATTCCGCCGCGCATGGATCCGTCGACGCTTCGTCAGATGCTCTCTCAGTACGGAGAGATACAGAGGTGGGTTGAATTTTCTGACAAAAGGGTTGCTAAGAGAGTTGCTAATATGTTAAATGGTGAACAGATAGGTGGGAAGAAGAGGTCGTCTTTCTACTATGATCTTTGGAATATCAAGTACTTGAGTAAATTCAAGTGGGATAATCTTACTGAAGAGATTGCTTACAAGAAGCCACTCGGGAGCAAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

115

Amino Acids

13.56

Weight (kDa)

9.8

Isoelectric Point (pI)

57.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56510 AT3G56510 AT3G56510 AT3G56510 AT3G56510
fragaria_vesca	FvH4_6g52000
malus_domestica	MD09G1021000.v1.1 MD09G1021200.v1.1 MD17G1021200.v1.1
prunus_persica	Prupe.3G295300_v2.0.a1 Prupe.3G295300_v2.0.a1
pyrus_communis	pycom111g01760
rosa_chinensis	RchiOBHm_Chr2g0173471
rosa_laevigata	RLG00000022193
rosa_multiflora	Rmu_co8499485.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078820
rosa_rugosa	Rorug02G0570800 Rorug02G0570900 Rorug02G0571000
rosa_samantha	Rh2AG649200 Rh2BG659800 Rh2CG625000 Rh2DG674900
rosa_wichuraiana	Rw2G053300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	113
AccII	CGCG	1 cut(s)	100
AciI	CCGC	2 cut(s)	95, 98
AclWI	GGATC	2 cut(s)	101, 114
AcsI	RAATTY	2 cut(s)	164, 281
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	2 cut(s)	140, 272
AgsI	TTSAA	2 cut(s)	164, 286
AhdI	GACNNNNNGTC	1 cut(s)	120
AlwI	GGATC	2 cut(s)	101, 114
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	2 cut(s)	164, 281
AspLEI	GCGC	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	329
BaeI	ACNNNNGTAYC	2 cut(s)	140, 173
BamHI	GGATCC	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	57, 91
BfaI	CTAG	1 cut(s)	343
BisI	GCNGC	2 cut(s)	65, 98
BlsI	GCNGC	2 cut(s)	66, 99
BmcAI	AGTACT	1 cut(s)	272
BmeRI	GACNNNNNGTC	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	108
BmsI	GCATC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	295
Bsa29I	ATCGAT	1 cut(s)	35
BseCI	ATCGAT	1 cut(s)	35
BseGI	GGATG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	76
Bsh1236I	CGCG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	48
BshVI	ATCGAT	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	49
BsnI	GGCC	1 cut(s)	48
BsoBI	CYCGRG	1 cut(s)	329
Bsp143I	GATC	2 cut(s)	106, 253
BspACI	CCGC	2 cut(s)	95, 98
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	148
BspDI	ATCGAT	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	108
BspPI	GGATC	2 cut(s)	101, 114
BssMI	GATC	2 cut(s)	106, 253
Bst6I	CTCTTC	2 cut(s)	227, 300
BstDEI	CTNAG	2 cut(s)	135, 186
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	2 cut(s)	109, 256
BstMBI	GATC	2 cut(s)	106, 253
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
Bsu15I	ATCGAT	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	48
BsuTUI	ATCGAT	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	61
CfoI	GCGC	1 cut(s)	102
ClaI	ATCGAT	1 cut(s)	35
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	2 cut(s)	139, 271
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	2 cut(s)	48, 325
CviKI_1	RGCY	2 cut(s)	48, 325
CviQI	GTAC	2 cut(s)	139, 271
DdeI	CTNAG	2 cut(s)	135, 186
DpnI	GATC	2 cut(s)	108, 255
DpnII	GATC	2 cut(s)	106, 253
DriI	GACNNNNNGTC	1 cut(s)	120
Eam1104I	CTCTTC	2 cut(s)	227, 300
Eam1105I	GACNNNNNGTC	1 cut(s)	120
EarI	CTCTTC	2 cut(s)	227, 300
EciI	GGCGGA	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	329
FaeI	CATG	1 cut(s)	106
FaiI	YATR	3 cut(s)	104, 203, 252
FatI	CATG	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	2 cut(s)	65, 98
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	2 cut(s)	65, 98
FspBI	CTAG	1 cut(s)	343
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	2 cut(s)	65, 98
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	49
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	2 cut(s)	114, 215
Hpy188I	TCNGA	3 cut(s)	90, 126, 172
Hpy188III	TCNNGA	1 cut(s)	331
Hpy8I	GTNNAC	2 cut(s)	114, 215
Hpy99I	CGWCG	2 cut(s)	115, 118
HpyAV	CCTTC	2 cut(s)	38, 46
HpyF3I	CTNAG	2 cut(s)	135, 186
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	106, 253
LmnI	GCTCC	1 cut(s)	333
LpnPI	CCDG	1 cut(s)	62
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	343
MalI	GATC	2 cut(s)	108, 255
MboI	GATC	2 cut(s)	106, 253
MboII	GAAGA	4 cut(s)	40, 241, 244, 317
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	2 cut(s)	164, 281
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	4 cut(s)	34, 62, 147, 228
MseI	TTAA	1 cut(s)	206
MspI	CCGG	1 cut(s)	49
MvnI	CGCG	1 cut(s)	100
NdeII	GATC	2 cut(s)	106, 253
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	66, 99
PspN4I	GGNNCC	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	2 cut(s)	140, 272
RsaNI	GTAC	2 cut(s)	139, 271
SalI	GTCGAC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	2 cut(s)	65, 98
Sau3AI	GATC	2 cut(s)	106, 253
ScaI	AGTACT	1 cut(s)	272
SetI	ASST	3 cut(s)	158, 226, 239
SfaNI	GCATC	1 cut(s)	117
SgeI	CNNG	9 cut(s)	61, 80, 111, 115, 280, 286, 298, 331, 341
SgrDI	CGTCGACG	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	2 cut(s)	164, 281
SsiI	CCGC	2 cut(s)	95, 98
SspMI	CTAG	1 cut(s)	343
TaqI	TCGA	2 cut(s)	35, 113
TasI	AATT	2 cut(s)	164, 281
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TseI	GCWGC	1 cut(s)	64
TspGWI	ACGGA	2 cut(s)	99, 156
XapI	RAATTY	2 cut(s)	164, 281
XmiI	GTMKAC	1 cut(s)	113
XspI	CTAG	1 cut(s)	343
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.