Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008064

Physical Location & Seq

Genomic Coordinates Forward (+)

69706958 .. 69708458

Gene Structure 1501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0570900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCAATACAAACCACTCTCTTCCCAAACCGCGGCTTTTCCATTGGAACAACCATGCACCATGCCGTCCTGGACGGCAAAAACTCATGTTCCTTTTTCAAAGCATGGGCTCACATATGCAAACAAGGAACTGGAATCGGATCATCATCTTCTTCTATTTCACTACCGGATAATCTCAAACCATTTCACGACCGAATGGCCATCCACGACCCAAAGGGGCTCGGAGACCTCTTCTCGAATGAGTACCTCAACCGGGGAGGACCCAACAACAGGAGCGTGACGCATCGTCGTCCACCTAAAGCTCTTCCCCAAGACCTAGTTCGAGGGACCTTTGATTTCACACGAGCAAATATTCGAACACTTAGAGAGCATGTTGTGAAGACAACAAAGGCTTCTGATTCATCATCACTTCATTTGTCCACTTTTTCTCTAGGGTGTGCTTACACATGGATTTGCTTAGTCAAGGCCGAAGAAATAAAGGGAGAGAAGACGGCTATGATCTTCGGCGTGGACGCAAGGTCTCGCTTGGACCCTCCTGTACCGGAAACCTATTTTGGAAACTGCGTAGTGGGCCGTGTAGCAGTGGCCGAAACAAAAGGCCTAACCGGTGAAGATGGGTTGGTCGTGGCCGTAAAGGCAATCACTGAGGCCCTGAGGAGTTTGGACGACGGGGTTTTCAATGGGGCTGAGCTTTGGGTTTCTAAATTCCTCGACTTTTCGTTGTATGATAAGGTATATTCAATTGCGGGTTCACAGCGGTTTGAGGTTTACGGTACTGATTATGGATGGGGAAGGCCAAAGAAGTTCGAGCTCGTTTCGAACTTTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

276

Amino Acids

30.43

Weight (kDa)

9.04

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	1 - 267	4e-24	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56510 AT3G56510 AT3G56510 AT3G56510 AT3G56510
fragaria_vesca	FvH4_6g52000
malus_domestica	MD09G1021000.v1.1 MD09G1021200.v1.1 MD17G1021200.v1.1
prunus_persica	Prupe.3G295300_v2.0.a1 Prupe.3G295300_v2.0.a1
pyrus_communis	pycom111g01760
rosa_chinensis	RchiOBHm_Chr2g0173471
rosa_laevigata	RLG00000022193
rosa_multiflora	Rmu_co8499485.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078820
rosa_rugosa	Rorug02G0570800 Rorug02G0570900 Rorug02G0571000
rosa_samantha	Rh2AG649200 Rh2BG659800 Rh2CG625000 Rh2DG674900
rosa_wichuraiana	Rw2G053300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	33
AciI	CCGC	4 cut(s)	31, 33, 746, 757
AclWI	GGATC	1 cut(s)	148
AcoI	YGGCCR	3 cut(s)	198, 585, 627
AcsI	RAATTY	1 cut(s)	704
AfaI	GTAC	3 cut(s)	245, 540, 775
AfiI	CCNNNNNNNGG	3 cut(s)	32, 253, 270
AgeI	ACCGGT	1 cut(s)	605
AgsI	TTSAA	3 cut(s)	100, 679, 741
AhdI	GACNNNNNGTC	2 cut(s)	285, 517
AjnI	CCWGG	1 cut(s)	69
AjuI	GAANNNNNNNTTGG	4 cut(s)	303, 335, 537, 569
AluBI	AGCT	3 cut(s)	302, 691, 811
AluI	AGCT	3 cut(s)	302, 691, 811
Alw21I	GWGCWC	1 cut(s)	813
Alw26I	GTCTC	2 cut(s)	219, 525
AlwI	GGATC	1 cut(s)	148
AoxI	GGCC	8 cut(s)	198, 465, 571, 585, 598, 627, 648, 794
ApoI	RAATTY	1 cut(s)	704
AsiGI	ACCGGT	1 cut(s)	605
AspS9I	GGNCC	5 cut(s)	260, 327, 529, 571, 649
AsuC2I	CCSGG	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	620
AsuII	TTCGAA	2 cut(s)	355, 818
AvaII	GGWCC	3 cut(s)	260, 327, 529
AxyI	CCTNAGG	1 cut(s)	653
BalI	TGGCCA	1 cut(s)	200
BanII	GRGCYC	3 cut(s)	112, 222, 813
BauI	CACGAG	1 cut(s)	342
BbsI	GAAGAC	2 cut(s)	386, 494
Bbv12I	GWGCWC	1 cut(s)	813
BccI	CCATC	3 cut(s)	209, 608, 780
BceAI	ACGGC	5 cut(s)	50, 91, 507, 558, 614
BciT130I	CCWGG	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	254
BcoDI	GTCTC	2 cut(s)	219, 525
BfaI	CTAG	2 cut(s)	317, 431
BglI	GCCNNNNNGGC	1 cut(s)	635
BisI	GCNGC	1 cut(s)	34
BlpI	GCTNAGC	1 cut(s)	687
BlsI	GCNGC	1 cut(s)	35
Bme1390I	CCNGG	2 cut(s)	71, 254
Bme18I	GGWCC	3 cut(s)	260, 327, 529
BmeRI	GACNNNNNGTC	2 cut(s)	285, 517
BmgT120I	GGNCC	5 cut(s)	260, 327, 529, 571, 649
BmiI	GGNNCC	3 cut(s)	262, 328, 531
BmrFI	CCNGG	2 cut(s)	71, 254
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	2 cut(s)	386, 494
Bpu1102I	GCTNAGC	1 cut(s)	687
Bpu14I	TTCGAA	2 cut(s)	355, 818
BpuMI	CCSGG	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	145
BsaI	GGTCTC	2 cut(s)	219, 525
BsaJI	CCNNGG	2 cut(s)	31, 253
BsaWI	WCCGGW	3 cut(s)	166, 541, 605
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 253, 270
Bse118I	RCCGGY	1 cut(s)	605
Bse1I	ACTGG	1 cut(s)	136
Bse21I	CCTNAGG	1 cut(s)	653
Bse8I	GATNNNNATC	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	31, 253
BseGI	GGATG	2 cut(s)	201, 791
BseJI	GATNNNNATC	1 cut(s)	145
BseLI	CCNNNNNNNGG	3 cut(s)	32, 253, 270
BseMII	CTCAG	3 cut(s)	636, 644, 678
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	670
Bsh1236I	CGCG	1 cut(s)	33
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	8 cut(s)	200, 467, 573, 587, 600, 629, 650, 796
BshTI	ACCGGT	1 cut(s)	605
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	813
BsiSI	CCGG	4 cut(s)	167, 253, 542, 606
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	3 cut(s)	32, 253, 270
BsmAI	GTCTC	2 cut(s)	219, 525
BsmFI	GGGAC	1 cut(s)	340
BsnI	GGCC	8 cut(s)	200, 467, 573, 587, 600, 629, 650, 796
Bso31I	GGTCTC	2 cut(s)	219, 525
Bsp119I	TTCGAA	2 cut(s)	355, 818
Bsp1286I	GDGCHC	3 cut(s)	112, 222, 813
Bsp143I	GATC	2 cut(s)	140, 498
Bsp1720I	GCTNAGC	1 cut(s)	687
BspACI	CCGC	4 cut(s)	31, 33, 746, 757
BspANI	GGCC	8 cut(s)	200, 467, 573, 587, 600, 629, 650, 796
BspCNI	CTCAG	3 cut(s)	637, 645, 679
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	3 cut(s)	262, 328, 531
BspPI	GGATC	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	309
BspT104I	TTCGAA	2 cut(s)	355, 818
BspTNI	GGTCTC	2 cut(s)	219, 525
BsrFI	RCCGGY	1 cut(s)	605
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	605
BssECI	CCNNGG	2 cut(s)	31, 253
BssMI	GATC	2 cut(s)	140, 498
BssSI	CACGAG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	773
Bst6I	CTCTTC	3 cut(s)	26, 236, 309
BstBI	TTCGAA	2 cut(s)	355, 818
BstDEI	CTNAG	5 cut(s)	362, 457, 645, 653, 687
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	2 cut(s)	201, 791
BstFNI	CGCG	1 cut(s)	33
BstKTI	GATC	2 cut(s)	143, 501
BstMAI	GTCTC	2 cut(s)	219, 525
BstMBI	GATC	2 cut(s)	140, 498
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	2 cut(s)	570, 635
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	2 cut(s)	69, 252
BstUI	CGCG	1 cut(s)	33
BstV2I	GAAGAC	2 cut(s)	386, 494
Bsu36I	CCTNAGG	1 cut(s)	653
BsuRI	GGCC	8 cut(s)	200, 467, 573, 587, 600, 629, 650, 796
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	201, 791
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	2 cut(s)	588, 642
Cfr10I	RCCGGY	1 cut(s)	605
Cfr13I	GGNCC	5 cut(s)	260, 327, 529, 571, 649
Cfr42I	CCGCGG	1 cut(s)	34
CseI	GACGC	2 cut(s)	289, 521
Csp6I	GTAC	3 cut(s)	244, 539, 774
CspAI	ACCGGT	1 cut(s)	605
CviAII	CATG	6 cut(s)	55, 62, 87, 105, 371, 447
CviQI	GTAC	3 cut(s)	244, 539, 774
DdeI	CTNAG	5 cut(s)	362, 457, 645, 653, 687
DpnI	GATC	2 cut(s)	142, 500
DpnII	GATC	2 cut(s)	140, 498
DriI	GACNNNNNGTC	2 cut(s)	285, 517
EaeI	YGGCCR	3 cut(s)	198, 585, 627
Eam1104I	CTCTTC	3 cut(s)	26, 236, 309
Eam1105I	GACNNNNNGTC	2 cut(s)	285, 517
EarI	CTCTTC	3 cut(s)	26, 236, 309
Ecl136II	GAGCTC	1 cut(s)	811
Eco147I	AGGCCT	1 cut(s)	600
Eco24I	GRGCYC	3 cut(s)	112, 222, 813
Eco31I	GGTCTC	2 cut(s)	219, 525
Eco47I	GGWCC	3 cut(s)	260, 327, 529
Eco53kI	GAGCTC	1 cut(s)	811
Eco81I	CCTNAGG	1 cut(s)	653
EcoICRI	GAGCTC	1 cut(s)	811
EcoO109I	RGGNCCY	3 cut(s)	260, 327, 649
EcoRII	CCWGG	1 cut(s)	69
EcoT38I	GRGCYC	3 cut(s)	112, 222, 813
FaeI	CATG	6 cut(s)	58, 65, 90, 108, 374, 450
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	6 cut(s)	54, 61, 86, 104, 370, 446
FauI	CCCGC	1 cut(s)	739
FauNDI	CATATG	1 cut(s)	116
Fnu4HI	GCNGC	1 cut(s)	34
FokI	GGATG	2 cut(s)	188, 798
FriOI	GRGCYC	3 cut(s)	112, 222, 813
Fsp4HI	GCNGC	1 cut(s)	34
FspBI	CTAG	2 cut(s)	317, 431
GluI	GCNGC	1 cut(s)	34
HaeIII	GGCC	8 cut(s)	200, 467, 573, 587, 600, 629, 650, 796
HapII	CCGG	4 cut(s)	167, 253, 542, 606
HgaI	GACGC	2 cut(s)	289, 521
Hin1II	CATG	6 cut(s)	58, 65, 90, 108, 374, 450
HinfI	GANTC	2 cut(s)	135, 398
HpaII	CCGG	4 cut(s)	167, 253, 542, 606
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	5 cut(s)	293, 420, 511, 752, 769
Hpy188I	TCNGA	3 cut(s)	140, 224, 397
Hpy188III	TCNNGA	2 cut(s)	188, 235
Hpy8I	GTNNAC	5 cut(s)	293, 420, 511, 752, 769
Hpy99I	CGWCG	2 cut(s)	291, 671
HpyAV	CCTTC	1 cut(s)	786
HpyCH4III	ACNGT	1 cut(s)	773
HpyCH4V	TGCA	2 cut(s)	58, 120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	570, 635
HpyF3I	CTNAG	5 cut(s)	362, 457, 645, 653, 687
Hsp92II	CATG	6 cut(s)	58, 65, 90, 108, 374, 450
KspI	CCGCGG	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	140, 498
LguI	GCTCTTC	1 cut(s)	309
LmnI	GCTCC	1 cut(s)	273
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	2 cut(s)	317, 431
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	2 cut(s)	142, 500
MboI	GATC	2 cut(s)	140, 498
MfeI	CAATTG	1 cut(s)	741
MhlI	GDGCHC	3 cut(s)	112, 222, 813
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	2 cut(s)	704, 741
MluNI	TGGCCA	1 cut(s)	200
MnlI	CCTC	9 cut(s)	239, 251, 257, 317, 543, 640, 648, 719, 757
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	200
MspA1I	CMGCKG	2 cut(s)	33, 757
MspI	CCGG	4 cut(s)	167, 253, 542, 606
MspR9I	CCNGG	2 cut(s)	71, 254
MunI	CAATTG	1 cut(s)	741
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	570, 635
NciI	CCSGG	1 cut(s)	254
NdeI	CATATG	1 cut(s)	116
NdeII	GATC	2 cut(s)	140, 498
NlaIII	CATG	6 cut(s)	58, 65, 90, 108, 374, 450
NlaIV	GGNNCC	3 cut(s)	262, 328, 531
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	374
NspV	TTCGAA	2 cut(s)	355, 818
PceI	AGGCCT	1 cut(s)	600
PciSI	GCTCTTC	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	135, 398
PfoI	TCCNGGA	1 cut(s)	69
PinAI	ACCGGT	1 cut(s)	605
PkrI	GCNGC	1 cut(s)	35
PpuMI	RGGWCCY	2 cut(s)	260, 327
Psp124BI	GAGCTC	1 cut(s)	813
Psp5II	RGGWCCY	2 cut(s)	260, 327
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	3 cut(s)	262, 328, 531
PspPI	GGNCC	5 cut(s)	260, 327, 529, 571, 649
PspPPI	RGGWCCY	2 cut(s)	260, 327
RsaI	GTAC	3 cut(s)	245, 540, 775
RsaNI	GTAC	3 cut(s)	244, 539, 774
SacI	GAGCTC	1 cut(s)	813
SacII	CCGCGG	1 cut(s)	34
SapI	GCTCTTC	1 cut(s)	309
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	2 cut(s)	140, 498
Sau96I	GGNCC	5 cut(s)	260, 327, 529, 571, 649
ScrFI	CCNGG	2 cut(s)	71, 254
SduI	GDGCHC	3 cut(s)	112, 222, 813
SfaNI	GCATC	1 cut(s)	292
Sfr303I	CCGCGG	1 cut(s)	34
SfuI	TTCGAA	2 cut(s)	355, 818
SgrBI	CCGCGG	1 cut(s)	34
SinI	GGWCC	3 cut(s)	260, 327, 529
Sse9I	AATT	2 cut(s)	704, 741
SseBI	AGGCCT	1 cut(s)	600
SsiI	CCGC	4 cut(s)	31, 33, 746, 757
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	2 cut(s)	317, 431
SstI	GAGCTC	1 cut(s)	813
StuI	AGGCCT	1 cut(s)	600
StyD4I	CCNGG	2 cut(s)	69, 252
TaaI	ACNGT	1 cut(s)	773
TaqI	TCGA	7 cut(s)	236, 322, 355, 711, 807, 818, 826
TaqII	GACCGA	1 cut(s)	207
TasI	AATT	2 cut(s)	704, 741
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	2 cut(s)	135, 398
TscAI	CASTG	2 cut(s)	588, 649
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	390, 401
TspRI	CASTG	2 cut(s)	588, 649
VpaK11BI	GGWCC	3 cut(s)	260, 327, 529
XapI	RAATTY	1 cut(s)	704
XceI	RCATGY	1 cut(s)	374
XspI	CTAG	2 cut(s)	317, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.