AT3G56650

psbP domain-containing protein 6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012358
Physical Location & Seq
Forward (+)
20984635 .. 20986308
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56650.1

Sequence Viewer

Length: 789 bp
ATGGCGACTGCGTCTCTAGTTCCGACATCTAAAATCTTCTCTGTCTCTCCGAAATCCTCAGCTTCGATTAAAGCAAGGAGCAGAGTAGTTGTTGCATCGTCGCAACAACAACAACAACCAAGAAGGAGAGAGCTTCTGCTGAAATCGGCGGTGGCGATTCCGGCGATTCTGCAATTGAAGGAAGCTCCGATATCAGCGGCGCGTGAGGTGGAAGTTGGATCGTACTTACCTCTGTCTCCGTCTGATCCTTCTTTCGTCCTGTTTAAAGCCAAACCTTCAGATACTCCTGCTCTCCGCGCAGGAAATGTTCAGCCCTATCAGTTTGTTCTACCGCCGAATTGGAAACAGTTGCGAATAGCCAATATTTTGTCAGGTAATTACTGTCAACCGAAATGTGCAGAGCCATGGATCGAAGTGAAGTTTGAGAACGAGAAGCAAGGCAAGGTTCAAGTAGTTGCATCTCCTTTAATCCGCTTAACCAACAAACCAAATGCAACTATTGAAGATCTCGGTGAGCCTGAGAAAGTGATTGCTTCTCTTGGTCCTTTTGTCACCGGAAACTCTTATGACTCTGATGAACTTTTGAAGACTTCAATCGAAAAAATTGGAGATCAAACGTACTATAAGTATGTGTTGGAGACGCCATTTGCGCTCACGGGAAGTCACAATCTTGCAAAAGCGACAGCAAAGGGAAGCACGGTTGTTTTGTTTGTTGTAAGTGCTACTGAAAAGCAATGGCAGAGCTCACAGAAGACTCTTGAAGCCATTCTTGATTCTTTTCAACTGTAA

Protein Analysis

262

Amino Acids

28.63

Weight (kDa)

9.3

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 105 - 261 6.9e-12 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56650
fragaria_vesca FvH4_1g28660 FvH4_1g28660 FvH4_1g28660
malus_domestica MD03G1200900.v1.1
prunus_persica Prupe.4G213200_v2.0.a1
pyrus_communis pycom03g15240
rosa_chinensis RchiOBHm_Chr3g0492661 RchiOBHm_Chr3g0492671
rosa_laevigata RLG00000022751
rosa_multiflora Rmu_sc0000831.1_g000013
rosa_roxburghii Rroxscaffold_6G00392150
rosa_rugosa Rorug03G0255600
rosa_samantha Rh3AG305700 Rh3AG305800 Rh3BG342100 Rh3CG339500 Rh3DG341400
rosa_wichuraiana Rw3G026920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 202, 297
AciI CCGC 5 cut(s) 149, 197, 295, 332, 472
AclWI GGATC 3 cut(s) 226, 239, 416
AcuI CTGAAG 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 641
AfaI GTAC 2 cut(s) 224, 620
AgsI TTSAA 7 cut(s) 178, 449, 503, 586, 594, 761, 782
AluBI AGCT 4 cut(s) 62, 133, 185, 744
AluI AGCT 4 cut(s) 62, 133, 185, 744
Alw21I GWGCWC 1 cut(s) 746
Alw26I GTCTC 4 cut(s) 18, 49, 240, 632
AlwI GGATC 3 cut(s) 226, 239, 416
Asp700I GAANNNNTTC 1 cut(s) 765
AspLEI GCGC 3 cut(s) 202, 299, 652
AspS9I GGNCC 1 cut(s) 542
AsuHPI GGTGA 2 cut(s) 524, 544
AvaII GGWCC 1 cut(s) 542
BanII GRGCYC 1 cut(s) 746
BbsI GAAGAC 2 cut(s) 593, 758
Bbv12I GWGCWC 1 cut(s) 746
BbvCI CCTCAGC 1 cut(s) 58
BcoDI GTCTC 4 cut(s) 18, 49, 240, 632
BfaI CTAG 1 cut(s) 17
BglII AGATCT 1 cut(s) 505
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 542
BmgT120I GGNCC 1 cut(s) 542
BmsI GCATC 2 cut(s) 104, 467
BpiI GAAGAC 2 cut(s) 593, 758
Bpu10I CCTNAGC 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 641
BsaJI CCNNGG 1 cut(s) 404
BsaWI WCCGGW 1 cut(s) 554
Bse3DI GCAATG 1 cut(s) 740
BseDI CCNNGG 1 cut(s) 404
BseMI GCAATG 1 cut(s) 740
BseMII CTCAG 2 cut(s) 72, 510
BsgI GTGCAG 1 cut(s) 417
Bsh1236I CGCG 2 cut(s) 202, 297
BsiHKAI GWGCWC 1 cut(s) 746
BsiSI CCGG 2 cut(s) 161, 555
BsmAI GTCTC 4 cut(s) 18, 49, 240, 632
BsmBI CGTCTC 2 cut(s) 18, 632
Bsp1286I GDGCHC 1 cut(s) 746
Bsp143I GATC 5 cut(s) 218, 244, 408, 505, 610
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 5 cut(s) 149, 197, 295, 332, 472
BspCNI CTCAG 2 cut(s) 71, 511
BspFNI CGCG 2 cut(s) 202, 297
BspPI GGATC 3 cut(s) 226, 239, 416
BsrDI GCAATG 1 cut(s) 740
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 5 cut(s) 218, 244, 408, 505, 610
BssNI GRCGYC 1 cut(s) 641
BssT1I CCWWGG 1 cut(s) 404
Bst4CI ACNGT 4 cut(s) 348, 383, 700, 786
BstACI GRCGYC 1 cut(s) 641
BstDEI CTNAG 2 cut(s) 58, 519
BstDSI CCRYGG 1 cut(s) 404
BstFNI CGCG 2 cut(s) 202, 297
BstHHI GCGC 3 cut(s) 202, 299, 652
BstKTI GATC 5 cut(s) 221, 247, 411, 508, 613
BstMAI GTCTC 4 cut(s) 18, 49, 240, 632
BstMBI GATC 5 cut(s) 218, 244, 408, 505, 610
BstMWI GCNNNNNNNGC 3 cut(s) 161, 296, 649
BstUI CGCG 2 cut(s) 202, 297
BstV2I GAAGAC 2 cut(s) 593, 758
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
BtgI CCRYGG 1 cut(s) 404
CfoI GCGC 3 cut(s) 202, 299, 652
Cfr13I GGNCC 1 cut(s) 542
CseI GACGC 1 cut(s) 649
Csp6I GTAC 2 cut(s) 223, 619
CviAII CATG 1 cut(s) 405
CviQI GTAC 2 cut(s) 223, 619
DdeI CTNAG 2 cut(s) 58, 519
DpnI GATC 5 cut(s) 220, 246, 410, 507, 612
DpnII GATC 5 cut(s) 218, 244, 408, 505, 610
DraI TTTAAA 1 cut(s) 265
Ecl136II GAGCTC 1 cut(s) 744
Eco130I CCWWGG 1 cut(s) 404
Eco24I GRGCYC 1 cut(s) 746
Eco32I GATATC 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 542
Eco53kI GAGCTC 1 cut(s) 744
Eco57I CTGAAG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 744
EcoRV GATATC 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 404
EcoT38I GRGCYC 1 cut(s) 746
ErhI CCWWGG 1 cut(s) 404
Esp3I CGTCTC 2 cut(s) 18, 632
FaeI CATG 1 cut(s) 408
FaiI YATR 4 cut(s) 406, 567, 624, 630
FalI AAGNNNNNCTT 2 cut(s) 753, 785
FatI CATG 1 cut(s) 404
Fnu4HI GCNGC 1 cut(s) 198
FriOI GRGCYC 1 cut(s) 746
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 1 cut(s) 17
GlaI GCGC 3 cut(s) 201, 298, 651
GluI GCNGC 1 cut(s) 198
HapII CCGG 2 cut(s) 161, 555
HgaI GACGC 1 cut(s) 649
HhaI GCGC 3 cut(s) 202, 299, 652
Hin1I GRCGYC 1 cut(s) 641
Hin1II CATG 1 cut(s) 408
Hin6I GCGC 3 cut(s) 200, 297, 650
HinP1I GCGC 3 cut(s) 200, 297, 650
HincII GTYRAC 1 cut(s) 386
HindII GTYRAC 1 cut(s) 386
HinfI GANTC 5 cut(s) 157, 166, 569, 754, 773
HpaII CCGG 2 cut(s) 161, 555
HphI GGTGA 2 cut(s) 524, 544
Hpy166II GTNNAC 1 cut(s) 386
Hpy188I TCNGA 6 cut(s) 24, 51, 189, 244, 280, 574
Hpy188III TCNNGA 2 cut(s) 758, 770
Hpy8I GTNNAC 1 cut(s) 386
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 4 cut(s) 117, 172, 258, 285
HpyCH4III ACNGT 4 cut(s) 348, 383, 700, 786
HpyCH4IV ACGT 1 cut(s) 617
HpyCH4V TGCA 6 cut(s) 95, 172, 398, 458, 494, 674
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 296, 649
HpyF3I CTNAG 2 cut(s) 58, 519
HpySE526I ACGT 1 cut(s) 617
Hsp92I GRCGYC 1 cut(s) 641
Hsp92II CATG 1 cut(s) 408
HspAI GCGC 3 cut(s) 200, 297, 650
Kzo9I GATC 5 cut(s) 218, 244, 408, 505, 610
LmnI GCTCC 2 cut(s) 78, 190
LpnPI CCDG 7 cut(s) 174, 272, 285, 300, 357, 531, 568
LweI GCATC 2 cut(s) 104, 467
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 617
MaeIII GTNAC 2 cut(s) 550, 662
MalI GATC 5 cut(s) 220, 246, 410, 507, 612
MboI GATC 5 cut(s) 218, 244, 408, 505, 610
MboII GAAGA 4 cut(s) 28, 515, 598, 763
MfeI CAATTG 1 cut(s) 173
MflI RGATCY 1 cut(s) 505
MhlI GDGCHC 1 cut(s) 746
MluCI AATT 4 cut(s) 173, 337, 376, 603
MlyI GAGTC 2 cut(s) 563, 748
MmeI TCCRAC 3 cut(s) 47, 196, 615
MnlI CCTC 3 cut(s) 67, 199, 240
MroXI GAANNNNTTC 1 cut(s) 765
MseI TTAA 4 cut(s) 69, 264, 467, 476
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 2 cut(s) 161, 555
MunI CAATTG 1 cut(s) 173
MvnI CGCG 2 cut(s) 202, 297
MwoI GCNNNNNNNGC 3 cut(s) 161, 296, 649
NcoI CCATGG 1 cut(s) 404
NdeII GATC 5 cut(s) 218, 244, 408, 505, 610
NlaIII CATG 1 cut(s) 408
NmuCI GTSAC 2 cut(s) 550, 662
PcsI WCGNNNNNNNCGW 1 cut(s) 152
PdmI GAANNNNTTC 1 cut(s) 765
PfeI GAWTC 3 cut(s) 157, 166, 773
PflFI GACNNNGTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 2 cut(s) 563, 748
PpsI GAGTC 2 cut(s) 563, 748
Psp124BI GAGCTC 1 cut(s) 746
PspPI GGNCC 1 cut(s) 542
PsuI RGATCY 1 cut(s) 505
PsyI GACNNNGTC 1 cut(s) 10
RsaI GTAC 2 cut(s) 224, 620
RsaNI GTAC 2 cut(s) 223, 619
SacI GAGCTC 1 cut(s) 746
SaqAI TTAA 4 cut(s) 69, 264, 467, 476
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 5 cut(s) 218, 244, 408, 505, 610
Sau96I GGNCC 1 cut(s) 542
SchI GAGTC 2 cut(s) 563, 748
SduI GDGCHC 1 cut(s) 746
SfaNI GCATC 2 cut(s) 104, 467
SinI GGWCC 1 cut(s) 542
Sse9I AATT 4 cut(s) 173, 337, 376, 603
SsiI CCGC 5 cut(s) 149, 197, 295, 332, 472
SspI AATATT 1 cut(s) 364
SspMI CTAG 1 cut(s) 17
SstI GAGCTC 1 cut(s) 746
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 4 cut(s) 348, 383, 700, 786
TaiI ACGT 1 cut(s) 620
TaqI TCGA 3 cut(s) 65, 411, 597
TasI AATT 4 cut(s) 173, 337, 376, 603
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 3 cut(s) 157, 166, 773
Tru1I TTAA 4 cut(s) 69, 264, 467, 476
Tru9I TTAA 4 cut(s) 69, 264, 467, 476
TseFI GTSAC 2 cut(s) 550, 662
Tsp45I GTSAC 2 cut(s) 550, 662
TspDTI ATGAA 1 cut(s) 591
TspGWI ACGGA 1 cut(s) 228
Tth111I GACNNNGTC 1 cut(s) 10
VpaK11BI GGWCC 1 cut(s) 542
XmnI GAANNNNTTC 1 cut(s) 765
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.