Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012358

Physical Location & Seq

Genomic Coordinates Forward (+)

13294202 .. 13297865

Gene Structure 3664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G213200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTACCGGTCCTCTGCCTCCTCCAATACCCTCATCTCTCATCTCCTCCTCCTCCTCAAACAGCCATTCTACTTCTTCTTCACGTTCAAAACTGCCCCCACTTCTCTCGCCTTCTCCATTGCCTCGTCATAATTATCAGCAGCAGGCACAGAGTAAAAAACGAAGAGAGTTGTTGTTGAAAGGAGGACTTGGTCTGCTTCCTCTTGCTCTGGTTGAGTCAATATTGAAAGAGCCACTTACTGTGCCTTCAGCAGAAGCTAAGGAGGCGGTGGTGGGCTCCTACCTCCCACCCTCACCTTCTGACCCTTCCTTCGTTCTCTTCAAAGCCTCTGCTAAAGACACTCCCGCTCTTCGTGCAGGAAATGTGCAGCCTTACCAGTTCATTATTCCTGCAACCTGGAAACAGATGCGTGTGGCAAACATTTTATCTGGTAATTACTGCCAGCCAAAGTGTGCAGAGCCCTGGGTGGAGGTAAAATTTGAAGACGAAAAACAGGGAAAACTTCAGGTTGTGGCTTCACCTTTGATACGCCTGACAAATAAACCCAATGCAACAATTGAAGATATTGGCAACCCTGAGAAGGTGATTGCTTCTCTTGGCCCTTTTGTTACAGGAAACACATATGATCCAGATGAGCTGCTTGAGACGACAGTTGAAAAGCGCGGCGATCTGACGTACTACAAGTATGCGCTGGAGACCCCGTTTGCTCTTACAGGTTCTCACAATCTTGCAAAGGCAACAGCCAAGGGAAACACTGTTGTATTATTTGTGGTAAGTGCAAGTGACAAGCAATGGCAAGCTTCTCAGAAGACTCTAAAAGCCATGCTTGATTCCTTTCAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0031976 GO:0031977 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

283

Amino Acids

30.55

Weight (kDa)

9.16

Isoelectric Point (pI)

53.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56650
fragaria_vesca	FvH4_1g28660 FvH4_1g28660 FvH4_1g28660
malus_domestica	MD03G1200900.v1.1
prunus_persica	Prupe.4G213200_v2.0.a1
pyrus_communis	pycom03g15240
rosa_chinensis	RchiOBHm_Chr3g0492661 RchiOBHm_Chr3g0492671
rosa_laevigata	RLG00000022751
rosa_multiflora	Rmu_sc0000831.1_g000013
rosa_roxburghii	Rroxscaffold_6G00392150
rosa_rugosa	Rorug03G0255600
rosa_samantha	Rh3AG305700 Rh3AG305800 Rh3BG342100 Rh3CG339500 Rh3DG341400
rosa_wichuraiana	Rw3G026920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	350
AccII	CGCG	1 cut(s)	666
AciI	CCGC	3 cut(s)	269, 348, 666
AclWI	GGATC	1 cut(s)	623
AcsI	RAATTY	1 cut(s)	479
AcuI	CTGAAG	2 cut(s)	234, 491
AfaI	GTAC	1 cut(s)	680
AfiI	CCNNNNNNNGG	1 cut(s)	583
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	8 cut(s)	90, 181, 229, 325, 485, 563, 659, 842
AjnI	CCWGG	2 cut(s)	398, 464
AluBI	AGCT	3 cut(s)	260, 640, 803
AluI	AGCT	3 cut(s)	260, 640, 803
Alw26I	GTCTC	2 cut(s)	641, 692
AlwI	GGATC	1 cut(s)	623
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	3 cut(s)	142, 370, 640
ApoI	RAATTY	1 cut(s)	479
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AsiGI	ACCGGT	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	666, 694
AspS9I	GGNCC	2 cut(s)	11, 602
AsuHPI	GGTGA	3 cut(s)	288, 513, 598
AvaII	GGWCC	1 cut(s)	11
BanII	GRGCYC	2 cut(s)	281, 465
BbsI	GAAGAC	2 cut(s)	492, 818
BbvI	GCAGC	3 cut(s)	154, 382, 627
BciT130I	CCWGG	2 cut(s)	400, 466
BcoDI	GTCTC	2 cut(s)	641, 692
BisI	GCNGC	4 cut(s)	143, 371, 641, 667
BlsI	GCNGC	4 cut(s)	144, 372, 642, 668
Bme1390I	CCNGG	2 cut(s)	400, 466
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	2 cut(s)	11, 602
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	2 cut(s)	400, 466
BmsI	GCATC	1 cut(s)	399
BpiI	GAAGAC	2 cut(s)	492, 818
BpmI	CTGGAG	1 cut(s)	716
Bpu10I	CCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	665
BsaI	GGTCTC	1 cut(s)	692
BsaJI	CCNNGG	3 cut(s)	464, 465, 747
BsaWI	WCCGGW	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	689, 719
Bsc4I	CCNNNNNNNGG	1 cut(s)	583
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	2 cut(s)	119, 800
BseBI	CCWGG	2 cut(s)	400, 466
BseDI	CCNNGG	3 cut(s)	464, 465, 747
BseLI	CCNNNNNNNGG	1 cut(s)	583
BseMI	GCAATG	2 cut(s)	119, 800
BseMII	CTCAG	2 cut(s)	570, 821
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	5 cut(s)	12, 37, 40, 43, 46
BseXI	GCAGC	3 cut(s)	154, 382, 627
BsgI	GTGCAG	3 cut(s)	378, 389, 477
Bsh1236I	CGCG	1 cut(s)	666
BshFI	GGCC	1 cut(s)	603
BshTI	ACCGGT	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	583
BsmAI	GTCTC	2 cut(s)	641, 692
BsmBI	CGTCTC	1 cut(s)	641
BsnI	GGCC	1 cut(s)	603
Bso31I	GGTCTC	1 cut(s)	692
Bsp1286I	GDGCHC	2 cut(s)	281, 465
Bsp143I	GATC	2 cut(s)	628, 670
BspACI	CCGC	3 cut(s)	269, 348, 666
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	2 cut(s)	571, 820
BspFNI	CGCG	1 cut(s)	666
BspLI	GGNNCC	1 cut(s)	280
BspPI	GGATC	1 cut(s)	623
BspQI	GCTCTTC	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	692
BsrBI	CCGCTC	1 cut(s)	350
BsrDI	GCAATG	2 cut(s)	119, 800
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	379
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	3 cut(s)	464, 465, 747
BssMI	GATC	2 cut(s)	628, 670
BssT1I	CCWWGG	1 cut(s)	747
Bst2UI	CCWGG	2 cut(s)	400, 466
Bst4CI	ACNGT	3 cut(s)	244, 655, 760
Bst6I	CTCTTC	3 cut(s)	160, 326, 357
BstC8I	GCNNGC	3 cut(s)	147, 446, 801
BstDEI	CTNAG	3 cut(s)	261, 579, 807
BstFNI	CGCG	1 cut(s)	666
BstHHI	GCGC	2 cut(s)	666, 694
BstKTI	GATC	2 cut(s)	631, 673
BstMAI	GTCTC	2 cut(s)	641, 692
BstMBI	GATC	2 cut(s)	628, 670
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 356
BstNI	CCWGG	2 cut(s)	400, 466
BstSCI	CCNGG	2 cut(s)	398, 464
BstUI	CGCG	1 cut(s)	666
BstV1I	GCAGC	3 cut(s)	154, 382, 627
BstV2I	GAAGAC	2 cut(s)	492, 818
BsuRI	GGCC	1 cut(s)	603
BtsIMutI	CAGTG	1 cut(s)	756
Cac8I	GCNNGC	3 cut(s)	147, 446, 801
CfoI	GCGC	2 cut(s)	666, 694
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	11, 602
Csp6I	GTAC	1 cut(s)	679
CspAI	ACCGGT	1 cut(s)	8
CviAII	CATG	1 cut(s)	826
CviQI	GTAC	1 cut(s)	679
DdeI	CTNAG	3 cut(s)	261, 579, 807
DpnI	GATC	2 cut(s)	630, 672
DpnII	GATC	2 cut(s)	628, 670
Eam1104I	CTCTTC	3 cut(s)	160, 326, 357
EarI	CTCTTC	3 cut(s)	160, 326, 357
Eco130I	CCWWGG	1 cut(s)	747
Eco24I	GRGCYC	2 cut(s)	281, 465
Eco31I	GGTCTC	1 cut(s)	692
Eco47I	GGWCC	1 cut(s)	11
Eco57I	CTGAAG	2 cut(s)	234, 491
EcoRII	CCWGG	2 cut(s)	398, 464
EcoT14I	CCWWGG	1 cut(s)	747
EcoT38I	GRGCYC	2 cut(s)	281, 465
ErhI	CCWWGG	1 cut(s)	747
Esp3I	CGTCTC	1 cut(s)	641
FaeI	CATG	1 cut(s)	829
FaiI	YATR	5 cut(s)	132, 625, 627, 690, 827
FalI	AAGNNNNNCTT	6 cut(s)	174, 206, 222, 254, 813, 845
FatI	CATG	1 cut(s)	825
FauI	CCCGC	1 cut(s)	355
FauNDI	CATATG	1 cut(s)	625
Fnu4HI	GCNGC	4 cut(s)	143, 371, 641, 667
FriOI	GRGCYC	2 cut(s)	281, 465
Fsp4HI	GCNGC	4 cut(s)	143, 371, 641, 667
GlaI	GCGC	2 cut(s)	665, 693
GluI	GCNGC	4 cut(s)	143, 371, 641, 667
GsuI	CTGGAG	1 cut(s)	716
HaeIII	GGCC	1 cut(s)	603
HapII	CCGG	1 cut(s)	9
HhaI	GCGC	2 cut(s)	666, 694
Hin1II	CATG	1 cut(s)	829
Hin6I	GCGC	2 cut(s)	664, 692
HinP1I	GCGC	2 cut(s)	664, 692
HindIII	AAGCTT	1 cut(s)	801
HinfI	GANTC	3 cut(s)	218, 814, 833
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	3 cut(s)	288, 513, 598
Hpy188I	TCNGA	3 cut(s)	304, 675, 810
Hpy188III	TCNNGA	1 cut(s)	632
HpyAV	CCTTC	6 cut(s)	123, 258, 309, 318, 322, 577
HpyCH4III	ACNGT	3 cut(s)	244, 655, 760
HpyCH4IV	ACGT	2 cut(s)	85, 677
HpyCH4V	TGCA	7 cut(s)	359, 370, 395, 458, 554, 734, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 356
HpyF3I	CTNAG	3 cut(s)	261, 579, 807
HpySE526I	ACGT	2 cut(s)	85, 677
Hsp92II	CATG	1 cut(s)	829
HspAI	GCGC	2 cut(s)	664, 692
Kzo9I	GATC	2 cut(s)	628, 670
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	284
Lsp1109I	GCAGC	3 cut(s)	154, 382, 627
LweI	GCATC	1 cut(s)	399
MaeII	ACGT	2 cut(s)	85, 677
MaeIII	GTNAC	2 cut(s)	610, 785
MalI	GATC	2 cut(s)	630, 672
MbiI	CCGCTC	1 cut(s)	350
MboI	GATC	2 cut(s)	628, 670
MboII	GAAGA	8 cut(s)	69, 72, 177, 313, 344, 497, 575, 823
MfeI	CAATTG	1 cut(s)	558
MhlI	GDGCHC	2 cut(s)	281, 465
MluCI	AATT	4 cut(s)	133, 436, 479, 558
MlyI	GAGTC	2 cut(s)	227, 808
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	2 cut(s)	400, 466
MunI	CAATTG	1 cut(s)	558
MvaI	CCWGG	2 cut(s)	400, 466
MvnI	CGCG	1 cut(s)	666
MwoI	GCNNNNNNNGC	2 cut(s)	266, 356
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	2 cut(s)	628, 670
NlaIII	CATG	1 cut(s)	829
NlaIV	GGNNCC	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	785
PasI	CCCWGGG	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	833
PflFI	GACNNNGTC	1 cut(s)	192
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	144, 372, 642, 668
PleI	GAGTC	2 cut(s)	226, 808
PpsI	GAGTC	2 cut(s)	226, 808
Psp6I	CCWGG	2 cut(s)	398, 464
PspGI	CCWGG	2 cut(s)	398, 464
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	2 cut(s)	11, 602
PsyI	GACNNNGTC	1 cut(s)	192
RsaI	GTAC	1 cut(s)	680
RsaNI	GTAC	1 cut(s)	679
SapI	GCTCTTC	1 cut(s)	357
SatI	GCNGC	4 cut(s)	143, 371, 641, 667
Sau3AI	GATC	2 cut(s)	628, 670
Sau96I	GGNCC	2 cut(s)	11, 602
SchI	GAGTC	2 cut(s)	227, 808
ScrFI	CCNGG	2 cut(s)	400, 466
SduI	GDGCHC	2 cut(s)	281, 465
SfaNI	GCATC	1 cut(s)	399
SinI	GGWCC	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	4 cut(s)	133, 436, 479, 558
SsiI	CCGC	3 cut(s)	269, 348, 666
SspI	AATATT	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	398, 464
StyI	CCWWGG	1 cut(s)	747
TaaI	ACNGT	3 cut(s)	244, 655, 760
TaiI	ACGT	2 cut(s)	88, 680
TasI	AATT	4 cut(s)	133, 436, 479, 558
TauI	GCSGC	1 cut(s)	669
TfiI	GAWTC	1 cut(s)	833
TscAI	CASTG	1 cut(s)	763
TseFI	GTSAC	1 cut(s)	785
TseI	GCWGC	3 cut(s)	142, 370, 640
Tsp45I	GTSAC	1 cut(s)	785
TspDTI	ATGAA	1 cut(s)	373
TspRI	CASTG	1 cut(s)	763
Tth111I	GACNNNGTC	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.