Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0012358

Physical Location & Seq

Genomic Coordinates Forward (+)

36738643 .. 36741029

Gene Structure 2387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG342100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCGACCAGTGCTCCTCAGAGACCTCCGATCATGATCCCCAATTCAAAATACAAGTTGTGTTCGGGTCAGTGTAGTTCAAAACAGCATTGTCTTCCCACATTAGGAGCCCCTCAGGAGAAGAGTATGATGGTGAAGAGAAGAGAGTTGATGTTGGGTTTGAGTATGGTTCCAACCATTGCAATCGAGGCGCTGCCTTCAGAAGCCAGGGAGGTCGTTGTGGGCTCCTATCTCCCACCCTCAACTTCCGACCCTTCATTCGTTCTCTTCCAAGCCTCTGCTAAAGACACTCCCGCTCTTCGCGCAGGAAACGTGCAGCCTTACCAGTTCATCCTTCCCCCTACATGGAAACAGACACGTGTAGCAAACATATTATCTGGTAATTACTGCCAGCCAAAATGTGCAGAGCCATGGGTGGAGGTGAAATTTGAAGATGAAAAACAAGGAAAGCTTCAGGTTGTGGCTTCACCTTTGATACGCCTGACCAATAAGCCAAACGCATCTATTGAAGATATTGGCAACCCTGAGAAGCTGATTGCTTCTCTTGGACCTTTTGTAACTGGGAATACCTATGATCCTGATGAGCTCCTTGAGACCAAAGTTGAAAAACGTGGCGATCTCACGGTATGTATCAGTGCCCGCTGTGTTACAAGTTGCTTTGTTGCTTCATCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0031976 GO:0031977 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

225

Amino Acids

24.52

Weight (kDa)

8.39

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56650
fragaria_vesca	FvH4_1g28660 FvH4_1g28660 FvH4_1g28660
malus_domestica	MD03G1200900.v1.1
prunus_persica	Prupe.4G213200_v2.0.a1
pyrus_communis	pycom03g15240
rosa_chinensis	RchiOBHm_Chr3g0492661 RchiOBHm_Chr3g0492671
rosa_laevigata	RLG00000022751
rosa_multiflora	Rmu_sc0000831.1_g000013
rosa_roxburghii	Rroxscaffold_6G00392150
rosa_rugosa	Rorug03G0255600
rosa_samantha	Rh3AG305700 Rh3AG305800 Rh3BG342100 Rh3CG339500 Rh3DG341400
rosa_wichuraiana	Rw3G026920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	296
AccII	CGCG	1 cut(s)	303
AciI	CCGC	2 cut(s)	294, 640
AclWI	GGATC	2 cut(s)	31, 569
AcsI	RAATTY	1 cut(s)	425
AcuI	CTGAAG	2 cut(s)	183, 437
AcvI	CACGTG	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	104, 345
AflIII	ACRYGT	2 cut(s)	356, 358
AgsI	TTSAA	5 cut(s)	48, 81, 431, 509, 605
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	3 cut(s)	451, 532, 586
AluI	AGCT	3 cut(s)	451, 532, 586
Alw21I	GWGCWC	2 cut(s)	16, 588
Alw26I	GTCTC	2 cut(s)	16, 587
AlwI	GGATC	2 cut(s)	31, 569
ApeKI	GCWGC	2 cut(s)	193, 316
ApoI	RAATTY	1 cut(s)	425
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AspLEI	GCGC	2 cut(s)	193, 305
AspS9I	GGNCC	1 cut(s)	548
AsuHPI	GGTGA	3 cut(s)	145, 433, 459
AvaII	GGWCC	1 cut(s)	548
AxyI	CCTNAGG	1 cut(s)	114
BaeGI	GKGCMC	1 cut(s)	640
BanII	GRGCYC	3 cut(s)	112, 227, 588
BbrPI	CACGTG	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	86
Bbv12I	GWGCWC	2 cut(s)	16, 588
BbvI	GCAGC	2 cut(s)	180, 328
BccI	CCATC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	208
BcoDI	GTCTC	2 cut(s)	16, 587
BfoI	RGCGCY	1 cut(s)	194
BisI	GCNGC	2 cut(s)	194, 317
BlsI	GCNGC	2 cut(s)	195, 318
Bme1390I	CCNGG	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	548
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	3 cut(s)	109, 171, 226
BmrFI	CCNGG	1 cut(s)	208
BmrI	ACTGGG	1 cut(s)	570
BmsI	GCATC	1 cut(s)	509
BmuI	ACTGGG	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	611
BsaAI	YACGTR	1 cut(s)	359
BsaBI	GATNNNNATC	1 cut(s)	35
BsaI	GGTCTC	2 cut(s)	16, 587
BsaJI	CCNNGG	2 cut(s)	207, 410
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 345
Bse1I	ACTGG	3 cut(s)	9, 325, 565
Bse21I	CCTNAGG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	2 cut(s)	207, 410
BseGI	GGATG	1 cut(s)	330
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	2 cut(s)	104, 345
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	3 cut(s)	32, 128, 516
BseNI	ACTGG	3 cut(s)	9, 325, 565
BseRI	GAGGAG	1 cut(s)	6
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	2 cut(s)	180, 328
BsgI	GTGCAG	2 cut(s)	335, 423
Bsh1236I	CGCG	1 cut(s)	303
BsiHKAI	GWGCWC	2 cut(s)	16, 588
BslI	CCNNNNNNNGG	2 cut(s)	104, 345
BsmAI	GTCTC	2 cut(s)	16, 587
Bso31I	GGTCTC	2 cut(s)	16, 587
Bsp1286I	GDGCHC	5 cut(s)	16, 112, 227, 588, 640
Bsp143I	GATC	4 cut(s)	30, 36, 574, 616
Bsp19I	CCATGG	1 cut(s)	410
BspACI	CCGC	2 cut(s)	294, 640
BspCNI	CTCAG	3 cut(s)	31, 127, 517
BspFNI	CGCG	1 cut(s)	303
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	3 cut(s)	109, 171, 226
BspPI	GGATC	2 cut(s)	31, 569
BspQI	GCTCTTC	1 cut(s)	303
BspTNI	GGTCTC	2 cut(s)	16, 587
BsrBI	CCGCTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	3 cut(s)	9, 325, 565
BssECI	CCNNGG	2 cut(s)	207, 410
BssMI	GATC	4 cut(s)	30, 36, 574, 616
BssT1I	CCWWGG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	5 cut(s)	116, 131, 136, 272, 303
BstBAI	YACGTR	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	392, 640
BstDEI	CTNAG	3 cut(s)	18, 114, 525
BstDSI	CCRYGG	1 cut(s)	410
BstF5I	GGATG	1 cut(s)	330
BstFNI	CGCG	1 cut(s)	303
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	2 cut(s)	193, 305
BstKTI	GATC	4 cut(s)	33, 39, 577, 619
BstMAI	GTCTC	2 cut(s)	16, 587
BstMBI	GATC	4 cut(s)	30, 36, 574, 616
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 188, 302
BstNI	CCWGG	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	206
BstSLI	GKGCMC	1 cut(s)	640
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	180, 328
BstV2I	GAAGAC	1 cut(s)	86
Bsu36I	CCTNAGG	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	410
BtsCI	GGATG	1 cut(s)	330
BtsIMutI	CAGTG	3 cut(s)	16, 77, 640
Cac8I	GCNNGC	2 cut(s)	392, 640
CciI	TCATGA	1 cut(s)	33
CfoI	GCGC	2 cut(s)	193, 305
Cfr13I	GGNCC	1 cut(s)	548
CviAII	CATG	3 cut(s)	34, 345, 411
DdeI	CTNAG	3 cut(s)	18, 114, 525
DpnI	GATC	4 cut(s)	32, 38, 576, 618
DpnII	GATC	4 cut(s)	30, 36, 574, 616
Eam1104I	CTCTTC	5 cut(s)	116, 131, 136, 272, 303
EarI	CTCTTC	5 cut(s)	116, 131, 136, 272, 303
Ecl136II	GAGCTC	1 cut(s)	586
Eco130I	CCWWGG	1 cut(s)	410
Eco24I	GRGCYC	3 cut(s)	112, 227, 588
Eco31I	GGTCTC	2 cut(s)	16, 587
Eco47I	GGWCC	1 cut(s)	548
Eco53kI	GAGCTC	1 cut(s)	586
Eco57I	CTGAAG	2 cut(s)	183, 437
Eco72I	CACGTG	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	586
EcoRII	CCWGG	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	410
EcoT38I	GRGCYC	3 cut(s)	112, 227, 588
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	3 cut(s)	37, 348, 414
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FatI	CATG	3 cut(s)	33, 344, 410
FauI	CCCGC	2 cut(s)	301, 647
Fnu4HI	GCNGC	2 cut(s)	194, 317
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	3 cut(s)	112, 227, 588
Fsp4HI	GCNGC	2 cut(s)	194, 317
GlaI	GCGC	2 cut(s)	192, 304
GluI	GCNGC	2 cut(s)	194, 317
HaeII	RGCGCY	1 cut(s)	194
HhaI	GCGC	2 cut(s)	193, 305
Hin1II	CATG	3 cut(s)	37, 348, 414
Hin6I	GCGC	2 cut(s)	191, 303
HinP1I	GCGC	2 cut(s)	191, 303
HindIII	AAGCTT	1 cut(s)	449
HphI	GGTGA	3 cut(s)	145, 433, 459
Hpy188I	TCNGA	4 cut(s)	21, 30, 202, 250
Hpy188III	TCNNGA	3 cut(s)	34, 116, 578
HpyAV	CCTTC	3 cut(s)	207, 264, 344
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	3 cut(s)	312, 358, 610
HpyCH4V	TGCA	3 cut(s)	182, 316, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 188, 302
HpyF3I	CTNAG	3 cut(s)	18, 114, 525
HpySE526I	ACGT	3 cut(s)	312, 358, 610
Hsp92II	CATG	3 cut(s)	37, 348, 414
HspAI	GCGC	2 cut(s)	191, 303
Kzo9I	GATC	4 cut(s)	30, 36, 574, 616
LguI	GCTCTTC	1 cut(s)	303
LmnI	GCTCC	4 cut(s)	19, 107, 230, 591
Lsp1109I	GCAGC	2 cut(s)	180, 328
LweI	GCATC	1 cut(s)	509
MaeII	ACGT	3 cut(s)	312, 358, 610
MaeIII	GTNAC	2 cut(s)	556, 646
MalI	GATC	4 cut(s)	32, 38, 576, 618
MbiI	CCGCTC	1 cut(s)	296
MboI	GATC	4 cut(s)	30, 36, 574, 616
MboII	GAAGA	8 cut(s)	86, 133, 148, 153, 259, 290, 443, 521
MhlI	GDGCHC	5 cut(s)	16, 112, 227, 588, 640
MluCI	AATT	3 cut(s)	43, 382, 425
MmeI	TCCRAC	2 cut(s)	197, 273
MnlI	CCTC	8 cut(s)	27, 36, 123, 181, 205, 250, 286, 412
MspA1I	CMGCKG	1 cut(s)	642
MspR9I	CCNGG	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	3 cut(s)	11, 188, 302
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	4 cut(s)	30, 36, 574, 616
NlaIII	CATG	3 cut(s)	37, 348, 414
NlaIV	GGNNCC	3 cut(s)	109, 171, 226
PagI	TCATGA	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	303
PkrI	GCNGC	2 cut(s)	195, 318
PmaCI	CACGTG	1 cut(s)	359
PmlI	CACGTG	1 cut(s)	359
Ppu21I	YACGTR	1 cut(s)	359
Psp124BI	GAGCTC	1 cut(s)	588
Psp6I	CCWGG	1 cut(s)	206
PspCI	CACGTG	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	3 cut(s)	109, 171, 226
PspPI	GGNCC	1 cut(s)	548
SacI	GAGCTC	1 cut(s)	588
SapI	GCTCTTC	1 cut(s)	303
SatI	GCNGC	2 cut(s)	194, 317
Sau3AI	GATC	4 cut(s)	30, 36, 574, 616
Sau96I	GGNCC	1 cut(s)	548
ScrFI	CCNGG	1 cut(s)	208
SduI	GDGCHC	5 cut(s)	16, 112, 227, 588, 640
SfaNI	GCATC	1 cut(s)	509
SinI	GGWCC	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	3 cut(s)	43, 382, 425
SsiI	CCGC	2 cut(s)	294, 640
SstI	GAGCTC	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	206
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	3 cut(s)	315, 361, 613
TaqI	TCGA	1 cut(s)	186
TasI	AATT	3 cut(s)	43, 382, 425
TscAI	CASTG	3 cut(s)	16, 77, 640
TseI	GCWGC	2 cut(s)	193, 316
TspDTI	ATGAA	4 cut(s)	246, 319, 450, 657
TspRI	CASTG	3 cut(s)	16, 77, 640
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.