RchiOBHm_Chr3g0492671

psbP domain-containing protein 6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0012358
Physical Location & Seq
Forward (+)
39587678 .. 39588376
699 bp
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UTR
Exon/CDS
Intron
PRQ45555

Sequence Viewer

Length: 459 bp
ATGCCTTACCAGTTCATCCTTCCCCCGACATGGAAACAGACACGCGTAGCAAACATATTATCTGGTAATTACTGCCAGCCAAAATGTGTAGAGCCATGGGTGGAGGTGAAATTTGAAGATGAAAAACAAGGAAAGCTTCAGGTTGTGGCTTCACCTTTGATACGCCTGACCAATAAGCCAAATGCATCTATTGAAGATATTGGCAACCCTGAGAAGCTGATTGCTTCTCTTGGACCTTTTGTAACTGGGAACACCTATGATCCTGATGAGCTCCTTGAGACCAAAGTTGAAAAACGTGGCGATCTCACGACTCCATTTGCACTGACAGGTTCCCACAATCTTGCAAAGGCCACAGCTAAGGGGAACACTGTTGTCTTATTTGTGGTTAGCGCAAATGACAAGCAGTGGCAATCATCTCAGAAGATTCTAAAGGCCATACTTGATTCTTTTCAGGTGTAG

Protein Analysis

152

Amino Acids

16.86

Weight (kDa)

7.71

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 3 - 152 8.4e-06 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56650
fragaria_vesca FvH4_1g28660 FvH4_1g28660 FvH4_1g28660
malus_domestica MD03G1200900.v1.1
prunus_persica Prupe.4G213200_v2.0.a1
pyrus_communis pycom03g15240
rosa_chinensis RchiOBHm_Chr3g0492661 RchiOBHm_Chr3g0492671
rosa_laevigata RLG00000022751
rosa_multiflora Rmu_sc0000831.1_g000013
rosa_roxburghii Rroxscaffold_6G00392150
rosa_rugosa Rorug03G0255600
rosa_samantha Rh3AG305700 Rh3AG305800 Rh3BG342100 Rh3CG339500 Rh3DG341400
rosa_wichuraiana Rw3G026920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 45
AclWI GGATC 1 cut(s) 254
AcsI RAATTY 1 cut(s) 110
AcuI CTGAAG 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 30
AflIII ACRYGT 1 cut(s) 43
AgsI TTSAA 3 cut(s) 116, 194, 290
AluBI AGCT 4 cut(s) 136, 217, 271, 356
AluI AGCT 4 cut(s) 136, 217, 271, 356
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 1 cut(s) 254
AoxI GGCC 2 cut(s) 348, 432
ApoI RAATTY 1 cut(s) 110
AspLEI GCGC 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 118, 144
AvaII GGWCC 1 cut(s) 233
BanII GRGCYC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 272
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 331
BmrI ACTGGG 1 cut(s) 255
BmsI GCATC 1 cut(s) 194
BmuI ACTGGG 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 296
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 10, 250
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 30
BseMII CTCAG 2 cut(s) 201, 431
BseNI ACTGG 2 cut(s) 10, 250
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 2 cut(s) 350, 434
BsiHKAI GWGCWC 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 272
BsnI GGCC 2 cut(s) 350, 434
Bso31I GGTCTC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 2 cut(s) 259, 301
Bsp19I CCATGG 1 cut(s) 95
BspANI GGCC 2 cut(s) 350, 434
BspCNI CTCAG 2 cut(s) 202, 430
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 331
BspPI GGATC 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 272
BsrI ACTGG 2 cut(s) 10, 250
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 2 cut(s) 259, 301
BssT1I CCWWGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 370
BstC8I GCNNGC 1 cut(s) 77
BstDEI CTNAG 3 cut(s) 210, 357, 417
BstDSI CCRYGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 15
BstFNI CGCG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 392
BstKTI GATC 2 cut(s) 262, 304
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 2 cut(s) 259, 301
BstUI CGCG 1 cut(s) 45
BsuRI GGCC 2 cut(s) 350, 434
BtgI CCRYGG 1 cut(s) 95
BtsCI GGATG 1 cut(s) 15
BtsI GCAGTG 1 cut(s) 410
BtsIMutI CAGTG 3 cut(s) 320, 366, 410
Cac8I GCNNGC 1 cut(s) 77
CfoI GCGC 1 cut(s) 392
Cfr13I GGNCC 1 cut(s) 233
CviAII CATG 2 cut(s) 30, 96
DdeI CTNAG 3 cut(s) 210, 357, 417
DpnI GATC 2 cut(s) 261, 303
DpnII GATC 2 cut(s) 259, 301
Ecl136II GAGCTC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 273
Eco31I GGTCTC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 233
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 95
EcoT22I ATGCAT 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 95
FaeI CATG 2 cut(s) 33, 99
FaiI YATR 5 cut(s) 31, 56, 97, 258, 437
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FatI CATG 2 cut(s) 29, 95
FokI GGATG 1 cut(s) 2
FriOI GRGCYC 1 cut(s) 273
GlaI GCGC 1 cut(s) 391
HaeIII GGCC 2 cut(s) 350, 434
HhaI GCGC 1 cut(s) 392
Hin1II CATG 2 cut(s) 33, 99
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 3 cut(s) 310, 424, 443
HphI GGTGA 2 cut(s) 118, 144
Hpy188I TCNGA 1 cut(s) 420
Hpy188III TCNNGA 2 cut(s) 263, 307
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 3 cut(s) 185, 320, 344
HpyF3I CTNAG 3 cut(s) 210, 357, 417
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 2 cut(s) 33, 99
HspAI GCGC 1 cut(s) 390
Kzo9I GATC 2 cut(s) 259, 301
LmnI GCTCC 1 cut(s) 276
LweI GCATC 1 cut(s) 194
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 261, 303
MboI GATC 2 cut(s) 259, 301
MboII GAAGA 3 cut(s) 128, 206, 433
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 2 cut(s) 67, 110
MluI ACGCGT 1 cut(s) 43
MlyI GAGTC 1 cut(s) 304
MnlI CCTC 1 cut(s) 97
Mph1103I ATGCAT 1 cut(s) 187
MvnI CGCG 1 cut(s) 45
NcoI CCATGG 1 cut(s) 95
NdeII GATC 2 cut(s) 259, 301
NlaIII CATG 2 cut(s) 33, 99
NlaIV GGNNCC 1 cut(s) 331
NsiI ATGCAT 1 cut(s) 187
PfeI GAWTC 2 cut(s) 424, 443
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
Psp124BI GAGCTC 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 331
PspPI GGNCC 1 cut(s) 233
SacI GAGCTC 1 cut(s) 273
Sau3AI GATC 2 cut(s) 259, 301
Sau96I GGNCC 1 cut(s) 233
SchI GAGTC 1 cut(s) 304
SduI GDGCHC 1 cut(s) 273
SfaNI GCATC 1 cut(s) 194
SinI GGWCC 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 2 cut(s) 67, 110
SstI GAGCTC 1 cut(s) 273
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 370
TaiI ACGT 1 cut(s) 298
TasI AATT 2 cut(s) 67, 110
TfiI GAWTC 2 cut(s) 424, 443
TscAI CASTG 3 cut(s) 327, 373, 410
TspDTI ATGAA 2 cut(s) 4, 135
TspRI CASTG 3 cut(s) 327, 373, 410
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 1 cut(s) 110
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.