Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012358

Physical Location & Seq

Genomic Coordinates Forward (+)

24315818 .. 24318016

Gene Structure 2199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0255600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAGTCAAACTACCAAAAAAAACCTATGTTCATTGAAGATCCAGTTGACGTTTATTTGAATTCTCTTCCGCCCGGTTATCGATTTGCCCCTACCGATGCAGAGCTGATTCTATATTACTTGCAGAAAAAGATTTTGAAGCAGGAACTACCCCTTAACAAGATTCGTGAAATCGATCTTTATCAATACGATCCTCAGTACCTTGCTGAGACGCAGTTGAACAGACATGGAGAAAGAGAATGGTACTTTTTCACTCCCAGGGAGCGAAAGTACCCCCATGGTTCACGGCCAAATCGAACAGCACACGATGGATTCTGGAAGGTAACTGGAAAAGATGAAGTCATTAGATCAGCTACAGGTGAAATAATTGGATACAAAAATACTCTTGATTACTTTGAAGGGACACATTCAGAAAACCAAAAGACCAAATGGAAAATGCATGAATATAGACTAAAAAAATCAGAGAGAGATGAAGATATTGCTGCTTCAAATAATGAAAAATGTCAACGTGATATGAAGTTGGATGATTGTGTTTTGTGTAAGATTTACACAAGTAACAGATGCAAGGCCGGGAAAAGCACCAAGAAAATTAGCAACAGTGCAAAGAAATCATTCAATTCTGTCCAAGATAGAGATGTTCAGCATGAAAATCAGGATCAACCAACTTTTGGTGGTGATTACAATTCCAATTCTCCCGCTGCATTTAACAATGGTTATGGTTCGACGAACAAATTTTGTGACCCTGCAAATCTTCCTCTGCAAGGTCAAGCTTGTGGCGTCGCCCATCCTTCAGGACCCATCAATAACTTCAATAATCAAAACAATACAAATTACAACATGCACTCAAGTTCTTTGGAAGATCATGTCAGAGATTTTGAGCGTTGGTTAATTACAGCCACGAAGAAGCCAAAAAGTGATCATGTACCTGATGGAATACAGTCTTCTAACATGCCAGATGATACTCTAGGTGACAAAGTTCATCACGATCAATCCAAGAAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0031976 GO:0031977 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

334

Amino Acids

38.56

Weight (kDa)

7.64

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	24 - 151	1.9e-40	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56650
fragaria_vesca	FvH4_1g28660 FvH4_1g28660 FvH4_1g28660
malus_domestica	MD03G1200900.v1.1
prunus_persica	Prupe.4G213200_v2.0.a1
pyrus_communis	pycom03g15240
rosa_chinensis	RchiOBHm_Chr3g0492661 RchiOBHm_Chr3g0492671
rosa_laevigata	RLG00000022751
rosa_multiflora	Rmu_sc0000831.1_g000013
rosa_roxburghii	Rroxscaffold_6G00392150
rosa_rugosa	Rorug03G0255600
rosa_samantha	Rh3AG305700 Rh3AG305800 Rh3BG342100 Rh3CG339500 Rh3DG341400
rosa_wichuraiana	Rw3G026920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	668
AciI	CCGC	2 cut(s)	71, 696
AclWI	GGATC	3 cut(s)	35, 185, 663
AcoI	YGGCCR	1 cut(s)	287
AcsI	RAATTY	2 cut(s)	61, 731
AcuI	CTGAAG	1 cut(s)	774
AcyI	GRCGYC	1 cut(s)	777
AfaI	GTAC	4 cut(s)	200, 245, 272, 924
AfiI	CCNNNNNNNGG	2 cut(s)	668, 761
AgsI	TTSAA	8 cut(s)	38, 61, 139, 220, 398, 489, 616, 811
AjnI	CCWGG	1 cut(s)	257
AluBI	AGCT	3 cut(s)	106, 353, 770
AluI	AGCT	3 cut(s)	106, 353, 770
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	3 cut(s)	35, 185, 663
AoxI	GGCC	2 cut(s)	287, 567
ApeKI	GCWGC	2 cut(s)	482, 698
ApoI	RAATTY	2 cut(s)	61, 731
Asp700I	GAANNNNTTC	1 cut(s)	611
AspS9I	GGNCC	1 cut(s)	794
AsuC2I	CCSGG	2 cut(s)	75, 571
AsuHPI	GGTGA	3 cut(s)	371, 686, 980
AvaII	GGWCC	1 cut(s)	794
BbsI	GAAGAC	1 cut(s)	933
BbvI	GCAGC	2 cut(s)	469, 685
BccI	CCATC	4 cut(s)	302, 792, 806, 923
BceAI	ACGGC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	259
BciVI	GTATCC	1 cut(s)	365
BclI	TGATCA	1 cut(s)	916
BcnI	CCSGG	2 cut(s)	75, 571
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	965
BfmI	CTRYAG	1 cut(s)	354
BfuI	GTATCC	1 cut(s)	365
BisI	GCNGC	2 cut(s)	483, 699
BlsI	GCNGC	2 cut(s)	484, 700
Bme1390I	CCNGG	3 cut(s)	75, 259, 571
Bme18I	GGWCC	1 cut(s)	794
BmgT120I	GGNCC	1 cut(s)	794
BmiI	GGNNCC	1 cut(s)	796
BmrFI	CCNGG	3 cut(s)	75, 259, 571
BmsI	GCATC	2 cut(s)	88, 551
BpiI	GAAGAC	1 cut(s)	933
BpuEI	CTTGAG	1 cut(s)	829
BpuMI	CCSGG	2 cut(s)	75, 571
Bsa29I	ATCGAT	2 cut(s)	82, 174
BsaBI	GATNNNNATC	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	777
BsaJI	CCNNGG	3 cut(s)	257, 258, 277
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	668, 761
Bse1I	ACTGG	2 cut(s)	44, 331
Bse8I	GATNNNNATC	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	259
BseCI	ATCGAT	2 cut(s)	82, 174
BseDI	CCNNGG	3 cut(s)	257, 258, 277
BseGI	GGATG	2 cut(s)	529, 784
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	668, 761
BseMII	CTCAG	2 cut(s)	198, 209
BseNI	ACTGG	2 cut(s)	44, 331
BseXI	GCAGC	2 cut(s)	469, 685
BshFI	GGCC	2 cut(s)	289, 569
BshVI	ATCGAT	2 cut(s)	82, 174
BsiSI	CCGG	2 cut(s)	75, 570
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	668, 761
BsmAI	GTCTC	1 cut(s)	203
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	2 cut(s)	289, 569
Bsp143I	GATC	8 cut(s)	40, 175, 190, 347, 655, 859, 916, 985
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	2 cut(s)	71, 696
BspANI	GGCC	2 cut(s)	289, 569
BspCNI	CTCAG	2 cut(s)	199, 208
BspDI	ATCGAT	2 cut(s)	82, 174
BspLI	GGNNCC	1 cut(s)	796
BspPI	GGATC	3 cut(s)	35, 185, 663
BsrI	ACTGG	2 cut(s)	44, 331
BssECI	CCNNGG	3 cut(s)	257, 258, 277
BssMI	GATC	8 cut(s)	40, 175, 190, 347, 655, 859, 916, 985
BssNI	GRCGYC	1 cut(s)	777
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	259
Bst4CI	ACNGT	2 cut(s)	599, 939
Bst6I	CTCTTC	1 cut(s)	72
BstACI	GRCGYC	1 cut(s)	777
BstDEI	CTNAG	2 cut(s)	195, 207
BstDSI	CCRYGG	1 cut(s)	277
BstENI	CCTNNNNNAGG	1 cut(s)	759
BstF5I	GGATG	2 cut(s)	529, 784
BstKTI	GATC	8 cut(s)	43, 178, 193, 350, 658, 862, 919, 988
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	8 cut(s)	40, 175, 190, 347, 655, 859, 916, 985
BstNI	CCWGG	1 cut(s)	259
BstNSI	RCATGY	2 cut(s)	841, 952
BstSCI	CCNGG	3 cut(s)	73, 257, 569
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	469, 685
BstV2I	GAAGAC	1 cut(s)	933
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
Bsu15I	ATCGAT	2 cut(s)	82, 174
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	289, 569
BsuTUI	ATCGAT	2 cut(s)	82, 174
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	529, 784
BtsIMutI	CAGTG	1 cut(s)	604
Cfr13I	GGNCC	1 cut(s)	794
ClaI	ATCGAT	2 cut(s)	82, 174
CseI	GACGC	2 cut(s)	220, 766
Csp6I	GTAC	4 cut(s)	199, 244, 271, 923
CviAII	CATG	8 cut(s)	227, 278, 440, 644, 838, 863, 920, 949
CviJI	RGCY	7 cut(s)	106, 289, 353, 569, 770, 896, 907
CviKI_1	RGCY	7 cut(s)	106, 289, 353, 569, 770, 896, 907
CviQI	GTAC	4 cut(s)	199, 244, 271, 923
DdeI	CTNAG	2 cut(s)	195, 207
DpnI	GATC	8 cut(s)	42, 177, 192, 349, 657, 861, 918, 987
DpnII	GATC	8 cut(s)	40, 175, 190, 347, 655, 859, 916, 985
EaeI	YGGCCR	1 cut(s)	287
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
EciI	GGCGGA	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	794
Eco57I	CTGAAG	1 cut(s)	774
EcoNI	CCTNNNNNAGG	1 cut(s)	759
EcoO109I	RGGNCCY	1 cut(s)	794
EcoRI	GAATTC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	277
EcoT22I	ATGCAT	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	277
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	8 cut(s)	230, 281, 443, 647, 841, 866, 923, 952
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	8 cut(s)	226, 277, 439, 643, 837, 862, 919, 948
FauI	CCCGC	1 cut(s)	703
FbaI	TGATCA	1 cut(s)	916
Fnu4HI	GCNGC	2 cut(s)	483, 699
FokI	GGATG	2 cut(s)	536, 771
Fsp4HI	GCNGC	2 cut(s)	483, 699
FspBI	CTAG	1 cut(s)	965
GluI	GCNGC	2 cut(s)	483, 699
HaeIII	GGCC	2 cut(s)	289, 569
HapII	CCGG	2 cut(s)	75, 570
HgaI	GACGC	2 cut(s)	220, 766
Hin1I	GRCGYC	1 cut(s)	777
Hin1II	CATG	8 cut(s)	230, 281, 443, 647, 841, 866, 923, 952
HincII	GTYRAC	2 cut(s)	49, 506
HindII	GTYRAC	2 cut(s)	49, 506
HindIII	AAGCTT	1 cut(s)	768
HinfI	GANTC	4 cut(s)	5, 109, 163, 312
HpaII	CCGG	2 cut(s)	75, 570
HphI	GGTGA	3 cut(s)	371, 686, 980
Hpy166II	GTNNAC	3 cut(s)	49, 284, 506
Hpy188I	TCNGA	3 cut(s)	412, 463, 869
Hpy188III	TCNNGA	6 cut(s)	167, 316, 386, 653, 792, 983
Hpy8I	GTNNAC	3 cut(s)	49, 284, 506
Hpy99I	CGWCG	2 cut(s)	727, 782
HpyAV	CCTTC	3 cut(s)	313, 392, 798
HpyCH4III	ACNGT	2 cut(s)	599, 939
HpyCH4IV	ACGT	2 cut(s)	51, 508
HpyCH4V	TGCA	9 cut(s)	101, 124, 439, 564, 602, 701, 746, 760, 841
HpyF3I	CTNAG	2 cut(s)	195, 207
HpySE526I	ACGT	2 cut(s)	51, 508
Hsp92I	GRCGYC	1 cut(s)	777
Hsp92II	CATG	8 cut(s)	230, 281, 443, 647, 841, 866, 923, 952
Ksp22I	TGATCA	1 cut(s)	916
Kzo9I	GATC	8 cut(s)	40, 175, 190, 347, 655, 859, 916, 985
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	2 cut(s)	469, 685
LweI	GCATC	2 cut(s)	88, 551
MaeI	CTAG	1 cut(s)	965
MaeII	ACGT	2 cut(s)	51, 508
MaeIII	GTNAC	4 cut(s)	322, 554, 737, 968
MalI	GATC	8 cut(s)	42, 177, 192, 349, 657, 861, 918, 987
MboI	GATC	8 cut(s)	40, 175, 190, 347, 655, 859, 916, 985
MboII	GAAGA	7 cut(s)	50, 59, 485, 743, 869, 913, 933
MflI	RGATCY	1 cut(s)	40
MluCI	AATT	9 cut(s)	61, 366, 588, 616, 682, 688, 731, 829, 888
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	2 cut(s)	204, 765
Mph1103I	ATGCAT	1 cut(s)	441
MroXI	GAANNNNTTC	1 cut(s)	611
MseI	TTAA	4 cut(s)	156, 705, 887, 1003
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	2 cut(s)	75, 570
MspR9I	CCNGG	3 cut(s)	75, 259, 571
MvaI	CCWGG	1 cut(s)	259
NciI	CCSGG	2 cut(s)	75, 571
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	8 cut(s)	40, 175, 190, 347, 655, 859, 916, 985
NlaIII	CATG	8 cut(s)	230, 281, 443, 647, 841, 866, 923, 952
NlaIV	GGNNCC	1 cut(s)	796
NmuCI	GTSAC	2 cut(s)	737, 968
NsiI	ATGCAT	1 cut(s)	441
NspI	RCATGY	2 cut(s)	841, 952
PasI	CCCWGGG	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	611
PfeI	GAWTC	3 cut(s)	109, 163, 312
PflMI	CCANNNNNTGG	1 cut(s)	668
PkrI	GCNGC	2 cut(s)	484, 700
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	794
Psp5II	RGGWCCY	1 cut(s)	794
Psp6I	CCWGG	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	796
PspPI	GGNCC	1 cut(s)	794
PspPPI	RGGWCCY	1 cut(s)	794
PsuI	RGATCY	1 cut(s)	40
RsaI	GTAC	4 cut(s)	200, 245, 272, 924
RsaNI	GTAC	4 cut(s)	199, 244, 271, 923
SaqAI	TTAA	4 cut(s)	156, 705, 887, 1003
SatI	GCNGC	2 cut(s)	483, 699
Sau3AI	GATC	8 cut(s)	40, 175, 190, 347, 655, 859, 916, 985
Sau96I	GGNCC	1 cut(s)	794
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	3 cut(s)	75, 259, 571
SfaNI	GCATC	2 cut(s)	88, 551
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	1 cut(s)	794
SmlI	CTYRAG	1 cut(s)	844
SmoI	CTYRAG	1 cut(s)	844
Sse9I	AATT	9 cut(s)	61, 366, 588, 616, 682, 688, 731, 829, 888
SsiI	CCGC	2 cut(s)	71, 696
SspMI	CTAG	1 cut(s)	965
StyD4I	CCNGG	3 cut(s)	73, 257, 569
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	2 cut(s)	599, 939
TaiI	ACGT	2 cut(s)	54, 511
TaqI	TCGA	4 cut(s)	82, 174, 295, 722
TasI	AATT	9 cut(s)	61, 366, 588, 616, 682, 688, 731, 829, 888
TfiI	GAWTC	3 cut(s)	109, 163, 312
Tru1I	TTAA	4 cut(s)	156, 705, 887, 1003
Tru9I	TTAA	4 cut(s)	156, 705, 887, 1003
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	2 cut(s)	737, 968
TseI	GCWGC	2 cut(s)	482, 698
Tsp45I	GTSAC	2 cut(s)	737, 968
TspDTI	ATGAA	8 cut(s)	22, 351, 456, 486, 510, 530, 660, 968
TspRI	CASTG	1 cut(s)	604
Van91I	CCANNNNNTGG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	794
XagI	CCTNNNNNAGG	1 cut(s)	759
XapI	RAATTY	2 cut(s)	61, 731
XceI	RCATGY	2 cut(s)	841, 952
XmnI	GAANNNNTTC	1 cut(s)	611
XspI	CTAG	1 cut(s)	965
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.