FvH4_1g28660

psbP domain-containing protein 6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012358
Physical Location & Seq
Forward (+)
20963856 .. 20967153
3298 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28660.t3

Sequence Viewer

Length: 804 bp
ATGGCGACCAGTGCTCCTCAGAGACCTCCGATCATGATCCCCAGTTCTAAATACAAGTTGGGTTCGGGCCAGTGTAGTTCAAAACAGCAGTCTCAACTTCCCACATTAGTCCCTCAAGAGAATCGCCAACAGAGTATGATTGTGAAGAGAAGAGAGTTGATGTTGGGTTTGAGTATGGTTCCAGCCATTGCAATGGAGCCTCTGCCTTCTGTAGCAAGGGAGGTTCTTGTGGGCTCCTATCTCCCACCCTCAACTTCCGACCCTTCTTTCGTTCTCTTCAAAGCCTCTGCTAAAGACACTCCCGCTCTTCGCGCAGGAAACGTGCAGCCTTACCAGTTCATCCTTCCCCCGACATGGAAACAGACACGTGTAGCGAACATACTATCTGGAAATTACTGCCAGCCAAAATGTGCAGAGCCATGGGTGGAGGTAAAGTTTGAAGATGAAAAACAAGGAAAGCTTCAGGTTGTGGCTTCACCTTTGATACGCCTGACCAATAAGCCTAATGCATCCATTGAAGATATTGGAAACCCTGAAAAGCTGATTGCTTCTCTTGGACCTTTTGTAACTGGGAACACCTATGATCCTGATGAGCTTCTTGAGACCAAGGTTGAGAAACGAGGCGATCTCACGTACTACAATTATGTGCTGGAGACTCCATTTGCACTGACAGGTTCCCACAATCTTGCAAAGGCCACAGCTAAGGGAAACACTGTTGTCTTATTTGTGGTTAGTGCAAATGACAAACAGTGGCAAGCATCTCAGAAGATTCTAAAAGCCATGCTTGATTCCTTTGAGGTTTAG

Protein Analysis

268

Amino Acids

29.38

Weight (kDa)

8.99

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 109 - 266 3e-10 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56650
fragaria_vesca FvH4_1g28660 FvH4_1g28660 FvH4_1g28660
malus_domestica MD03G1200900.v1.1
prunus_persica Prupe.4G213200_v2.0.a1
pyrus_communis pycom03g15240
rosa_chinensis RchiOBHm_Chr3g0492661 RchiOBHm_Chr3g0492671
rosa_laevigata RLG00000022751
rosa_multiflora Rmu_sc0000831.1_g000013
rosa_roxburghii Rroxscaffold_6G00392150
rosa_rugosa Rorug03G0255600
rosa_samantha Rh3AG305700 Rh3AG305800 Rh3BG342100 Rh3CG339500 Rh3DG341400
rosa_wichuraiana Rw3G026920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 305
AccII CGCG 1 cut(s) 312
AciI CCGC 1 cut(s) 303
AclWI GGATC 2 cut(s) 31, 578
AcuI CTGAAG 1 cut(s) 446
AcvI CACGTG 1 cut(s) 368
AfaI GTAC 1 cut(s) 635
AfiI CCNNNNNNNGG 1 cut(s) 354
AflIII ACRYGT 2 cut(s) 365, 367
AgsI TTSAA 4 cut(s) 81, 280, 440, 518
AluBI AGCT 4 cut(s) 460, 541, 595, 701
AluI AGCT 4 cut(s) 460, 541, 595, 701
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 4 cut(s) 16, 96, 596, 647
AlwI GGATC 2 cut(s) 31, 578
AoxI GGCC 2 cut(s) 67, 693
ApeKI GCWGC 1 cut(s) 325
ArsI GACNNNNNNTTYG 4 cut(s) 74, 106, 251, 283
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 2 cut(s) 67, 557
AsuHPI GGTGA 1 cut(s) 468
AvaII GGWCC 1 cut(s) 557
BanII GRGCYC 1 cut(s) 236
BbrPI CACGTG 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 337
BcoDI GTCTC 4 cut(s) 16, 96, 596, 647
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 1 cut(s) 326
BlsI GCNGC 1 cut(s) 327
Bme18I GGWCC 1 cut(s) 557
BmgT120I GGNCC 2 cut(s) 67, 557
BmiI GGNNCC 4 cut(s) 180, 198, 235, 676
BmrI ACTGGG 2 cut(s) 36, 579
BmsI GCATC 2 cut(s) 518, 767
BmuI ACTGGG 2 cut(s) 36, 579
BplI GAGNNNNNCTC 2 cut(s) 612, 644
BpmI CTGGAG 1 cut(s) 671
Bpu10I CCTNAGC 1 cut(s) 702
BpuEI CTTGAG 2 cut(s) 99, 620
BsaAI YACGTR 2 cut(s) 368, 633
BsaBI GATNNNNATC 1 cut(s) 35
BsaI GGTCTC 2 cut(s) 16, 596
BsaJI CCNNGG 2 cut(s) 419, 606
BsaXI ACNNNNNCTCC 3 cut(s) 28, 419, 449
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse1I ACTGG 5 cut(s) 9, 42, 70, 334, 574
Bse3DI GCAATG 2 cut(s) 186, 198
Bse8I GATNNNNATC 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 419, 606
BseGI GGATG 2 cut(s) 339, 509
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 354
BseMI GCAATG 2 cut(s) 186, 198
BseMII CTCAG 2 cut(s) 32, 776
BseNI ACTGG 5 cut(s) 9, 42, 70, 334, 574
BseRI GAGGAG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 337
BsgI GTGCAG 2 cut(s) 344, 432
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 2 cut(s) 69, 695
BsiHKAI GWGCWC 1 cut(s) 16
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 354
BsmAI GTCTC 4 cut(s) 16, 96, 596, 647
BsmFI GGGAC 1 cut(s) 95
BsnI GGCC 2 cut(s) 69, 695
Bso31I GGTCTC 2 cut(s) 16, 596
Bsp1286I GDGCHC 2 cut(s) 16, 236
Bsp143I GATC 4 cut(s) 30, 36, 583, 625
Bsp19I CCATGG 1 cut(s) 419
BspACI CCGC 1 cut(s) 303
BspANI GGCC 2 cut(s) 69, 695
BspCNI CTCAG 2 cut(s) 31, 775
BspFNI CGCG 1 cut(s) 312
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 4 cut(s) 180, 198, 235, 676
BspPI GGATC 2 cut(s) 31, 578
BspQI GCTCTTC 1 cut(s) 312
BspTNI GGTCTC 2 cut(s) 16, 596
BsrBI CCGCTC 1 cut(s) 305
BsrDI GCAATG 2 cut(s) 186, 198
BsrI ACTGG 5 cut(s) 9, 42, 70, 334, 574
BssECI CCNNGG 2 cut(s) 419, 606
BssMI GATC 4 cut(s) 30, 36, 583, 625
BssT1I CCWWGG 2 cut(s) 419, 606
Bst4CI ACNGT 2 cut(s) 715, 750
Bst6I CTCTTC 4 cut(s) 140, 145, 281, 312
BstBAI YACGTR 2 cut(s) 368, 633
BstC8I GCNNGC 2 cut(s) 401, 756
BstDEI CTNAG 3 cut(s) 18, 702, 762
BstDSI CCRYGG 1 cut(s) 419
BstF5I GGATG 2 cut(s) 339, 509
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 4 cut(s) 33, 39, 586, 628
BstMAI GTCTC 4 cut(s) 16, 96, 596, 647
BstMBI GATC 4 cut(s) 30, 36, 583, 625
BstMWI GCNNNNNNNGC 2 cut(s) 11, 311
BstSFI CTRYAG 1 cut(s) 210
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 337
BstXI CCANNNNNNTGG 1 cut(s) 193
BsuRI GGCC 2 cut(s) 69, 695
BtgI CCRYGG 1 cut(s) 419
BtsCI GGATG 2 cut(s) 339, 509
BtsIMutI CAGTG 5 cut(s) 16, 77, 665, 711, 755
Cac8I GCNNGC 2 cut(s) 401, 756
CciI TCATGA 1 cut(s) 33
CfoI GCGC 1 cut(s) 314
Cfr13I GGNCC 2 cut(s) 67, 557
Csp6I GTAC 1 cut(s) 634
CviAII CATG 4 cut(s) 34, 354, 420, 781
CviQI GTAC 1 cut(s) 634
DdeI CTNAG 3 cut(s) 18, 702, 762
DpnI GATC 4 cut(s) 32, 38, 585, 627
DpnII GATC 4 cut(s) 30, 36, 583, 625
Eam1104I CTCTTC 4 cut(s) 140, 145, 281, 312
EarI CTCTTC 4 cut(s) 140, 145, 281, 312
Eco130I CCWWGG 2 cut(s) 419, 606
Eco24I GRGCYC 1 cut(s) 236
Eco31I GGTCTC 2 cut(s) 16, 596
Eco47I GGWCC 1 cut(s) 557
Eco57I CTGAAG 1 cut(s) 446
Eco72I CACGTG 1 cut(s) 368
EcoT14I CCWWGG 2 cut(s) 419, 606
EcoT22I ATGCAT 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 236
ErhI CCWWGG 2 cut(s) 419, 606
FaeI CATG 4 cut(s) 37, 357, 423, 784
FaiI YATR 9 cut(s) 35, 137, 176, 355, 380, 421, 582, 645, 782
FalI AAGNNNNNCTT 4 cut(s) 444, 476, 768, 800
FaqI GGGAC 1 cut(s) 95
FatI CATG 4 cut(s) 33, 353, 419, 780
FauI CCCGC 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 326
FokI GGATG 2 cut(s) 326, 496
FriOI GRGCYC 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 326
GlaI GCGC 1 cut(s) 313
GluI GCNGC 1 cut(s) 326
GsuI CTGGAG 1 cut(s) 671
HaeIII GGCC 2 cut(s) 69, 695
HhaI GCGC 1 cut(s) 314
Hin1II CATG 4 cut(s) 37, 357, 423, 784
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 4 cut(s) 121, 655, 769, 788
HphI GGTGA 1 cut(s) 468
Hpy188I TCNGA 4 cut(s) 21, 30, 259, 765
Hpy188III TCNNGA 5 cut(s) 34, 116, 387, 587, 599
HpyAV CCTTC 3 cut(s) 216, 273, 353
HpyCH4III ACNGT 2 cut(s) 715, 750
HpyCH4IV ACGT 3 cut(s) 321, 367, 632
HpyCH4V TGCA 7 cut(s) 191, 325, 413, 509, 665, 689, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 311
HpyF3I CTNAG 3 cut(s) 18, 702, 762
HpySE526I ACGT 3 cut(s) 321, 367, 632
Hsp92II CATG 4 cut(s) 37, 357, 423, 784
HspAI GCGC 1 cut(s) 312
Kzo9I GATC 4 cut(s) 30, 36, 583, 625
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 3 cut(s) 19, 196, 239
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 2 cut(s) 518, 767
MaeII ACGT 3 cut(s) 321, 367, 632
MaeIII GTNAC 1 cut(s) 565
MalI GATC 4 cut(s) 32, 38, 585, 627
MbiI CCGCTC 1 cut(s) 305
MboI GATC 4 cut(s) 30, 36, 583, 625
MboII GAAGA 7 cut(s) 157, 162, 268, 299, 452, 530, 778
MhlI GDGCHC 2 cut(s) 16, 236
MluCI AATT 2 cut(s) 391, 640
MlyI GAGTC 1 cut(s) 649
MmeI TCCRAC 1 cut(s) 282
Mph1103I ATGCAT 1 cut(s) 511
MslI CAYNNNNRTG 1 cut(s) 191
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 11, 311
NcoI CCATGG 1 cut(s) 419
NdeII GATC 4 cut(s) 30, 36, 583, 625
NlaIII CATG 4 cut(s) 37, 357, 423, 784
NlaIV GGNNCC 4 cut(s) 180, 198, 235, 676
NsiI ATGCAT 1 cut(s) 511
PagI TCATGA 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 312
PfeI GAWTC 3 cut(s) 121, 769, 788
PkrI GCNGC 1 cut(s) 327
PleI GAGTC 1 cut(s) 649
PmaCI CACGTG 1 cut(s) 368
PmlI CACGTG 1 cut(s) 368
PpsI GAGTC 1 cut(s) 649
Ppu21I YACGTR 2 cut(s) 368, 633
PspCI CACGTG 1 cut(s) 368
PspN4I GGNNCC 4 cut(s) 180, 198, 235, 676
PspPI GGNCC 2 cut(s) 67, 557
RsaI GTAC 1 cut(s) 635
RsaNI GTAC 1 cut(s) 634
RseI CAYNNNNRTG 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 312
SatI GCNGC 1 cut(s) 326
Sau3AI GATC 4 cut(s) 30, 36, 583, 625
Sau96I GGNCC 2 cut(s) 67, 557
SchI GAGTC 1 cut(s) 649
SduI GDGCHC 2 cut(s) 16, 236
SfaNI GCATC 2 cut(s) 518, 767
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 1 cut(s) 557
SmiMI CAYNNNNRTG 1 cut(s) 191
SmlI CTYRAG 2 cut(s) 114, 599
SmoI CTYRAG 2 cut(s) 114, 599
Sse9I AATT 2 cut(s) 391, 640
SsiI CCGC 1 cut(s) 303
StyI CCWWGG 2 cut(s) 419, 606
TaaI ACNGT 2 cut(s) 715, 750
TaiI ACGT 3 cut(s) 324, 370, 635
TasI AATT 2 cut(s) 391, 640
TfiI GAWTC 3 cut(s) 121, 769, 788
TscAI CASTG 5 cut(s) 16, 77, 672, 718, 755
TseI GCWGC 1 cut(s) 325
TspDTI ATGAA 2 cut(s) 328, 459
TspRI CASTG 5 cut(s) 16, 77, 672, 718, 755
VpaK11BI GGWCC 1 cut(s) 557
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.