Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0012358

Physical Location & Seq

Genomic Coordinates Forward (+)

37939151 .. 37962225

Gene Structure 23075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG305800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTCGAGAAGGTCAAATCAGTCTTTTAATAGAAACGTGCAGCCTTACCAGTTCATCCTTCCCCCGACATGGAAACAGACACGCGTAGCAAACATATTATCTGGTAATTACTGCCAGCCAAAATGTGTAGAGCCATGGGTGGAGGTGAAATTTGAAGATGAAAAACAAGGAAAGCTTCAGGTTGTGGCTTCACCTTTGATACGCCTGACCAATAAGCCAAATGCATCTATTGAAGATATTGGCAACCCTGAGAAGCTGATTGCTTCTCTTGGACCTTTTGTAACTGGGAACACCTATGATCCTGATGAGCTCCTTGAGACCAAAGTTGAAAAACGTGGCGATCTCACGGTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0031976 GO:0031977 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

118

Amino Acids

13.39

Weight (kDa)

7.72

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56650
fragaria_vesca	FvH4_1g28660 FvH4_1g28660 FvH4_1g28660
malus_domestica	MD03G1200900.v1.1
prunus_persica	Prupe.4G213200_v2.0.a1
pyrus_communis	pycom03g15240
rosa_chinensis	RchiOBHm_Chr3g0492661 RchiOBHm_Chr3g0492671
rosa_laevigata	RLG00000022751
rosa_multiflora	Rmu_sc0000831.1_g000013
rosa_roxburghii	Rroxscaffold_6G00392150
rosa_rugosa	Rorug03G0255600
rosa_samantha	Rh3AG305700 Rh3AG305800 Rh3BG342100 Rh3CG339500 Rh3DG341400
rosa_wichuraiana	Rw3G026920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	84
AclWI	GGATC	1 cut(s)	293
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	69
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	155, 233, 329
AluBI	AGCT	3 cut(s)	175, 256, 310
AluI	AGCT	3 cut(s)	175, 256, 310
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	40
ApoI	RAATTY	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	157, 183
AvaII	GGWCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	311
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	2 cut(s)	49, 289
BseDI	CCNNGG	1 cut(s)	134
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	49, 289
BseXI	GCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	311
Bso31I	GGTCTC	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	298, 340
Bsp19I	CCATGG	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	241
BspFNI	CGCG	1 cut(s)	84
BspPI	GGATC	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	311
BsrI	ACTGG	2 cut(s)	49, 289
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	2 cut(s)	298, 340
BssT1I	CCWWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	54
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	2 cut(s)	301, 343
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	2 cut(s)	298, 340
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	272
CviAII	CATG	2 cut(s)	69, 135
CviJI	RGCY	8 cut(s)	43, 118, 133, 175, 188, 217, 256, 310
CviKI_1	RGCY	8 cut(s)	43, 118, 133, 175, 188, 217, 256, 310
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	2 cut(s)	300, 342
DpnII	GATC	2 cut(s)	298, 340
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	312
Eco31I	GGTCTC	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	272
Eco53kI	GAGCTC	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	134
EcoT22I	ATGCAT	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	134
FaeI	CATG	2 cut(s)	72, 138
FaiI	YATR	4 cut(s)	70, 95, 136, 297
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FatI	CATG	2 cut(s)	68, 134
Fnu4HI	GCNGC	1 cut(s)	41
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	1 cut(s)	41
GluI	GCNGC	1 cut(s)	41
Hin1II	CATG	2 cut(s)	72, 138
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	173
HpaI	GTTAAC	1 cut(s)	352
HphI	GGTGA	2 cut(s)	157, 183
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188III	TCNNGA	2 cut(s)	6, 302
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	2 cut(s)	3, 68
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	2 cut(s)	36, 334
HpyCH4V	TGCA	2 cut(s)	40, 224
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	2 cut(s)	36, 334
Hsp92II	CATG	2 cut(s)	72, 138
KspAI	GTTAAC	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	298, 340
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	8 cut(s)	62, 87, 128, 164, 218, 261, 270, 315
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	1 cut(s)	233
MaeII	ACGT	2 cut(s)	36, 334
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	2 cut(s)	300, 342
MboI	GATC	2 cut(s)	298, 340
MboII	GAAGA	2 cut(s)	167, 245
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	2 cut(s)	106, 149
MluI	ACGCGT	1 cut(s)	82
MnlI	CCTC	1 cut(s)	136
Mph1103I	ATGCAT	1 cut(s)	226
MseI	TTAA	2 cut(s)	27, 351
MvnI	CGCG	1 cut(s)	84
NcoI	CCATGG	1 cut(s)	134
NdeII	GATC	2 cut(s)	298, 340
NlaIII	CATG	2 cut(s)	72, 138
NsiI	ATGCAT	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	272
SacI	GAGCTC	1 cut(s)	312
SaqAI	TTAA	2 cut(s)	27, 351
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	298, 340
Sau96I	GGNCC	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	312
SfaNI	GCATC	1 cut(s)	233
SinI	GGWCC	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	106, 149
SstI	GAGCTC	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	2 cut(s)	39, 337
TaqI	TCGA	1 cut(s)	5
TasI	AATT	2 cut(s)	106, 149
Tru1I	TTAA	2 cut(s)	27, 351
Tru9I	TTAA	2 cut(s)	27, 351
TseI	GCWGC	1 cut(s)	40
TspDTI	ATGAA	2 cut(s)	43, 174
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.