MD03G1200900.v1.1

psbP domain-containing protein 6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0012358
Physical Location & Seq
Reverse (-)
27435622 .. 27438242
2621 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1200900.v1.1.491

Sequence Viewer

Length: 813 bp
ATGGCTAGCGCTCCTTTACCTCCTCCGATACCTTCCTCTCTCGCCTCCTCCAAATGCCACTCTTCCTCACGTTCAAAACCGCCGCCACTTGTCTCGCCTTCTCCTCCGAATTCAATTCCATTACTTCCCAGACAAAAACGAAGGGAGTTGCTGCTGAAAACAGGACTTGGTCTGCTTCCTCTGGCTCTGGTTGAATCAATATTGAAAGTGCCTTCCGCAGAAGCTAAGGATGCGGTCGTGGGCTCCTATCTCCCGCCCTCACCTTCCGATTCTTCCTTCGTTGTCTTCAAAGCCACTCCTAAAGACACTCCCGCCCTTCGCGCTGGAAATGTGGAGCCCTACCAGTTCATCATTCCCCCAACCTGGAAACAGATGCGCGTAGCAAACATTTTATCTGGTAATTACTGCCAACCAAAATGTGCAGAGCCGTGGGTGGAGGTAAAATTTGAAGACGAAAAACAGGGAAAACTTCAGGTTGTGGCTTCACCTTTGATACGCCTGACCAATAAACCGAACGCAACAATTGAAGACATTGGAAACCCTGAGAAGGTAATTGCTTCTCTTGGCCCTTTCGTCACTGGAAACACATACGATCCAGATGAGCTCCTTGAGACTACAGTTGAGAAGCGTGGTGATTTGACGTACTACAAGTATGCGCTCGAGACCCCGTTTGCTCTCACAGGTTCTCACAATCTTGCAGTGGCAACAGCAAAGGGTAACACTGTTGTATTATTTGTGGTAAGTGCAAGTGAGAAACAATGGCAAGCATCTCAGAAGACGCTAAAAGCCATGCTCGATTCCTTTCAAGTGTAG

Protein Analysis

271

Amino Acids

29.22

Weight (kDa)

8.99

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 112 - 270 1.4e-12 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56650
fragaria_vesca FvH4_1g28660 FvH4_1g28660 FvH4_1g28660
malus_domestica MD03G1200900.v1.1
prunus_persica Prupe.4G213200_v2.0.a1
pyrus_communis pycom03g15240
rosa_chinensis RchiOBHm_Chr3g0492661 RchiOBHm_Chr3g0492671
rosa_laevigata RLG00000022751
rosa_multiflora Rmu_sc0000831.1_g000013
rosa_roxburghii Rroxscaffold_6G00392150
rosa_rugosa Rorug03G0255600
rosa_samantha Rh3AG305700 Rh3AG305800 Rh3BG342100 Rh3CG339500 Rh3DG341400
rosa_wichuraiana Rw3G026920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 321, 378
AciI CCGC 6 cut(s) 80, 83, 216, 233, 254, 312
AclWI GGATC 1 cut(s) 587
AcsI RAATTY 2 cut(s) 109, 443
AcuI CTGAAG 1 cut(s) 455
AfaI GTAC 1 cut(s) 644
AfeI AGCGCT 1 cut(s) 10
AfiI CCNNNNNNNGG 2 cut(s) 363, 547
AgsI TTSAA 8 cut(s) 75, 114, 194, 205, 289, 449, 527, 806
AjnI CCWGG 1 cut(s) 362
AluBI AGCT 2 cut(s) 224, 604
AluI AGCT 2 cut(s) 224, 604
Alw21I GWGCWC 1 cut(s) 606
Alw26I GTCTC 3 cut(s) 97, 605, 656
AlwI GGATC 1 cut(s) 587
Ama87I CYCGRG 1 cut(s) 659
Aor51HI AGCGCT 1 cut(s) 10
AoxI GGCC 1 cut(s) 565
ApeKI GCWGC 1 cut(s) 151
ApoI RAATTY 2 cut(s) 109, 443
AspLEI GCGC 4 cut(s) 11, 323, 378, 658
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 3 cut(s) 252, 477, 644
AsuNHI GCTAGC 1 cut(s) 5
AvaI CYCGRG 1 cut(s) 659
BanII GRGCYC 3 cut(s) 245, 339, 606
BbsI GAAGAC 4 cut(s) 277, 456, 534, 782
Bbv12I GWGCWC 1 cut(s) 606
BbvI GCAGC 1 cut(s) 138
BceAI ACGGC 1 cut(s) 412
BciT130I CCWGG 1 cut(s) 364
BcoDI GTCTC 3 cut(s) 97, 605, 656
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 615
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 2 cut(s) 83, 152
BlsI GCNGC 2 cut(s) 84, 153
Bme1390I CCNGG 1 cut(s) 364
BmeT110I CYCGRG 1 cut(s) 659
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 2 cut(s) 244, 336
BmrFI CCNGG 1 cut(s) 364
BmsI GCATC 3 cut(s) 220, 363, 776
BmtI GCTAGC 1 cut(s) 9
BpiI GAAGAC 4 cut(s) 277, 456, 534, 782
Bpu10I CCTNAGC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 629
BsaI GGTCTC 1 cut(s) 656
BsaJI CCNNGG 1 cut(s) 428
Bsc4I CCNNNNNNNGG 2 cut(s) 363, 547
Bse1I ACTGG 2 cut(s) 343, 583
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 428
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 2 cut(s) 363, 547
BseMII CTCAG 2 cut(s) 534, 785
BseNI ACTGG 2 cut(s) 343, 583
BseRI GAGGAG 3 cut(s) 12, 37, 93
BseXI GCAGC 1 cut(s) 138
BsgI GTGCAG 1 cut(s) 441
Bsh1236I CGCG 2 cut(s) 321, 378
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 1 cut(s) 567
BsiEI CGRYCG 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 606
BsiHKCI CYCGRG 1 cut(s) 659
BslI CCNNNNNNNGG 2 cut(s) 363, 547
BsmAI GTCTC 3 cut(s) 97, 605, 656
BsnI GGCC 1 cut(s) 567
Bso31I GGTCTC 1 cut(s) 656
BsoBI CYCGRG 1 cut(s) 659
Bsp1286I GDGCHC 3 cut(s) 245, 339, 606
Bsp143I GATC 1 cut(s) 592
BspACI CCGC 6 cut(s) 80, 83, 216, 233, 254, 312
BspANI GGCC 1 cut(s) 567
BspCNI CTCAG 2 cut(s) 535, 784
BspFNI CGCG 2 cut(s) 321, 378
BspLI GGNNCC 2 cut(s) 244, 336
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 587
BspTNI GGTCTC 1 cut(s) 656
BsrI ACTGG 2 cut(s) 343, 583
BssECI CCNNGG 1 cut(s) 428
BssMI GATC 1 cut(s) 592
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 2 cut(s) 619, 724
Bst6I CTCTTC 1 cut(s) 67
BstC8I GCNNGC 2 cut(s) 7, 765
BstDEI CTNAG 3 cut(s) 225, 543, 771
BstDSI CCRYGG 1 cut(s) 428
BstF5I GGATG 1 cut(s) 235
BstFNI CGCG 2 cut(s) 321, 378
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 4 cut(s) 11, 323, 378, 658
BstKTI GATC 1 cut(s) 595
BstMAI GTCTC 3 cut(s) 97, 605, 656
BstMBI GATC 1 cut(s) 592
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 2 cut(s) 230, 320
BstNI CCWGG 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 362
BstSFI CTRYAG 1 cut(s) 615
BstUI CGCG 2 cut(s) 321, 378
BstV1I GCAGC 1 cut(s) 138
BstV2I GAAGAC 4 cut(s) 277, 456, 534, 782
BsuRI GGCC 1 cut(s) 567
BtgI CCRYGG 1 cut(s) 428
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 705
BtsIMutI CAGTG 3 cut(s) 576, 705, 720
Cac8I GCNNGC 2 cut(s) 7, 765
CfoI GCGC 4 cut(s) 11, 323, 378, 658
Cfr13I GGNCC 1 cut(s) 566
CseI GACGC 1 cut(s) 787
Csp6I GTAC 1 cut(s) 643
CviAII CATG 1 cut(s) 790
CviQI GTAC 1 cut(s) 643
DdeI CTNAG 3 cut(s) 225, 543, 771
DpnI GATC 1 cut(s) 594
DpnII GATC 1 cut(s) 592
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 604
Eco24I GRGCYC 3 cut(s) 245, 339, 606
Eco31I GGTCTC 1 cut(s) 656
Eco47III AGCGCT 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 604
Eco57I CTGAAG 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 659
EcoICRI GAGCTC 1 cut(s) 604
EcoRI GAATTC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 362
EcoT38I GRGCYC 3 cut(s) 245, 339, 606
FaeI CATG 1 cut(s) 793
FaiI YATR 3 cut(s) 589, 654, 791
FatI CATG 1 cut(s) 789
FauI CCCGC 2 cut(s) 261, 319
Fnu4HI GCNGC 2 cut(s) 83, 152
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 3 cut(s) 245, 339, 606
Fsp4HI GCNGC 2 cut(s) 83, 152
FspBI CTAG 1 cut(s) 6
GlaI GCGC 4 cut(s) 10, 322, 377, 657
GluI GCNGC 2 cut(s) 83, 152
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 1 cut(s) 567
HgaI GACGC 1 cut(s) 787
HhaI GCGC 4 cut(s) 11, 323, 378, 658
Hin1II CATG 1 cut(s) 793
Hin6I GCGC 4 cut(s) 9, 321, 376, 656
HinP1I GCGC 4 cut(s) 9, 321, 376, 656
HinfI GANTC 3 cut(s) 194, 269, 797
HphI GGTGA 3 cut(s) 252, 477, 644
Hpy188I TCNGA 4 cut(s) 27, 108, 268, 774
Hpy188III TCNNGA 2 cut(s) 596, 661
HpyAV CCTTC 8 cut(s) 42, 108, 135, 222, 273, 286, 326, 541
HpyCH4III ACNGT 2 cut(s) 619, 724
HpyCH4IV ACGT 2 cut(s) 70, 641
HpyCH4V TGCA 3 cut(s) 422, 698, 746
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 320
HpyF3I CTNAG 3 cut(s) 225, 543, 771
HpySE526I ACGT 2 cut(s) 70, 641
Hsp92II CATG 1 cut(s) 793
HspAI GCGC 4 cut(s) 9, 321, 376, 656
Kzo9I GATC 1 cut(s) 592
LmnI GCTCC 4 cut(s) 16, 248, 334, 609
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 3 cut(s) 220, 363, 776
MaeI CTAG 1 cut(s) 6
MaeII ACGT 2 cut(s) 70, 641
MaeIII GTNAC 2 cut(s) 574, 716
MalI GATC 1 cut(s) 594
MboI GATC 1 cut(s) 592
MboII GAAGA 6 cut(s) 54, 264, 277, 461, 539, 787
MfeI CAATTG 1 cut(s) 522
MhlI GDGCHC 3 cut(s) 245, 339, 606
MluCI AATT 6 cut(s) 109, 114, 400, 443, 522, 552
MspR9I CCNGG 1 cut(s) 364
MunI CAATTG 1 cut(s) 522
MvaI CCWGG 1 cut(s) 364
MvnI CGCG 2 cut(s) 321, 378
MwoI GCNNNNNNNGC 2 cut(s) 230, 320
NdeII GATC 1 cut(s) 592
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 793
NlaIV GGNNCC 2 cut(s) 244, 336
NmuCI GTSAC 1 cut(s) 574
PaeR7I CTCGAG 1 cut(s) 659
PfeI GAWTC 3 cut(s) 194, 269, 797
PflFI GACNNNGTC 1 cut(s) 168
PkrI GCNGC 2 cut(s) 84, 153
Psp124BI GAGCTC 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
PspN4I GGNNCC 2 cut(s) 244, 336
PspPI GGNCC 1 cut(s) 566
PsyI GACNNNGTC 1 cut(s) 168
RsaI GTAC 1 cut(s) 644
RsaNI GTAC 1 cut(s) 643
SacI GAGCTC 1 cut(s) 606
SatI GCNGC 2 cut(s) 83, 152
Sau3AI GATC 1 cut(s) 592
Sau96I GGNCC 1 cut(s) 566
ScrFI CCNGG 1 cut(s) 364
SduI GDGCHC 3 cut(s) 245, 339, 606
SfaNI GCATC 3 cut(s) 220, 363, 776
SfcI CTRYAG 1 cut(s) 615
Sfr274I CTCGAG 1 cut(s) 659
SlaI CTCGAG 1 cut(s) 659
SmlI CTYRAG 2 cut(s) 608, 659
SmoI CTYRAG 2 cut(s) 608, 659
Sse9I AATT 6 cut(s) 109, 114, 400, 443, 522, 552
SsiI CCGC 6 cut(s) 80, 83, 216, 233, 254, 312
SspI AATATT 1 cut(s) 201
SspMI CTAG 1 cut(s) 6
SstI GAGCTC 1 cut(s) 606
StyD4I CCNGG 1 cut(s) 362
TaaI ACNGT 2 cut(s) 619, 724
TaiI ACGT 2 cut(s) 73, 644
TaqI TCGA 2 cut(s) 660, 795
TasI AATT 6 cut(s) 109, 114, 400, 443, 522, 552
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 3 cut(s) 194, 269, 797
TscAI CASTG 3 cut(s) 583, 705, 727
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 1 cut(s) 337
TspRI CASTG 3 cut(s) 583, 705, 727
Tth111I GACNNNGTC 1 cut(s) 168
XapI RAATTY 2 cut(s) 109, 443
XhoI CTCGAG 1 cut(s) 659
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.