Rh3AG305700

psbP domain-containing protein 6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0012358
Physical Location & Seq
Forward (+)
37936525 .. 37938769
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG305700.1

Sequence Viewer

Length: 795 bp
ATGGCGACCAGTGCTCCTCAGAGACCTCCGATCATGATCCCCAATTCAAAATACAAGTTGTGTTCGGGTCAGTGTAGTTCAAAACAGCATTGTCTTCTCACATTAGGAGCCCCTCAGGAGAAGAGTATGATGGTGAAGAGAAGAGAGTTGATGTTGGGTTTCAGTATGGTTCCAGCCATTGCAATCGAGGCGCTGCCTTCAGAAGCCAGGGAGGTCGCTGTGGGCTCCTATCTCCCACCCTCAACTTCCGACCCTTCATTCGTTCTCTTCCAAGCCTCTGCTAAAGACACTCCCGCTCTTCGCGCAGGAAACGTGCAGCCTTACCAGTTCATCCTTCCCCCAACATGGAAACAGACACGCGTAGCAAACATATTATCTGGTAATTACTGCCAGCCAAAATGTGCAGAGCCATGGGTGGAGGTGAAATTTGAAGATGAAAAACAAGGAAAGCTTCAGGTTGTGGCTTCACCTTTGATACGCCTGACCAATAAGCCAAATGCATCTATTGAAGATATTGGCAACCCTGAGAAGCTGATTGCTTCTCTTGGACCTTTTGTAACTGGGAACACCTATGATCCTGATGAGCTCCTTGAGACCAAAGTTGAAAAACGTGGCGATCTCACGTACTACAACTATGTGCTGGAGACTCCATTTGCACTGACAGGTTCCCACAATCTTGCAAAGGCCACAGCTAAGGGGAACACTGTTGTCTTATTTGTGGTTAGCGCAAATGACAAGCAGTGGCAATCATCTCAGAAGATTCTAAAAGCCATGCTTGATTCTTTTCAGGTGTAG

Protein Analysis

264

Amino Acids

29.01

Weight (kDa)

8.7

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 107 - 264 2.2e-10 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56650
fragaria_vesca FvH4_1g28660 FvH4_1g28660 FvH4_1g28660
malus_domestica MD03G1200900.v1.1
prunus_persica Prupe.4G213200_v2.0.a1
pyrus_communis pycom03g15240
rosa_chinensis RchiOBHm_Chr3g0492661 RchiOBHm_Chr3g0492671
rosa_laevigata RLG00000022751
rosa_multiflora Rmu_sc0000831.1_g000013
rosa_roxburghii Rroxscaffold_6G00392150
rosa_rugosa Rorug03G0255600
rosa_samantha Rh3AG305700 Rh3AG305800 Rh3BG342100 Rh3CG339500 Rh3DG341400
rosa_wichuraiana Rw3G026920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 296
AccII CGCG 2 cut(s) 303, 360
AciI CCGC 1 cut(s) 294
AclWI GGATC 2 cut(s) 31, 569
AcsI RAATTY 1 cut(s) 425
AcuI CTGAAG 2 cut(s) 183, 437
AfaI GTAC 1 cut(s) 626
AfiI CCNNNNNNNGG 1 cut(s) 345
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 5 cut(s) 48, 81, 431, 509, 605
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 4 cut(s) 451, 532, 586, 692
AluI AGCT 4 cut(s) 451, 532, 586, 692
Alw21I GWGCWC 2 cut(s) 16, 588
Alw26I GTCTC 3 cut(s) 16, 587, 638
AlwI GGATC 2 cut(s) 31, 569
AoxI GGCC 1 cut(s) 684
ApeKI GCWGC 2 cut(s) 193, 316
ApoI RAATTY 1 cut(s) 425
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AspLEI GCGC 3 cut(s) 193, 305, 728
AspS9I GGNCC 1 cut(s) 548
AsuHPI GGTGA 3 cut(s) 145, 433, 459
AvaII GGWCC 1 cut(s) 548
AxyI CCTNAGG 1 cut(s) 114
BanII GRGCYC 3 cut(s) 112, 227, 588
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 2 cut(s) 16, 588
BbvI GCAGC 2 cut(s) 180, 328
BccI CCATC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 208
BcoDI GTCTC 3 cut(s) 16, 587, 638
BfoI RGCGCY 1 cut(s) 194
BisI GCNGC 2 cut(s) 194, 317
BlsI GCNGC 2 cut(s) 195, 318
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 548
BmiI GGNNCC 4 cut(s) 109, 171, 226, 667
BmrFI CCNGG 1 cut(s) 208
BmrI ACTGGG 1 cut(s) 570
BmsI GCATC 1 cut(s) 509
BmuI ACTGGG 1 cut(s) 570
BpiI GAAGAC 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 662
Bpu10I CCTNAGC 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 611
BsaAI YACGTR 1 cut(s) 624
BsaBI GATNNNNATC 1 cut(s) 35
BsaI GGTCTC 2 cut(s) 16, 587
BsaJI CCNNGG 2 cut(s) 207, 410
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse1I ACTGG 3 cut(s) 9, 325, 565
Bse21I CCTNAGG 1 cut(s) 114
Bse3DI GCAATG 1 cut(s) 177
Bse8I GATNNNNATC 1 cut(s) 35
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 207, 410
BseGI GGATG 1 cut(s) 330
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 4 cut(s) 32, 128, 516, 767
BseNI ACTGG 3 cut(s) 9, 325, 565
BseRI GAGGAG 1 cut(s) 6
BseXI GCAGC 2 cut(s) 180, 328
BsgI GTGCAG 2 cut(s) 335, 423
Bsh1236I CGCG 2 cut(s) 303, 360
BshFI GGCC 1 cut(s) 686
BsiHKAI GWGCWC 2 cut(s) 16, 588
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 3 cut(s) 16, 587, 638
BsnI GGCC 1 cut(s) 686
Bso31I GGTCTC 2 cut(s) 16, 587
Bsp1286I GDGCHC 4 cut(s) 16, 112, 227, 588
Bsp143I GATC 4 cut(s) 30, 36, 574, 616
Bsp19I CCATGG 1 cut(s) 410
BspACI CCGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 686
BspCNI CTCAG 4 cut(s) 31, 127, 517, 766
BspFNI CGCG 2 cut(s) 303, 360
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 4 cut(s) 109, 171, 226, 667
BspPI GGATC 2 cut(s) 31, 569
BspQI GCTCTTC 1 cut(s) 303
BspTNI GGTCTC 2 cut(s) 16, 587
BsrBI CCGCTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 177
BsrI ACTGG 3 cut(s) 9, 325, 565
BssECI CCNNGG 2 cut(s) 207, 410
BssMI GATC 4 cut(s) 30, 36, 574, 616
BssT1I CCWWGG 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 706
Bst6I CTCTTC 5 cut(s) 116, 131, 136, 272, 303
BstBAI YACGTR 1 cut(s) 624
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 5 cut(s) 18, 114, 525, 693, 753
BstDSI CCRYGG 1 cut(s) 410
BstF5I GGATG 1 cut(s) 330
BstFNI CGCG 2 cut(s) 303, 360
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 3 cut(s) 193, 305, 728
BstKTI GATC 4 cut(s) 33, 39, 577, 619
BstMAI GTCTC 3 cut(s) 16, 587, 638
BstMBI GATC 4 cut(s) 30, 36, 574, 616
BstMWI GCNNNNNNNGC 3 cut(s) 11, 188, 302
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstUI CGCG 2 cut(s) 303, 360
BstV1I GCAGC 2 cut(s) 180, 328
BstV2I GAAGAC 1 cut(s) 86
Bsu36I CCTNAGG 1 cut(s) 114
BsuRI GGCC 1 cut(s) 686
BtgI CCRYGG 1 cut(s) 410
BtsCI GGATG 1 cut(s) 330
BtsI GCAGTG 1 cut(s) 746
BtsIMutI CAGTG 5 cut(s) 16, 77, 656, 702, 746
Cac8I GCNNGC 1 cut(s) 392
CciI TCATGA 1 cut(s) 33
CfoI GCGC 3 cut(s) 193, 305, 728
Cfr13I GGNCC 1 cut(s) 548
Csp6I GTAC 1 cut(s) 625
CviAII CATG 4 cut(s) 34, 345, 411, 772
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 5 cut(s) 18, 114, 525, 693, 753
DpnI GATC 4 cut(s) 32, 38, 576, 618
DpnII GATC 4 cut(s) 30, 36, 574, 616
Eam1104I CTCTTC 5 cut(s) 116, 131, 136, 272, 303
EarI CTCTTC 5 cut(s) 116, 131, 136, 272, 303
Ecl136II GAGCTC 1 cut(s) 586
Eco130I CCWWGG 1 cut(s) 410
Eco24I GRGCYC 3 cut(s) 112, 227, 588
Eco31I GGTCTC 2 cut(s) 16, 587
Eco47I GGWCC 1 cut(s) 548
Eco53kI GAGCTC 1 cut(s) 586
Eco57I CTGAAG 2 cut(s) 183, 437
Eco81I CCTNAGG 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 410
EcoT22I ATGCAT 1 cut(s) 502
EcoT38I GRGCYC 3 cut(s) 112, 227, 588
ErhI CCWWGG 1 cut(s) 410
FaeI CATG 4 cut(s) 37, 348, 414, 775
FaiI YATR 9 cut(s) 35, 128, 167, 346, 371, 412, 573, 636, 773
FalI AAGNNNNNCTT 4 cut(s) 435, 467, 759, 791
FatI CATG 4 cut(s) 33, 344, 410, 771
FauI CCCGC 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 194, 317
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 3 cut(s) 112, 227, 588
Fsp4HI GCNGC 2 cut(s) 194, 317
GlaI GCGC 3 cut(s) 192, 304, 727
GluI GCNGC 2 cut(s) 194, 317
GsuI CTGGAG 1 cut(s) 662
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 1 cut(s) 686
HhaI GCGC 3 cut(s) 193, 305, 728
Hin1II CATG 4 cut(s) 37, 348, 414, 775
Hin6I GCGC 3 cut(s) 191, 303, 726
HinP1I GCGC 3 cut(s) 191, 303, 726
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 3 cut(s) 646, 760, 779
HphI GGTGA 3 cut(s) 145, 433, 459
Hpy188I TCNGA 5 cut(s) 21, 30, 202, 250, 756
Hpy188III TCNNGA 3 cut(s) 34, 116, 578
HpyAV CCTTC 3 cut(s) 207, 264, 344
HpyCH4III ACNGT 1 cut(s) 706
HpyCH4IV ACGT 3 cut(s) 312, 610, 623
HpyCH4V TGCA 6 cut(s) 182, 316, 404, 500, 656, 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 188, 302
HpyF3I CTNAG 5 cut(s) 18, 114, 525, 693, 753
HpySE526I ACGT 3 cut(s) 312, 610, 623
Hsp92II CATG 4 cut(s) 37, 348, 414, 775
HspAI GCGC 3 cut(s) 191, 303, 726
Kzo9I GATC 4 cut(s) 30, 36, 574, 616
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 4 cut(s) 19, 107, 230, 591
Lsp1109I GCAGC 2 cut(s) 180, 328
LweI GCATC 1 cut(s) 509
MaeII ACGT 3 cut(s) 312, 610, 623
MaeIII GTNAC 1 cut(s) 556
MalI GATC 4 cut(s) 32, 38, 576, 618
MbiI CCGCTC 1 cut(s) 296
MboI GATC 4 cut(s) 30, 36, 574, 616
MboII GAAGA 9 cut(s) 86, 133, 148, 153, 259, 290, 443, 521, 769
MhlI GDGCHC 4 cut(s) 16, 112, 227, 588
MluCI AATT 3 cut(s) 43, 382, 425
MluI ACGCGT 1 cut(s) 358
MlyI GAGTC 1 cut(s) 640
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 8 cut(s) 27, 36, 123, 181, 205, 250, 286, 412
Mph1103I ATGCAT 1 cut(s) 502
MspR9I CCNGG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 2 cut(s) 303, 360
MwoI GCNNNNNNNGC 3 cut(s) 11, 188, 302
NcoI CCATGG 1 cut(s) 410
NdeII GATC 4 cut(s) 30, 36, 574, 616
NlaIII CATG 4 cut(s) 37, 348, 414, 775
NlaIV GGNNCC 4 cut(s) 109, 171, 226, 667
NsiI ATGCAT 1 cut(s) 502
PagI TCATGA 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 303
PfeI GAWTC 2 cut(s) 760, 779
PkrI GCNGC 2 cut(s) 195, 318
PleI GAGTC 1 cut(s) 640
PpsI GAGTC 1 cut(s) 640
Ppu21I YACGTR 1 cut(s) 624
Psp124BI GAGCTC 1 cut(s) 588
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 4 cut(s) 109, 171, 226, 667
PspPI GGNCC 1 cut(s) 548
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
SacI GAGCTC 1 cut(s) 588
SapI GCTCTTC 1 cut(s) 303
SatI GCNGC 2 cut(s) 194, 317
Sau3AI GATC 4 cut(s) 30, 36, 574, 616
Sau96I GGNCC 1 cut(s) 548
SchI GAGTC 1 cut(s) 640
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 4 cut(s) 16, 112, 227, 588
SfaNI GCATC 1 cut(s) 509
SinI GGWCC 1 cut(s) 548
SmlI CTYRAG 1 cut(s) 590
SmoI CTYRAG 1 cut(s) 590
Sse9I AATT 3 cut(s) 43, 382, 425
SsiI CCGC 1 cut(s) 294
SstI GAGCTC 1 cut(s) 588
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 410
TaaI ACNGT 1 cut(s) 706
TaiI ACGT 3 cut(s) 315, 613, 626
TaqI TCGA 1 cut(s) 186
TasI AATT 3 cut(s) 43, 382, 425
TfiI GAWTC 2 cut(s) 760, 779
TscAI CASTG 5 cut(s) 16, 77, 663, 709, 746
TseI GCWGC 2 cut(s) 193, 316
TspDTI ATGAA 3 cut(s) 246, 319, 450
TspRI CASTG 5 cut(s) 16, 77, 663, 709, 746
VpaK11BI GGWCC 1 cut(s) 548
XapI RAATTY 1 cut(s) 425
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.