Rh3CG339500

psbP domain-containing protein 6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0012358
Physical Location & Seq
Forward (+)
38047193 .. 38049444
2252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG339500.1

Sequence Viewer

Length: 795 bp
ATGGCGACCAGTGCTCCTCAGAGACCTCCGATCATGATCCCCAATTCAAAATACAAGTTGTGTTCGGGTCAGTGTAGTTCAAAACAGCATTGTCTTCCCACATTAGGAGCCCCTCAGGAGAAGAGTGTGATGGTGAAGAGAAGAGAGTTGATGTTGGGTTTGAGTATGGTTCCAGCCATTGCAATCGAGGCGCTGCCTTCAGAAGCCAGGGAGGTCGTTGTGGGCTCCTATCTCCCACCCTCAACTTCCGACCCTTCATTCGTTCTCTTCCAAGCCTCTGCTAAAGACACTCCCGCTCTTCGCGCAGGAAACGTGCAGCCTTACCAGTTCATCCTTCCCCCTACATGGAAACAGACACGTGTAGCAAACATATTATCTGGTAATTACTGCCAGCCAAAATGTGCAGAGCCATGGGTGGAGGTGAAATTTGAAGATGAAAAACAAGGAAAGCTTCAGGTTGTGGCTTCACCTTTGATACGCCTGACCAATAAGCCAAATGCATCTATTGAAGATATTGGCAACCCTGAGAAGCTGATTGCTTCTCTTGGACCTTTTGTAACTGGGAACACCTATGATCCTGATGAGCTCCTTGAGACCAAAGTTGAAAAACGTGGCGATCTCACGTACTACAACTATGTGCTGGAGACTCCATTTGCACTGACAGGTTCCCACAATCTTGCAAAGGCCACAGCTAAGGGGAACACTGTTGTCTTATTTGTGGTTAGCGCAAATGACAAGCAGTGGCAATCATCTCAGAAGATTCTAAAAGCCATGCTTGATTCTTTTCAGGTGTAG

Protein Analysis

264

Amino Acids

28.95

Weight (kDa)

8.7

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 107 - 264 2.2e-10 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012358)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56650
fragaria_vesca FvH4_1g28660 FvH4_1g28660 FvH4_1g28660
malus_domestica MD03G1200900.v1.1
prunus_persica Prupe.4G213200_v2.0.a1
pyrus_communis pycom03g15240
rosa_chinensis RchiOBHm_Chr3g0492661 RchiOBHm_Chr3g0492671
rosa_laevigata RLG00000022751
rosa_multiflora Rmu_sc0000831.1_g000013
rosa_roxburghii Rroxscaffold_6G00392150
rosa_rugosa Rorug03G0255600
rosa_samantha Rh3AG305700 Rh3AG305800 Rh3BG342100 Rh3CG339500 Rh3DG341400
rosa_wichuraiana Rw3G026920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 296
AccII CGCG 1 cut(s) 303
AciI CCGC 1 cut(s) 294
AclWI GGATC 2 cut(s) 31, 569
AcsI RAATTY 1 cut(s) 425
AcuI CTGAAG 2 cut(s) 183, 437
AcvI CACGTG 1 cut(s) 359
AfaI GTAC 1 cut(s) 626
AfiI CCNNNNNNNGG 2 cut(s) 104, 345
AflIII ACRYGT 2 cut(s) 356, 358
AgsI TTSAA 5 cut(s) 48, 81, 431, 509, 605
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 4 cut(s) 451, 532, 586, 692
AluI AGCT 4 cut(s) 451, 532, 586, 692
Alw21I GWGCWC 2 cut(s) 16, 588
Alw26I GTCTC 3 cut(s) 16, 587, 638
AlwI GGATC 2 cut(s) 31, 569
AoxI GGCC 1 cut(s) 684
ApeKI GCWGC 2 cut(s) 193, 316
ApoI RAATTY 1 cut(s) 425
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AspLEI GCGC 3 cut(s) 193, 305, 728
AspS9I GGNCC 1 cut(s) 548
AsuHPI GGTGA 3 cut(s) 145, 433, 459
AvaII GGWCC 1 cut(s) 548
AxyI CCTNAGG 1 cut(s) 114
BanII GRGCYC 3 cut(s) 112, 227, 588
BbrPI CACGTG 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 2 cut(s) 16, 588
BbvI GCAGC 2 cut(s) 180, 328
BccI CCATC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 208
BcoDI GTCTC 3 cut(s) 16, 587, 638
BfoI RGCGCY 1 cut(s) 194
BisI GCNGC 2 cut(s) 194, 317
BlsI GCNGC 2 cut(s) 195, 318
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 548
BmiI GGNNCC 4 cut(s) 109, 171, 226, 667
BmrFI CCNGG 1 cut(s) 208
BmrI ACTGGG 1 cut(s) 570
BmsI GCATC 1 cut(s) 509
BmuI ACTGGG 1 cut(s) 570
BpiI GAAGAC 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 662
Bpu10I CCTNAGC 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 611
BsaAI YACGTR 2 cut(s) 359, 624
BsaBI GATNNNNATC 1 cut(s) 35
BsaI GGTCTC 2 cut(s) 16, 587
BsaJI CCNNGG 2 cut(s) 207, 410
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 345
Bse1I ACTGG 3 cut(s) 9, 325, 565
Bse21I CCTNAGG 1 cut(s) 114
Bse3DI GCAATG 1 cut(s) 177
Bse8I GATNNNNATC 1 cut(s) 35
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 207, 410
BseGI GGATG 1 cut(s) 330
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 2 cut(s) 104, 345
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 4 cut(s) 32, 128, 516, 767
BseNI ACTGG 3 cut(s) 9, 325, 565
BseRI GAGGAG 1 cut(s) 6
BseXI GCAGC 2 cut(s) 180, 328
BsgI GTGCAG 2 cut(s) 335, 423
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 1 cut(s) 686
BsiHKAI GWGCWC 2 cut(s) 16, 588
BslI CCNNNNNNNGG 2 cut(s) 104, 345
BsmAI GTCTC 3 cut(s) 16, 587, 638
BsnI GGCC 1 cut(s) 686
Bso31I GGTCTC 2 cut(s) 16, 587
Bsp1286I GDGCHC 4 cut(s) 16, 112, 227, 588
Bsp143I GATC 4 cut(s) 30, 36, 574, 616
Bsp19I CCATGG 1 cut(s) 410
BspACI CCGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 686
BspCNI CTCAG 4 cut(s) 31, 127, 517, 766
BspFNI CGCG 1 cut(s) 303
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 4 cut(s) 109, 171, 226, 667
BspPI GGATC 2 cut(s) 31, 569
BspQI GCTCTTC 1 cut(s) 303
BspTNI GGTCTC 2 cut(s) 16, 587
BsrBI CCGCTC 1 cut(s) 296
BsrDI GCAATG 1 cut(s) 177
BsrI ACTGG 3 cut(s) 9, 325, 565
BssECI CCNNGG 2 cut(s) 207, 410
BssMI GATC 4 cut(s) 30, 36, 574, 616
BssT1I CCWWGG 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 706
Bst6I CTCTTC 5 cut(s) 116, 131, 136, 272, 303
BstBAI YACGTR 2 cut(s) 359, 624
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 5 cut(s) 18, 114, 525, 693, 753
BstDSI CCRYGG 1 cut(s) 410
BstF5I GGATG 1 cut(s) 330
BstFNI CGCG 1 cut(s) 303
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 3 cut(s) 193, 305, 728
BstKTI GATC 4 cut(s) 33, 39, 577, 619
BstMAI GTCTC 3 cut(s) 16, 587, 638
BstMBI GATC 4 cut(s) 30, 36, 574, 616
BstMWI GCNNNNNNNGC 3 cut(s) 11, 188, 302
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 180, 328
BstV2I GAAGAC 1 cut(s) 86
Bsu36I CCTNAGG 1 cut(s) 114
BsuRI GGCC 1 cut(s) 686
BtgI CCRYGG 1 cut(s) 410
BtsCI GGATG 1 cut(s) 330
BtsI GCAGTG 1 cut(s) 746
BtsIMutI CAGTG 5 cut(s) 16, 77, 656, 702, 746
Cac8I GCNNGC 1 cut(s) 392
CciI TCATGA 1 cut(s) 33
CfoI GCGC 3 cut(s) 193, 305, 728
Cfr13I GGNCC 1 cut(s) 548
Csp6I GTAC 1 cut(s) 625
CviAII CATG 4 cut(s) 34, 345, 411, 772
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 5 cut(s) 18, 114, 525, 693, 753
DpnI GATC 4 cut(s) 32, 38, 576, 618
DpnII GATC 4 cut(s) 30, 36, 574, 616
Eam1104I CTCTTC 5 cut(s) 116, 131, 136, 272, 303
EarI CTCTTC 5 cut(s) 116, 131, 136, 272, 303
Ecl136II GAGCTC 1 cut(s) 586
Eco130I CCWWGG 1 cut(s) 410
Eco24I GRGCYC 3 cut(s) 112, 227, 588
Eco31I GGTCTC 2 cut(s) 16, 587
Eco47I GGWCC 1 cut(s) 548
Eco53kI GAGCTC 1 cut(s) 586
Eco57I CTGAAG 2 cut(s) 183, 437
Eco72I CACGTG 1 cut(s) 359
Eco81I CCTNAGG 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 410
EcoT22I ATGCAT 1 cut(s) 502
EcoT38I GRGCYC 3 cut(s) 112, 227, 588
ErhI CCWWGG 1 cut(s) 410
FaeI CATG 4 cut(s) 37, 348, 414, 775
FaiI YATR 8 cut(s) 35, 167, 346, 371, 412, 573, 636, 773
FalI AAGNNNNNCTT 4 cut(s) 435, 467, 759, 791
FatI CATG 4 cut(s) 33, 344, 410, 771
FauI CCCGC 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 194, 317
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 3 cut(s) 112, 227, 588
Fsp4HI GCNGC 2 cut(s) 194, 317
GlaI GCGC 3 cut(s) 192, 304, 727
GluI GCNGC 2 cut(s) 194, 317
GsuI CTGGAG 1 cut(s) 662
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 1 cut(s) 686
HhaI GCGC 3 cut(s) 193, 305, 728
Hin1II CATG 4 cut(s) 37, 348, 414, 775
Hin6I GCGC 3 cut(s) 191, 303, 726
HinP1I GCGC 3 cut(s) 191, 303, 726
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 3 cut(s) 646, 760, 779
HphI GGTGA 3 cut(s) 145, 433, 459
Hpy188I TCNGA 5 cut(s) 21, 30, 202, 250, 756
Hpy188III TCNNGA 3 cut(s) 34, 116, 578
HpyAV CCTTC 3 cut(s) 207, 264, 344
HpyCH4III ACNGT 1 cut(s) 706
HpyCH4IV ACGT 4 cut(s) 312, 358, 610, 623
HpyCH4V TGCA 6 cut(s) 182, 316, 404, 500, 656, 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 188, 302
HpyF3I CTNAG 5 cut(s) 18, 114, 525, 693, 753
HpySE526I ACGT 4 cut(s) 312, 358, 610, 623
Hsp92II CATG 4 cut(s) 37, 348, 414, 775
HspAI GCGC 3 cut(s) 191, 303, 726
Kzo9I GATC 4 cut(s) 30, 36, 574, 616
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 4 cut(s) 19, 107, 230, 591
Lsp1109I GCAGC 2 cut(s) 180, 328
LweI GCATC 1 cut(s) 509
MaeII ACGT 4 cut(s) 312, 358, 610, 623
MaeIII GTNAC 1 cut(s) 556
MalI GATC 4 cut(s) 32, 38, 576, 618
MbiI CCGCTC 1 cut(s) 296
MboI GATC 4 cut(s) 30, 36, 574, 616
MboII GAAGA 9 cut(s) 86, 133, 148, 153, 259, 290, 443, 521, 769
MhlI GDGCHC 4 cut(s) 16, 112, 227, 588
MluCI AATT 3 cut(s) 43, 382, 425
MlyI GAGTC 1 cut(s) 640
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 8 cut(s) 27, 36, 123, 181, 205, 250, 286, 412
Mph1103I ATGCAT 1 cut(s) 502
MspR9I CCNGG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 3 cut(s) 11, 188, 302
NcoI CCATGG 1 cut(s) 410
NdeII GATC 4 cut(s) 30, 36, 574, 616
NlaIII CATG 4 cut(s) 37, 348, 414, 775
NlaIV GGNNCC 4 cut(s) 109, 171, 226, 667
NsiI ATGCAT 1 cut(s) 502
PagI TCATGA 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 303
PfeI GAWTC 2 cut(s) 760, 779
PkrI GCNGC 2 cut(s) 195, 318
PleI GAGTC 1 cut(s) 640
PmaCI CACGTG 1 cut(s) 359
PmlI CACGTG 1 cut(s) 359
PpsI GAGTC 1 cut(s) 640
Ppu21I YACGTR 2 cut(s) 359, 624
Psp124BI GAGCTC 1 cut(s) 588
Psp6I CCWGG 1 cut(s) 206
PspCI CACGTG 1 cut(s) 359
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 4 cut(s) 109, 171, 226, 667
PspPI GGNCC 1 cut(s) 548
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
SacI GAGCTC 1 cut(s) 588
SapI GCTCTTC 1 cut(s) 303
SatI GCNGC 2 cut(s) 194, 317
Sau3AI GATC 4 cut(s) 30, 36, 574, 616
Sau96I GGNCC 1 cut(s) 548
SchI GAGTC 1 cut(s) 640
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 4 cut(s) 16, 112, 227, 588
SfaNI GCATC 1 cut(s) 509
SinI GGWCC 1 cut(s) 548
SmlI CTYRAG 1 cut(s) 590
SmoI CTYRAG 1 cut(s) 590
Sse9I AATT 3 cut(s) 43, 382, 425
SsiI CCGC 1 cut(s) 294
SstI GAGCTC 1 cut(s) 588
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 410
TaaI ACNGT 1 cut(s) 706
TaiI ACGT 4 cut(s) 315, 361, 613, 626
TaqI TCGA 1 cut(s) 186
TasI AATT 3 cut(s) 43, 382, 425
TfiI GAWTC 2 cut(s) 760, 779
TscAI CASTG 5 cut(s) 16, 77, 663, 709, 746
TseI GCWGC 2 cut(s) 193, 316
TspDTI ATGAA 3 cut(s) 246, 319, 450
TspRI CASTG 5 cut(s) 16, 77, 663, 709, 746
VpaK11BI GGWCC 1 cut(s) 548
XapI RAATTY 1 cut(s) 425
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.