Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0012358

Physical Location & Seq

Genomic Coordinates Reverse (-)

11360162 .. 11367425

Gene Structure 7264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00392150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGATCCCCAATTCAAAATACAAGTTGTGTTCGGGTCAGTGTAGTTCAAAACAGCATTGTCTTCCCACATTAGGAGCCCCTCAGGAGAAGAGTATGATGGTGAAGAGAAGAGAGTTGATGTTGGGTTTGAGTATGGTTCCAGCCATTGCAATCGAGGCGCTGCCTTCAGAAGCCAGGGAGGTCGCTGTGGGCTCCTATCTCCCACCCTCAACTTCCGACCCTTCATTCGTTCTCTTCCAAGCCTCTGCTAAAGACACTCCCGCTCTTCGCGCAGGAAACGTGCAGCCTTACCAGTTCATCCTTCCCCCGACATGGAAACAGACACGCGTAGCAAACATATTATCTGGTAATTACTGCCAGCCAAAATGTGCAGAGCCATGGGTGGAGGTGAAATTTGAAGATGAAAAACAAGGAAAGCTTCAGGTTGTGGCTTCACCTTTGATACGCCTGACCAATAAGCCAAACGCATCTATTGAAGATATTGGCAACCCTGAGAAGCTGATTGCTTCTCTTGGACCTTTTGTAACTGGGAACACCTATGATCCTGATGAGCTCCTTGAGACCAAAGTTGAAAAACGTGGCGATCTCACGTACTACAACTATGTGCTGGAGACTCCATTTGCACTGACAGGTTCCCACAATCTTGCAAAGGCCACAGCTAAGGGAAACACTGTGGTCTTATTTGTGGTTAGCGCAAATGACAAGCAGTGGCAATCATCTCAGAAGATTCTAAAAGCCATGCTTGATTCTTTTCAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0031976 GO:0031977 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

253

Amino Acids

27.81

Weight (kDa)

8.49

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbP	PF01789	96 - 253	1.8e-10	PsbP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56650
fragaria_vesca	FvH4_1g28660 FvH4_1g28660 FvH4_1g28660
malus_domestica	MD03G1200900.v1.1
prunus_persica	Prupe.4G213200_v2.0.a1
pyrus_communis	pycom03g15240
rosa_chinensis	RchiOBHm_Chr3g0492661 RchiOBHm_Chr3g0492671
rosa_laevigata	RLG00000022751
rosa_multiflora	Rmu_sc0000831.1_g000013
rosa_roxburghii	Rroxscaffold_6G00392150
rosa_rugosa	Rorug03G0255600
rosa_samantha	Rh3AG305700 Rh3AG305800 Rh3BG342100 Rh3CG339500 Rh3DG341400
rosa_wichuraiana	Rw3G026920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	263
AccII	CGCG	2 cut(s)	270, 327
AciI	CCGC	1 cut(s)	261
AclWI	GGATC	1 cut(s)	536
AcsI	RAATTY	1 cut(s)	392
AcuI	CTGAAG	2 cut(s)	150, 404
AfaI	GTAC	1 cut(s)	593
AfiI	CCNNNNNNNGG	2 cut(s)	71, 312
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	5 cut(s)	15, 48, 398, 476, 572
AjnI	CCWGG	1 cut(s)	173
AluBI	AGCT	4 cut(s)	418, 499, 553, 659
AluI	AGCT	4 cut(s)	418, 499, 553, 659
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	2 cut(s)	554, 605
AlwI	GGATC	1 cut(s)	536
AoxI	GGCC	1 cut(s)	651
ApeKI	GCWGC	2 cut(s)	160, 283
ApoI	RAATTY	1 cut(s)	392
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
AspLEI	GCGC	3 cut(s)	160, 272, 695
AspS9I	GGNCC	1 cut(s)	515
AsuHPI	GGTGA	3 cut(s)	112, 400, 426
AvaII	GGWCC	1 cut(s)	515
AxyI	CCTNAGG	1 cut(s)	81
BanII	GRGCYC	3 cut(s)	79, 194, 555
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	147, 295
BccI	CCATC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	175
BcoDI	GTCTC	2 cut(s)	554, 605
BfoI	RGCGCY	1 cut(s)	161
BisI	GCNGC	2 cut(s)	161, 284
BlsI	GCNGC	2 cut(s)	162, 285
Bme1390I	CCNGG	1 cut(s)	175
Bme18I	GGWCC	1 cut(s)	515
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	4 cut(s)	76, 138, 193, 634
BmrFI	CCNGG	1 cut(s)	175
BmrI	ACTGGG	1 cut(s)	537
BmsI	GCATC	1 cut(s)	476
BmuI	ACTGGG	1 cut(s)	537
BpiI	GAAGAC	1 cut(s)	53
BpmI	CTGGAG	1 cut(s)	629
Bpu10I	CCTNAGC	1 cut(s)	660
BpuEI	CTTGAG	1 cut(s)	578
BsaAI	YACGTR	1 cut(s)	591
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	2 cut(s)	174, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 312
Bse1I	ACTGG	2 cut(s)	292, 532
Bse21I	CCTNAGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	174, 377
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	2 cut(s)	71, 312
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	3 cut(s)	95, 483, 734
BseNI	ACTGG	2 cut(s)	292, 532
BseXI	GCAGC	2 cut(s)	147, 295
BsgI	GTGCAG	2 cut(s)	302, 390
Bsh1236I	CGCG	2 cut(s)	270, 327
BshFI	GGCC	1 cut(s)	653
BsiHKAI	GWGCWC	1 cut(s)	555
BslI	CCNNNNNNNGG	2 cut(s)	71, 312
BsmAI	GTCTC	2 cut(s)	554, 605
BsnI	GGCC	1 cut(s)	653
Bso31I	GGTCTC	1 cut(s)	554
Bsp1286I	GDGCHC	3 cut(s)	79, 194, 555
Bsp143I	GATC	3 cut(s)	3, 541, 583
Bsp19I	CCATGG	1 cut(s)	377
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	1 cut(s)	653
BspCNI	CTCAG	3 cut(s)	94, 484, 733
BspFNI	CGCG	2 cut(s)	270, 327
BspLI	GGNNCC	4 cut(s)	76, 138, 193, 634
BspPI	GGATC	1 cut(s)	536
BspQI	GCTCTTC	1 cut(s)	270
BspTNI	GGTCTC	1 cut(s)	554
BsrBI	CCGCTC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	2 cut(s)	292, 532
BssECI	CCNNGG	2 cut(s)	174, 377
BssMI	GATC	3 cut(s)	3, 541, 583
BssT1I	CCWWGG	1 cut(s)	377
Bst2UI	CCWGG	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	673
Bst6I	CTCTTC	5 cut(s)	83, 98, 103, 239, 270
BstBAI	YACGTR	1 cut(s)	591
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	4 cut(s)	81, 492, 660, 720
BstDSI	CCRYGG	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	297
BstFNI	CGCG	2 cut(s)	270, 327
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	3 cut(s)	160, 272, 695
BstKTI	GATC	3 cut(s)	6, 544, 586
BstMAI	GTCTC	2 cut(s)	554, 605
BstMBI	GATC	3 cut(s)	3, 541, 583
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 269
BstNI	CCWGG	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	173
BstUI	CGCG	2 cut(s)	270, 327
BstV1I	GCAGC	2 cut(s)	147, 295
BstV2I	GAAGAC	1 cut(s)	53
Bsu36I	CCTNAGG	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	653
BtgI	CCRYGG	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	297
BtsI	GCAGTG	1 cut(s)	713
BtsIMutI	CAGTG	4 cut(s)	44, 623, 669, 713
Cac8I	GCNNGC	1 cut(s)	359
CfoI	GCGC	3 cut(s)	160, 272, 695
Cfr13I	GGNCC	1 cut(s)	515
Csp6I	GTAC	1 cut(s)	592
CviAII	CATG	3 cut(s)	312, 378, 739
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	4 cut(s)	81, 492, 660, 720
DpnI	GATC	3 cut(s)	5, 543, 585
DpnII	GATC	3 cut(s)	3, 541, 583
Eam1104I	CTCTTC	5 cut(s)	83, 98, 103, 239, 270
EarI	CTCTTC	5 cut(s)	83, 98, 103, 239, 270
Ecl136II	GAGCTC	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	377
Eco24I	GRGCYC	3 cut(s)	79, 194, 555
Eco31I	GGTCTC	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	515
Eco53kI	GAGCTC	1 cut(s)	553
Eco57I	CTGAAG	2 cut(s)	150, 404
Eco81I	CCTNAGG	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	377
EcoT38I	GRGCYC	3 cut(s)	79, 194, 555
ErhI	CCWWGG	1 cut(s)	377
FaeI	CATG	3 cut(s)	315, 381, 742
FaiI	YATR	8 cut(s)	95, 134, 313, 338, 379, 540, 603, 740
FalI	AAGNNNNNCTT	4 cut(s)	402, 434, 726, 758
FatI	CATG	3 cut(s)	311, 377, 738
FauI	CCCGC	1 cut(s)	268
Fnu4HI	GCNGC	2 cut(s)	161, 284
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	3 cut(s)	79, 194, 555
Fsp4HI	GCNGC	2 cut(s)	161, 284
GlaI	GCGC	3 cut(s)	159, 271, 694
GluI	GCNGC	2 cut(s)	161, 284
GsuI	CTGGAG	1 cut(s)	629
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	653
HhaI	GCGC	3 cut(s)	160, 272, 695
Hin1II	CATG	3 cut(s)	315, 381, 742
Hin6I	GCGC	3 cut(s)	158, 270, 693
HinP1I	GCGC	3 cut(s)	158, 270, 693
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	3 cut(s)	613, 727, 746
HphI	GGTGA	3 cut(s)	112, 400, 426
Hpy188I	TCNGA	3 cut(s)	169, 217, 723
Hpy188III	TCNNGA	2 cut(s)	83, 545
HpyAV	CCTTC	3 cut(s)	174, 231, 311
HpyCH4III	ACNGT	1 cut(s)	673
HpyCH4IV	ACGT	3 cut(s)	279, 577, 590
HpyCH4V	TGCA	5 cut(s)	149, 283, 371, 623, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 269
HpyF3I	CTNAG	4 cut(s)	81, 492, 660, 720
HpySE526I	ACGT	3 cut(s)	279, 577, 590
Hsp92II	CATG	3 cut(s)	315, 381, 742
HspAI	GCGC	3 cut(s)	158, 270, 693
Kzo9I	GATC	3 cut(s)	3, 541, 583
LguI	GCTCTTC	1 cut(s)	270
LmnI	GCTCC	3 cut(s)	74, 197, 558
Lsp1109I	GCAGC	2 cut(s)	147, 295
LweI	GCATC	1 cut(s)	476
MaeII	ACGT	3 cut(s)	279, 577, 590
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	3 cut(s)	5, 543, 585
MbiI	CCGCTC	1 cut(s)	263
MboI	GATC	3 cut(s)	3, 541, 583
MboII	GAAGA	9 cut(s)	53, 100, 115, 120, 226, 257, 410, 488, 736
MhlI	GDGCHC	3 cut(s)	79, 194, 555
MluCI	AATT	3 cut(s)	10, 349, 392
MluI	ACGCGT	1 cut(s)	325
MlyI	GAGTC	1 cut(s)	607
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	6 cut(s)	90, 148, 172, 217, 253, 379
MspR9I	CCNGG	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	175
MvnI	CGCG	2 cut(s)	270, 327
MwoI	GCNNNNNNNGC	2 cut(s)	155, 269
NcoI	CCATGG	1 cut(s)	377
NdeII	GATC	3 cut(s)	3, 541, 583
NlaIII	CATG	3 cut(s)	315, 381, 742
NlaIV	GGNNCC	4 cut(s)	76, 138, 193, 634
PciSI	GCTCTTC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	727, 746
PkrI	GCNGC	2 cut(s)	162, 285
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
Ppu21I	YACGTR	1 cut(s)	591
Psp124BI	GAGCTC	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	173
PspN4I	GGNNCC	4 cut(s)	76, 138, 193, 634
PspPI	GGNCC	1 cut(s)	515
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
SacI	GAGCTC	1 cut(s)	555
SapI	GCTCTTC	1 cut(s)	270
SatI	GCNGC	2 cut(s)	161, 284
Sau3AI	GATC	3 cut(s)	3, 541, 583
Sau96I	GGNCC	1 cut(s)	515
SchI	GAGTC	1 cut(s)	607
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	3 cut(s)	79, 194, 555
SfaNI	GCATC	1 cut(s)	476
SinI	GGWCC	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	3 cut(s)	10, 349, 392
SsiI	CCGC	1 cut(s)	261
SstI	GAGCTC	1 cut(s)	555
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	377
TaaI	ACNGT	1 cut(s)	673
TaiI	ACGT	3 cut(s)	282, 580, 593
TaqI	TCGA	1 cut(s)	153
TasI	AATT	3 cut(s)	10, 349, 392
TfiI	GAWTC	2 cut(s)	727, 746
TscAI	CASTG	4 cut(s)	44, 630, 676, 713
TseI	GCWGC	2 cut(s)	160, 283
TspDTI	ATGAA	3 cut(s)	213, 286, 417
TspRI	CASTG	4 cut(s)	44, 630, 676, 713
VpaK11BI	GGWCC	1 cut(s)	515
XapI	RAATTY	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.