Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0012358

Physical Location & Seq

Genomic Coordinates Reverse (-)

16547967 .. 16550288

Gene Structure 2322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGATATCGGATAAGGGCGGGGAGGGGCCAGCGCCTGCGGCTACAATATTATACGTATCATATCATCGTTTCCTTCTTTCTCCTCTTAAAAATATGGCTACCGCTCCTTTAACTTCTCCAATACCTTCCTCTCTCGCCTCCTCCAAATGCCAACCGCCGCCACTTCTCTCGCCTTCTCCTCCGAATTCACTTCCATTACTTCCCAGTCAAAAACGAAGGGAGTTGCTGCTGAAAGCAGGGCTTGGTCTGCTTCCTCTGGCTCTGGTTGAAACAATACTGAAAGTGCCTTCCGCAGAAGCTAAGGATGCGGTGGTGGGCTCCTATCTCCCGCCCTCACCTTCCGATTCTTCCTTCGTCGTCTTCAAAGCCACTCCTAAAGACACTCCCGCCCTTCGCGCTGGAAATGTGGAGCCCTACCAGTTCATCATTCCCCCAACCTGGAAACAGATGCGCGTAGCAAACATTTTATCTGGTAATTACTGCCAACCAAAATGCGCAGAGCCGTGGGTGGAGGTAAAATTTGAAGACGAAAAACAGGGAAAACTTCAGGTTGTGGCTTCACCTTTGATACGCCTGACCAATAAACCGAACGCAACAATTGAAGACATTGGAAACCCTGAGAAGGTAATTGCTTCTCTTGGCCCTTTCGTCACTGGAAACACATACGATCCAGATGAGCTCCTTGAGACTACAGTTGAGAAGCGTGGTGATTTGACGTACTACAAGTACGCGCTCGAGACCCCGTTTGCTCTCACAGGTTCTCACAATCTTGCAGTGGCAACAGCAAAGGGAAACACTGTTGTATTATTTGTGGTAAGTGCAAGTGAGAAACAATGGCAAGCATCTCAGAAGACGCTAAAAGCCATGCTCGATTCATTTCAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0031976 GO:0031977 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

296

Amino Acids

31.84

Weight (kDa)

8.6

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012358)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56650
fragaria_vesca	FvH4_1g28660 FvH4_1g28660 FvH4_1g28660
malus_domestica	MD03G1200900.v1.1
prunus_persica	Prupe.4G213200_v2.0.a1
pyrus_communis	pycom03g15240
rosa_chinensis	RchiOBHm_Chr3g0492661 RchiOBHm_Chr3g0492671
rosa_laevigata	RLG00000022751
rosa_multiflora	Rmu_sc0000831.1_g000013
rosa_roxburghii	Rroxscaffold_6G00392150
rosa_rugosa	Rorug03G0255600
rosa_samantha	Rh3AG305700 Rh3AG305800 Rh3BG342100 Rh3CG339500 Rh3DG341400
rosa_wichuraiana	Rw3G026920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	496
AccBSI	CCGCTC	1 cut(s)	104
AccII	CGCG	3 cut(s)	396, 453, 731
AciI	CCGC	9 cut(s)	18, 38, 102, 155, 158, 291, 308, 329, 387
AclWI	GGATC	1 cut(s)	662
AcsI	RAATTY	2 cut(s)	184, 518
AcuI	CTGAAG	1 cut(s)	530
AfaI	GTAC	2 cut(s)	719, 728
AfiI	CCNNNNNNNGG	2 cut(s)	438, 622
AgsI	TTSAA	5 cut(s)	269, 364, 524, 602, 881
AjnI	CCWGG	1 cut(s)	437
AluBI	AGCT	2 cut(s)	299, 679
AluI	AGCT	2 cut(s)	299, 679
Alw21I	GWGCWC	1 cut(s)	681
Alw26I	GTCTC	2 cut(s)	680, 731
AlwI	GGATC	1 cut(s)	662
AlwNI	CAGNNNCTG	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	734
AoxI	GGCC	2 cut(s)	26, 640
ApeKI	GCWGC	1 cut(s)	226
ApoI	RAATTY	2 cut(s)	184, 518
AspLEI	GCGC	5 cut(s)	34, 398, 453, 497, 733
AspS9I	GGNCC	2 cut(s)	26, 641
AsuHPI	GGTGA	3 cut(s)	327, 552, 719
AvaI	CYCGRG	1 cut(s)	734
BanII	GRGCYC	3 cut(s)	320, 414, 681
BbsI	GAAGAC	4 cut(s)	352, 531, 609, 857
Bbv12I	GWGCWC	1 cut(s)	681
BbvI	GCAGC	1 cut(s)	213
BceAI	ACGGC	1 cut(s)	487
BciT130I	CCWGG	1 cut(s)	439
BcoDI	GTCTC	2 cut(s)	680, 731
BfmI	CTRYAG	1 cut(s)	690
BfoI	RGCGCY	1 cut(s)	35
BisI	GCNGC	3 cut(s)	39, 158, 227
BlsI	GCNGC	3 cut(s)	40, 159, 228
Bme1390I	CCNGG	1 cut(s)	439
BmeT110I	CYCGRG	1 cut(s)	734
BmgT120I	GGNCC	2 cut(s)	26, 641
BmiI	GGNNCC	3 cut(s)	27, 319, 411
BmrFI	CCNGG	1 cut(s)	439
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	295, 438, 851
BmuI	ACTGGG	1 cut(s)	198
BpiI	GAAGAC	4 cut(s)	352, 531, 609, 857
Bpu10I	CCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	704
BsaAI	YACGTR	1 cut(s)	55
BsaI	GGTCTC	1 cut(s)	731
BsaJI	CCNNGG	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	2 cut(s)	438, 622
Bse1I	ACTGG	3 cut(s)	204, 418, 658
BseBI	CCWGG	1 cut(s)	439
BseDI	CCNNGG	1 cut(s)	503
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	438, 622
BseMII	CTCAG	2 cut(s)	609, 860
BseNI	ACTGG	3 cut(s)	204, 418, 658
BseRI	GAGGAG	3 cut(s)	72, 130, 168
BseXI	GCAGC	1 cut(s)	213
Bsh1236I	CGCG	3 cut(s)	396, 453, 731
BshFI	GGCC	2 cut(s)	28, 642
BsiHKAI	GWGCWC	1 cut(s)	681
BsiHKCI	CYCGRG	1 cut(s)	734
BslI	CCNNNNNNNGG	2 cut(s)	438, 622
BsmAI	GTCTC	2 cut(s)	680, 731
BsnI	GGCC	2 cut(s)	28, 642
Bso31I	GGTCTC	1 cut(s)	731
BsoBI	CYCGRG	1 cut(s)	734
Bsp1286I	GDGCHC	3 cut(s)	320, 414, 681
Bsp143I	GATC	1 cut(s)	667
BspACI	CCGC	9 cut(s)	18, 38, 102, 155, 158, 291, 308, 329, 387
BspANI	GGCC	2 cut(s)	28, 642
BspCNI	CTCAG	2 cut(s)	610, 859
BspFNI	CGCG	3 cut(s)	396, 453, 731
BspLI	GGNNCC	3 cut(s)	27, 319, 411
BspPI	GGATC	1 cut(s)	662
BspTNI	GGTCTC	1 cut(s)	731
BsrBI	CCGCTC	1 cut(s)	104
BsrI	ACTGG	3 cut(s)	204, 418, 658
BssECI	CCNNGG	1 cut(s)	503
BssMI	GATC	1 cut(s)	667
Bst2UI	CCWGG	1 cut(s)	439
Bst4CI	ACNGT	2 cut(s)	694, 799
BstBAI	YACGTR	1 cut(s)	55
BstC8I	GCNNGC	3 cut(s)	30, 36, 840
BstDEI	CTNAG	3 cut(s)	300, 618, 846
BstDSI	CCRYGG	1 cut(s)	503
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	3 cut(s)	396, 453, 731
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	5 cut(s)	34, 398, 453, 497, 733
BstKTI	GATC	1 cut(s)	670
BstMAI	GTCTC	2 cut(s)	680, 731
BstMBI	GATC	1 cut(s)	667
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 247, 305, 395
BstNI	CCWGG	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	437
BstSFI	CTRYAG	1 cut(s)	690
BstSNI	TACGTA	1 cut(s)	55
BstUI	CGCG	3 cut(s)	396, 453, 731
BstV1I	GCAGC	1 cut(s)	213
BstV2I	GAAGAC	4 cut(s)	352, 531, 609, 857
BsuRI	GGCC	2 cut(s)	28, 642
BtgI	CCRYGG	1 cut(s)	503
BtsCI	GGATG	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	3 cut(s)	651, 780, 795
Cac8I	GCNNGC	3 cut(s)	30, 36, 840
CaiI	CAGNNNCTG	1 cut(s)	35
CfoI	GCGC	5 cut(s)	34, 398, 453, 497, 733
Cfr13I	GGNCC	2 cut(s)	26, 641
CseI	GACGC	1 cut(s)	862
Csp6I	GTAC	2 cut(s)	718, 727
CviAII	CATG	1 cut(s)	865
CviQI	GTAC	2 cut(s)	718, 727
DdeI	CTNAG	3 cut(s)	300, 618, 846
DpnI	GATC	1 cut(s)	669
DpnII	GATC	1 cut(s)	667
Ecl136II	GAGCTC	1 cut(s)	679
Eco105I	TACGTA	1 cut(s)	55
Eco24I	GRGCYC	3 cut(s)	320, 414, 681
Eco31I	GGTCTC	1 cut(s)	731
Eco32I	GATATC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	530
Eco88I	CYCGRG	1 cut(s)	734
EcoICRI	GAGCTC	1 cut(s)	679
EcoRI	GAATTC	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	437
EcoRV	GATATC	1 cut(s)	6
EcoT38I	GRGCYC	3 cut(s)	320, 414, 681
FaeI	CATG	1 cut(s)	868
FaiI	YATR	5 cut(s)	52, 61, 95, 664, 866
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FatI	CATG	1 cut(s)	864
FauI	CCCGC	3 cut(s)	11, 336, 394
Fnu4HI	GCNGC	3 cut(s)	39, 158, 227
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	3 cut(s)	320, 414, 681
Fsp4HI	GCNGC	3 cut(s)	39, 158, 227
FspI	TGCGCA	1 cut(s)	496
GlaI	GCGC	5 cut(s)	33, 397, 452, 496, 732
GluI	GCNGC	3 cut(s)	39, 158, 227
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	28, 642
HgaI	GACGC	1 cut(s)	862
HhaI	GCGC	5 cut(s)	34, 398, 453, 497, 733
Hin1II	CATG	1 cut(s)	868
Hin6I	GCGC	5 cut(s)	32, 396, 451, 495, 731
HinP1I	GCGC	5 cut(s)	32, 396, 451, 495, 731
HinfI	GANTC	2 cut(s)	344, 872
HphI	GGTGA	3 cut(s)	327, 552, 719
Hpy188I	TCNGA	4 cut(s)	10, 183, 343, 849
Hpy188III	TCNNGA	2 cut(s)	671, 736
Hpy99I	CGWCG	1 cut(s)	359
HpyAV	CCTTC	9 cut(s)	83, 135, 183, 210, 297, 348, 361, 401, 616
HpyCH4III	ACNGT	2 cut(s)	694, 799
HpyCH4IV	ACGT	2 cut(s)	54, 716
HpyCH4V	TGCA	2 cut(s)	773, 821
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 247, 305, 395
HpyF3I	CTNAG	3 cut(s)	300, 618, 846
HpySE526I	ACGT	2 cut(s)	54, 716
Hsp92II	CATG	1 cut(s)	868
HspAI	GCGC	5 cut(s)	32, 396, 451, 495, 731
Kzo9I	GATC	1 cut(s)	667
LmnI	GCTCC	4 cut(s)	109, 323, 409, 684
Lsp1109I	GCAGC	1 cut(s)	213
LweI	GCATC	3 cut(s)	295, 438, 851
MaeII	ACGT	2 cut(s)	54, 716
MaeIII	GTNAC	1 cut(s)	649
MalI	GATC	1 cut(s)	669
MbiI	CCGCTC	1 cut(s)	104
MboI	GATC	1 cut(s)	667
MboII	GAAGA	5 cut(s)	339, 352, 536, 614, 862
MfeI	CAATTG	1 cut(s)	597
MhlI	GDGCHC	3 cut(s)	320, 414, 681
MluCI	AATT	5 cut(s)	184, 475, 518, 597, 627
MnlI	CCTC	9 cut(s)	16, 93, 139, 148, 151, 189, 264, 343, 505
MseI	TTAA	2 cut(s)	87, 110
MspR9I	CCNGG	1 cut(s)	439
MunI	CAATTG	1 cut(s)	597
MvaI	CCWGG	1 cut(s)	439
MvnI	CGCG	3 cut(s)	396, 453, 731
MwoI	GCNNNNNNNGC	4 cut(s)	38, 247, 305, 395
NdeII	GATC	1 cut(s)	667
NlaIII	CATG	1 cut(s)	868
NlaIV	GGNNCC	3 cut(s)	27, 319, 411
NmuCI	GTSAC	1 cut(s)	649
NsbI	TGCGCA	1 cut(s)	496
PaeR7I	CTCGAG	1 cut(s)	734
PfeI	GAWTC	2 cut(s)	344, 872
PkrI	GCNGC	3 cut(s)	40, 159, 228
Ppu21I	YACGTR	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	681
Psp6I	CCWGG	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	437
PspN4I	GGNNCC	3 cut(s)	27, 319, 411
PspPI	GGNCC	2 cut(s)	26, 641
PstNI	CAGNNNCTG	1 cut(s)	35
RsaI	GTAC	2 cut(s)	719, 728
RsaNI	GTAC	2 cut(s)	718, 727
SacI	GAGCTC	1 cut(s)	681
SaqAI	TTAA	2 cut(s)	87, 110
SatI	GCNGC	3 cut(s)	39, 158, 227
Sau3AI	GATC	1 cut(s)	667
Sau96I	GGNCC	2 cut(s)	26, 641
ScrFI	CCNGG	1 cut(s)	439
SduI	GDGCHC	3 cut(s)	320, 414, 681
SfaNI	GCATC	3 cut(s)	295, 438, 851
SfcI	CTRYAG	1 cut(s)	690
Sfr274I	CTCGAG	1 cut(s)	734
SlaI	CTCGAG	1 cut(s)	734
SmlI	CTYRAG	2 cut(s)	683, 734
SmoI	CTYRAG	2 cut(s)	683, 734
SnaBI	TACGTA	1 cut(s)	55
Sse9I	AATT	5 cut(s)	184, 475, 518, 597, 627
SsiI	CCGC	9 cut(s)	18, 38, 102, 155, 158, 291, 308, 329, 387
SspI	AATATT	1 cut(s)	48
SstI	GAGCTC	1 cut(s)	681
StyD4I	CCNGG	1 cut(s)	437
TaaI	ACNGT	2 cut(s)	694, 799
TaiI	ACGT	2 cut(s)	57, 719
TaqI	TCGA	2 cut(s)	735, 870
TasI	AATT	5 cut(s)	184, 475, 518, 597, 627
TauI	GCSGC	2 cut(s)	41, 160
TfiI	GAWTC	2 cut(s)	344, 872
Tru1I	TTAA	2 cut(s)	87, 110
Tru9I	TTAA	2 cut(s)	87, 110
TscAI	CASTG	3 cut(s)	658, 780, 802
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	2 cut(s)	412, 864
TspRI	CASTG	3 cut(s)	658, 780, 802
XapI	RAATTY	2 cut(s)	184, 518
XhoI	CTCGAG	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.