AT3G56891

Heavy metal-associated isoprenylated plant protein 26-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011421
Physical Location & Seq
Reverse (-)
21064088 .. 21064986
899 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56891.1

Sequence Viewer

Length: 501 bp
ATGTTTGATTGGATACATGGAAACTCTCGATTACCAATCGCTTTATCTATTGTGGAGCTTTTGGTAGACATGGATTGTAAAGGATGTGAAAAGAAGGTTCGAAGAGCCATTTCTAAACTCGATGGAGTGGACACGGTAGAGATAGACGTGGATCGACAAAAAGTGACAGTCACGGGATACGTTGATCGAGAAGAGGTTCTAAAGATGGTGAAACGAACGGGACGAACAGCGGAATATTGGCCATTTCCTTACAATGGATATTATGGTGATTACTATACATATCCTTCTCAACATTTGGAACAATCGGATCAGAAGATATATCAGACAATCTCATATAGTGGAAAGTATGATTTCTATGACGTTGACGACTTTCAAAATACAAACAACTCTACTATCAATGGTTATTATCCTAGTTCATCCCAAAAAGTTCAACCTAATATCGATGAAAATGCTCTTCATCTTTTTAGCGATGATAATGCTCATGCTTGTACTATCATGTGA

Protein Analysis

166

Amino Acids

19.23

Weight (kDa)

4.89

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 22 - 75 8.1e-16 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011421)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56891 AT3G56891
fragaria_vesca FvH4_2g26780
malus_domestica MD03G1023000.v1.1
prunus_persica Prupe.7G025000_v2.0.a1
pyrus_communis pycom03g01930
rosa_chinensis RchiOBHm_Chr3g0495281
rosa_laevigata RLG00000022631
rosa_multiflora Rmu_co8042714.1_g000001 Rmu_sc0002433.1_g000005 Rmu_sc0002433.1_g000007
rosa_roxburghii Rroxscaffold_6G00390640
rosa_rugosa Rorug03G0272000 Rorug03G0272100 Rorug03G0272200
rosa_samantha Rh3AG320400 Rh3BG355200 Rh3CG352200 Rh3DG354300
rosa_wichuraiana Rw3G027970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 66
AciI CCGC 1 cut(s) 230
AclWI GGATC 2 cut(s) 159, 315
AcoI YGGCCR 1 cut(s) 239
AfaI GTAC 1 cut(s) 490
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 2 cut(s) 374, 431
AjiI CACGTC 1 cut(s) 148
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
AlwI GGATC 2 cut(s) 159, 315
AoxI GGCC 1 cut(s) 239
Asp700I GAANNNNTTC 1 cut(s) 195
AsuHPI GGTGA 2 cut(s) 220, 278
AsuII TTCGAA 1 cut(s) 100
BalI TGGCCA 1 cut(s) 241
BccI CCATC 2 cut(s) 116, 199
BcgI CGANNNNNNTGC 4 cut(s) 431, 458, 465, 492
BciVI GTATCC 2 cut(s) 6, 170
BfaI CTAG 1 cut(s) 411
BfuI GTATCC 2 cut(s) 6, 170
BmgBI CACGTC 1 cut(s) 148
Bpu14I TTCGAA 1 cut(s) 100
Bsa29I ATCGAT 1 cut(s) 441
Bsc4I CCNNNNNNNGG 1 cut(s) 254
BseCI ATCGAT 1 cut(s) 441
BseGI GGATG 2 cut(s) 89, 416
BseLI CCNNNNNNNGG 1 cut(s) 254
BshFI GGCC 1 cut(s) 241
BshVI ATCGAT 1 cut(s) 441
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 1 cut(s) 241
Bsp119I TTCGAA 1 cut(s) 100
Bsp143I GATC 3 cut(s) 151, 184, 307
BspACI CCGC 1 cut(s) 230
BspANI GGCC 1 cut(s) 241
BspDI ATCGAT 1 cut(s) 441
BspPI GGATC 2 cut(s) 159, 315
BspQI GCTCTTC 2 cut(s) 97, 459
BspT104I TTCGAA 1 cut(s) 100
BssMI GATC 3 cut(s) 151, 184, 307
Bst4CI ACNGT 2 cut(s) 136, 169
Bst6I CTCTTC 3 cut(s) 97, 186, 459
BstBI TTCGAA 1 cut(s) 100
BstF5I GGATG 2 cut(s) 89, 416
BstKTI GATC 3 cut(s) 154, 187, 310
BstMBI GATC 3 cut(s) 151, 184, 307
Bsu15I ATCGAT 1 cut(s) 441
BsuI GTATCC 2 cut(s) 6, 170
BsuRI GGCC 1 cut(s) 241
BsuTUI ATCGAT 1 cut(s) 441
BtgZI GCGATG 1 cut(s) 483
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 2 cut(s) 89, 416
ClaI ATCGAT 1 cut(s) 441
Csp6I GTAC 1 cut(s) 489
CviAII CATG 4 cut(s) 17, 70, 482, 496
CviJI RGCY 3 cut(s) 58, 107, 241
CviKI_1 RGCY 3 cut(s) 58, 107, 241
CviQI GTAC 1 cut(s) 489
DpnI GATC 3 cut(s) 153, 186, 309
DpnII GATC 3 cut(s) 151, 184, 307
EaeI YGGCCR 1 cut(s) 239
Eam1104I CTCTTC 3 cut(s) 97, 186, 459
EarI CTCTTC 3 cut(s) 97, 186, 459
FaeI CATG 4 cut(s) 20, 73, 485, 499
FaqI GGGAC 1 cut(s) 234
FatI CATG 4 cut(s) 16, 69, 481, 495
FblI GTMKAC 1 cut(s) 66
FokI GGATG 2 cut(s) 96, 403
FspBI CTAG 1 cut(s) 411
HaeIII GGCC 1 cut(s) 241
Hin1II CATG 4 cut(s) 20, 73, 485, 499
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HphI GGTGA 2 cut(s) 220, 278
Hpy166II GTNNAC 3 cut(s) 67, 130, 364
Hpy188I TCNGA 3 cut(s) 307, 312, 324
Hpy188III TCNNGA 2 cut(s) 27, 188
Hpy8I GTNNAC 3 cut(s) 67, 130, 364
HpyAV CCTTC 2 cut(s) 88, 294
HpyCH4III ACNGT 2 cut(s) 136, 169
HpyCH4IV ACGT 3 cut(s) 147, 180, 360
HpySE526I ACGT 3 cut(s) 147, 180, 360
Hsp92II CATG 4 cut(s) 20, 73, 485, 499
Kzo9I GATC 3 cut(s) 151, 184, 307
LguI GCTCTTC 2 cut(s) 97, 459
LmnI GCTCC 1 cut(s) 55
MaeI CTAG 1 cut(s) 411
MaeII ACGT 3 cut(s) 147, 180, 360
MaeIII GTNAC 2 cut(s) 163, 169
MalI GATC 3 cut(s) 153, 186, 309
MboI GATC 3 cut(s) 151, 184, 307
MboII GAAGA 4 cut(s) 114, 203, 325, 446
MlsI TGGCCA 1 cut(s) 241
MluNI TGGCCA 1 cut(s) 241
MnlI CCTC 1 cut(s) 187
Mox20I TGGCCA 1 cut(s) 241
MroXI GAANNNNTTC 1 cut(s) 195
MscI TGGCCA 1 cut(s) 241
Msp20I TGGCCA 1 cut(s) 241
MspA1I CMGCKG 1 cut(s) 230
NdeII GATC 3 cut(s) 151, 184, 307
NlaIII CATG 4 cut(s) 20, 73, 485, 499
NmuCI GTSAC 2 cut(s) 163, 169
NspV TTCGAA 1 cut(s) 100
PciSI GCTCTTC 2 cut(s) 97, 459
PcsI WCGNNNNNNNCGW 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 195
RsaI GTAC 1 cut(s) 490
RsaNI GTAC 1 cut(s) 489
SapI GCTCTTC 2 cut(s) 97, 459
Sau3AI GATC 3 cut(s) 151, 184, 307
SetI ASST 7 cut(s) 60, 99, 150, 183, 198, 363, 436
SfuI TTCGAA 1 cut(s) 100
SsiI CCGC 1 cut(s) 230
SspI AATATT 1 cut(s) 236
SspMI CTAG 1 cut(s) 411
TaaI ACNGT 2 cut(s) 136, 169
TaiI ACGT 3 cut(s) 150, 183, 363
TaqI TCGA 6 cut(s) 28, 100, 120, 154, 187, 441
TatI WGTACW 1 cut(s) 488
TseFI GTSAC 2 cut(s) 163, 169
Tsp45I GTSAC 2 cut(s) 163, 169
TspDTI ATGAA 3 cut(s) 405, 446, 459
XmiI GTMKAC 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.