Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8042714.1

Orthogroup ID

OG0011421

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 550

Gene Structure 550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8042714.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 323 bp

gtgtggatagcttggaaatagatatggataagcaaaaggtgacagtgaccggatatgtggatcaaaggaaagtgttgaaggtggtgagacgaacgggaaggaaagccgagttttggccatttccatatgactccgaatactatccctacgcatctcaatacttcgacgagtcaacctactcgtcatcgtataactactacatgcacggctataatgaagccattcatggatatttccctgaccctctgtattcgactgtatctgatcaaactgttcatcttttcagtgatgacaatgttcatgcatattgcaccgttatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

106

Amino Acids

12.53

Weight (kDa)

4.95

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56891 AT3G56891
fragaria_vesca	FvH4_2g26780
malus_domestica	MD03G1023000.v1.1
prunus_persica	Prupe.7G025000_v2.0.a1
pyrus_communis	pycom03g01930
rosa_chinensis	RchiOBHm_Chr3g0495281
rosa_laevigata	RLG00000022631
rosa_multiflora	Rmu_co8042714.1_g000001 Rmu_sc0002433.1_g000005 Rmu_sc0002433.1_g000007
rosa_roxburghii	Rroxscaffold_6G00390640
rosa_rugosa	Rorug03G0272000 Rorug03G0272100 Rorug03G0272200
rosa_samantha	Rh3AG320400 Rh3BG355200 Rh3CG352200 Rh3DG354300
rosa_wichuraiana	Rw3G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	78
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	115
Asp700I	GAANNNNTTC	1 cut(s)	221
AsuHPI	GGTGA	2 cut(s)	51, 96
BalI	TGGCCA	1 cut(s)	117
BceAI	ACGGC	1 cut(s)	222
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	81
BmsI	GCATC	1 cut(s)	160
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	81
BsmBI	CGTCTC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	60, 264
BspANI	GGCC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	68
BssMI	GATC	2 cut(s)	60, 264
Bst4CI	ACNGT	4 cut(s)	45, 258, 273, 315
BstKTI	GATC	2 cut(s)	63, 267
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	2 cut(s)	60, 264
BstNSI	RCATGY	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	50, 291
CviAII	CATG	3 cut(s)	201, 226, 301
CviJI	RGCY	5 cut(s)	11, 106, 117, 209, 220
CviKI_1	RGCY	5 cut(s)	11, 106, 117, 209, 220
DpnI	GATC	2 cut(s)	62, 266
DpnII	GATC	2 cut(s)	60, 264
EaeI	YGGCCR	1 cut(s)	115
EcoT22I	ATGCAT	1 cut(s)	306
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	3 cut(s)	204, 229, 304
FatI	CATG	3 cut(s)	200, 225, 300
FauNDI	CATATG	1 cut(s)	126
FbaI	TGATCA	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	3 cut(s)	204, 229, 304
HincII	GTYRAC	1 cut(s)	173
HindII	GTYRAC	1 cut(s)	173
HinfI	GANTC	2 cut(s)	130, 169
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	2 cut(s)	51, 96
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	2 cut(s)	135, 264
Hpy8I	GTNNAC	1 cut(s)	173
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	72, 92
HpyCH4III	ACNGT	4 cut(s)	45, 258, 273, 315
HpyCH4V	TGCA	3 cut(s)	204, 304, 311
Hsp92II	CATG	3 cut(s)	204, 229, 304
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	60, 264
LpnPI	CCDG	2 cut(s)	63, 251
LweI	GCATC	1 cut(s)	160
MaeIII	GTNAC	2 cut(s)	39, 45
MalI	GATC	2 cut(s)	62, 266
MboI	GATC	2 cut(s)	60, 264
MlsI	TGGCCA	1 cut(s)	117
MluNI	TGGCCA	1 cut(s)	117
MlyI	GAGTC	2 cut(s)	124, 178
MnlI	CCTC	1 cut(s)	254
Mox20I	TGGCCA	1 cut(s)	117
Mph1103I	ATGCAT	1 cut(s)	306
MroXI	GAANNNNTTC	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	316
Msp20I	TGGCCA	1 cut(s)	117
MspI	CCGG	1 cut(s)	50
NdeI	CATATG	1 cut(s)	126
NdeII	GATC	2 cut(s)	60, 264
NlaIII	CATG	3 cut(s)	204, 229, 304
NmeAIII	GCCGAG	1 cut(s)	132
NmuCI	GTSAC	2 cut(s)	39, 45
NsiI	ATGCAT	1 cut(s)	306
NspI	RCATGY	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	221
PleI	GAGTC	2 cut(s)	124, 177
PpsI	GAGTC	2 cut(s)	124, 177
RseI	CAYNNNNRTG	1 cut(s)	316
Sau3AI	GATC	2 cut(s)	60, 264
SchI	GAGTC	2 cut(s)	124, 178
SetI	ASST	4 cut(s)	13, 41, 83, 178
SfaNI	GCATC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	316
TaaI	ACNGT	4 cut(s)	45, 258, 273, 315
TaqI	TCGA	2 cut(s)	164, 253
TscAI	CASTG	2 cut(s)	50, 291
TseFI	GTSAC	2 cut(s)	39, 45
Tsp45I	GTSAC	2 cut(s)	39, 45
TspDTI	ATGAA	4 cut(s)	214, 230, 265, 289
TspRI	CASTG	2 cut(s)	50, 291
XceI	RCATGY	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	221
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.