Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011421

Physical Location & Seq

Genomic Coordinates Forward (+)

26831907 .. 26837470

Gene Structure 5564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0272100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGAGGAGTGTAAGCCCACTGAGATCAGCAGCTCAAAGATGTTTGGAGGGTACAACAAGAGATACAAGCACTTCAGTCCTACACTGGGCTGCTCCATGACCTTCCACATCTATTTTCCTCCTTCTCCTTCCCCTTCCCCTTCCCACAAATTCCCCGTTCTTTACTGGCTCTCTGGCCTTACCTGCACAGATGAGAATTTCATAACCAAATCAGGCGCTCAGCGTTCTGCGGCAAAGGAGGGTATTGCTTTGATTGCCCCTGATACATCTCCTAGAGGCTTGTCTATTGAAGGAGAAGCAGATAGCTGGGATTTTGGTGTAGGTGCTGGATTTTATCTCAATGCTACCCAGGAGAAATGGAAGAACTGGCGTATGTATGATTATGTTGTCAAGGAGTTGCCCAAACTTCTGAATGAAAATTTTCCACAGCTTGATACATTGCGGGCATCTATATCTGGTCACTCAATGGGTGGACATGGTGCTTTGACAATCTTCCTGAAAAACCTAGACAAATATAAGTCAGTATCTGCCTTCGCACCAATTGTGAATCCTATCAACTGCCCATGGGGTCAGAAAGCTTTCTCAAATTATCTAGGTGGCAATAAAGCTGACTGGGAGGAATATGATGCCACTTGCCTAATTAAGAAGTTTAATGATGTGTCAGCCACCATTTTAATTGATCAGGGGGAGGATGACAAATTCTTGCATGATCAGCTACTACCACATAAGTTTGCAGAGGCATGCAGCAGTGCTAAAGTTCCACTTCTACTGCGTACCCAGCCTGGTTATGATCACTCATACTGTTTCATTTCTACCTTCATAGACGATCACATCAGTCACCATGCTCAAGCTGTTAAACTGCCTACACCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

291

Amino Acids

32.47

Weight (kDa)

6.41

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Esterase	PF00756	26 - 278	3e-59	Putative esterase
Peptidase_S9	PF00326	112 - 267	3.5e-09	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56891 AT3G56891
fragaria_vesca	FvH4_2g26780
malus_domestica	MD03G1023000.v1.1
prunus_persica	Prupe.7G025000_v2.0.a1
pyrus_communis	pycom03g01930
rosa_chinensis	RchiOBHm_Chr3g0495281
rosa_laevigata	RLG00000022631
rosa_multiflora	Rmu_co8042714.1_g000001 Rmu_sc0002433.1_g000005 Rmu_sc0002433.1_g000007
rosa_roxburghii	Rroxscaffold_6G00390640
rosa_rugosa	Rorug03G0272000 Rorug03G0272100 Rorug03G0272200
rosa_samantha	Rh3AG320400 Rh3BG355200 Rh3CG352200 Rh3DG354300
rosa_wichuraiana	Rw3G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	191
AciI	CCGC	2 cut(s)	230, 442
AcsI	RAATTY	4 cut(s)	149, 196, 418, 698
AcuI	CTGAAG	1 cut(s)	58
AfaI	GTAC	2 cut(s)	53, 775
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	290
AjnI	CCWGG	2 cut(s)	348, 781
AluBI	AGCT	7 cut(s)	33, 306, 430, 578, 608, 715, 851
AluI	AGCT	7 cut(s)	33, 306, 430, 578, 608, 715, 851
AlwNI	CAGNNNCTG	1 cut(s)	527
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	3 cut(s)	30, 90, 744
ApoI	RAATTY	4 cut(s)	149, 196, 418, 698
Asp700I	GAANNNNTTC	2 cut(s)	420, 578
AspLEI	GCGC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	830
BbvI	GCAGC	3 cut(s)	42, 77, 756
BciT130I	CCWGG	2 cut(s)	350, 783
BclI	TGATCA	3 cut(s)	679, 709, 790
BfaI	CTAG	3 cut(s)	273, 506, 593
BfoI	RGCGCY	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	191
BisI	GCNGC	4 cut(s)	31, 91, 231, 745
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	4 cut(s)	32, 92, 232, 746
Bme1390I	CCNGG	2 cut(s)	350, 783
BmrFI	CCNGG	2 cut(s)	350, 783
BmrI	ACTGGG	2 cut(s)	95, 622
BmsI	GCATC	2 cut(s)	455, 616
BmuI	ACTGGG	2 cut(s)	95, 622
Bpu1102I	GCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	831
BsaJI	CCNNGG	2 cut(s)	348, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	4 cut(s)	90, 170, 371, 617
Bse3DI	GCAATG	1 cut(s)	437
BseBI	CCWGG	2 cut(s)	350, 783
BseDI	CCNNGG	2 cut(s)	348, 563
BseGI	GGATG	1 cut(s)	697
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMI	GCAATG	1 cut(s)	437
BseMII	CTCAG	2 cut(s)	12, 233
BseNI	ACTGG	4 cut(s)	90, 170, 371, 617
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	42, 77, 756
BseYI	CCCAGC	2 cut(s)	306, 777
BsgI	GTGCAG	1 cut(s)	169
BshFI	GGCC	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	86
BsnI	GGCC	1 cut(s)	177
Bsp143I	GATC	5 cut(s)	24, 679, 709, 790, 826
Bsp1720I	GCTNAGC	1 cut(s)	219
Bsp19I	CCATGG	1 cut(s)	563
BspACI	CCGC	2 cut(s)	230, 442
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	2 cut(s)	13, 232
BspMI	ACCTGC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	437
BsrI	ACTGG	4 cut(s)	90, 170, 371, 617
BssECI	CCNNGG	2 cut(s)	348, 563
BssMI	GATC	5 cut(s)	24, 679, 709, 790, 826
BssT1I	CCWWGG	1 cut(s)	563
Bst2UI	CCWGG	2 cut(s)	350, 783
Bst4CI	ACNGT	1 cut(s)	803
BstC8I	GCNNGC	2 cut(s)	444, 742
BstDEI	CTNAG	2 cut(s)	21, 219
BstDSI	CCRYGG	1 cut(s)	563
BstF5I	GGATG	1 cut(s)	697
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	5 cut(s)	27, 682, 712, 793, 829
BstMBI	GATC	5 cut(s)	24, 679, 709, 790, 826
BstMWI	GCNNNNNNNGC	4 cut(s)	183, 254, 712, 778
BstNI	CCWGG	2 cut(s)	350, 783
BstNSI	RCATGY	1 cut(s)	744
BstSCI	CCNGG	2 cut(s)	348, 781
BstV1I	GCAGC	3 cut(s)	42, 77, 756
BsuRI	GGCC	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	563
BtsCI	GGATG	1 cut(s)	697
BtsI	GCAGTG	1 cut(s)	754
BtsIMutI	CAGTG	3 cut(s)	18, 83, 754
BveI	ACCTGC	1 cut(s)	191
Cac8I	GCNNGC	2 cut(s)	444, 742
CaiI	CAGNNNCTG	1 cut(s)	527
CfoI	GCGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	52, 774
CviAII	CATG	7 cut(s)	97, 476, 564, 707, 741, 842, 873
CviQI	GTAC	2 cut(s)	52, 774
DdeI	CTNAG	2 cut(s)	21, 219
DpnI	GATC	5 cut(s)	26, 681, 711, 792, 828
DpnII	GATC	5 cut(s)	24, 679, 709, 790, 826
Eco130I	CCWWGG	1 cut(s)	563
Eco57I	CTGAAG	1 cut(s)	58
EcoRII	CCWGG	2 cut(s)	348, 781
EcoT14I	CCWWGG	1 cut(s)	563
ErhI	CCWWGG	1 cut(s)	563
FaeI	CATG	7 cut(s)	100, 479, 567, 710, 744, 845, 876
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FatI	CATG	7 cut(s)	96, 475, 563, 706, 740, 841, 872
FauI	CCCGC	1 cut(s)	435
FbaI	TGATCA	3 cut(s)	679, 709, 790
Fnu4HI	GCNGC	4 cut(s)	31, 91, 231, 745
FokI	GGATG	1 cut(s)	704
Fsp4HI	GCNGC	4 cut(s)	31, 91, 231, 745
FspBI	CTAG	3 cut(s)	273, 506, 593
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	4 cut(s)	31, 91, 231, 745
GsaI	CCCAGC	2 cut(s)	310, 781
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	177
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	7 cut(s)	100, 479, 567, 710, 744, 845, 876
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	576
HinfI	GANTC	1 cut(s)	547
HphI	GGTGA	1 cut(s)	830
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	2 cut(s)	411, 573
Hpy188III	TCNNGA	1 cut(s)	496
Hpy8I	GTNNAC	1 cut(s)	473
HpyAV	CCTTC	8 cut(s)	112, 132, 138, 144, 150, 284, 541, 826
HpyCH4III	ACNGT	1 cut(s)	803
HpyCH4V	TGCA	4 cut(s)	186, 706, 734, 744
HpyF10VI	GCNNNNNNNGC	4 cut(s)	183, 254, 712, 778
HpyF3I	CTNAG	2 cut(s)	21, 219
Hsp92II	CATG	7 cut(s)	100, 479, 567, 710, 744, 845, 876
HspAI	GCGC	1 cut(s)	216
Ksp22I	TGATCA	3 cut(s)	679, 709, 790
Kzo9I	GATC	5 cut(s)	24, 679, 709, 790, 826
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	3 cut(s)	42, 77, 756
LweI	GCATC	2 cut(s)	455, 616
MaeI	CTAG	3 cut(s)	273, 506, 593
MaeIII	GTNAC	2 cut(s)	458, 836
MalI	GATC	5 cut(s)	26, 681, 711, 792, 828
MboI	GATC	5 cut(s)	24, 679, 709, 790, 826
MboII	GAAGA	2 cut(s)	373, 484
MfeI	CAATTG	1 cut(s)	540
MluCI	AATT	8 cut(s)	149, 196, 418, 540, 586, 639, 675, 698
MnlI	CCTC	7 cut(s)	41, 129, 232, 269, 610, 682, 730
MroXI	GAANNNNTTC	2 cut(s)	420, 578
MseI	TTAA	4 cut(s)	642, 651, 674, 855
MslI	CAYNNNNRTG	1 cut(s)	871
MspR9I	CCNGG	2 cut(s)	350, 783
MunI	CAATTG	1 cut(s)	540
MvaI	CCWGG	2 cut(s)	350, 783
MwoI	GCNNNNNNNGC	4 cut(s)	183, 254, 712, 778
NcoI	CCATGG	1 cut(s)	563
NdeII	GATC	5 cut(s)	24, 679, 709, 790, 826
NlaIII	CATG	7 cut(s)	100, 479, 567, 710, 744, 845, 876
NmuCI	GTSAC	2 cut(s)	458, 836
NspI	RCATGY	1 cut(s)	744
PaeI	GCATGC	1 cut(s)	744
PdmI	GAANNNNTTC	2 cut(s)	420, 578
PfeI	GAWTC	1 cut(s)	547
PkrI	GCNGC	4 cut(s)	32, 92, 232, 746
Psp6I	CCWGG	2 cut(s)	348, 781
PspFI	CCCAGC	2 cut(s)	306, 777
PspGI	CCWGG	2 cut(s)	348, 781
PstNI	CAGNNNCTG	1 cut(s)	527
RsaI	GTAC	2 cut(s)	53, 775
RsaNI	GTAC	2 cut(s)	52, 774
RseI	CAYNNNNRTG	1 cut(s)	871
SaqAI	TTAA	4 cut(s)	642, 651, 674, 855
SatI	GCNGC	4 cut(s)	31, 91, 231, 745
Sau3AI	GATC	5 cut(s)	24, 679, 709, 790, 826
ScrFI	CCNGG	2 cut(s)	350, 783
SfaNI	GCATC	2 cut(s)	455, 616
SmiMI	CAYNNNNRTG	1 cut(s)	871
SmlI	CTYRAG	1 cut(s)	846
SmoI	CTYRAG	1 cut(s)	846
SphI	GCATGC	1 cut(s)	744
Sse9I	AATT	8 cut(s)	149, 196, 418, 540, 586, 639, 675, 698
SsiI	CCGC	2 cut(s)	230, 442
SspMI	CTAG	3 cut(s)	273, 506, 593
StyD4I	CCNGG	2 cut(s)	348, 781
StyI	CCWWGG	1 cut(s)	563
TaaI	ACNGT	1 cut(s)	803
TasI	AATT	8 cut(s)	149, 196, 418, 540, 586, 639, 675, 698
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	547
Tru1I	TTAA	4 cut(s)	642, 651, 674, 855
Tru9I	TTAA	4 cut(s)	642, 651, 674, 855
TscAI	CASTG	3 cut(s)	25, 90, 754
TseFI	GTSAC	2 cut(s)	458, 836
TseI	GCWGC	3 cut(s)	30, 90, 744
Tsp45I	GTSAC	2 cut(s)	458, 836
TspDTI	ATGAA	4 cut(s)	190, 429, 796, 808
TspRI	CASTG	3 cut(s)	25, 90, 754
XapI	RAATTY	4 cut(s)	149, 196, 418, 698
XceI	RCATGY	1 cut(s)	744
XmnI	GAANNNNTTC	2 cut(s)	420, 578
XspI	CTAG	3 cut(s)	273, 506, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.