Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011421

Physical Location & Seq

Genomic Coordinates Reverse (-)

26840540 .. 26841643

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0272200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTCCGGATACCCACACCCACCGCCAAACTACGGCTACGGCAGCGCCCCTCCACCCGGCGGCGGTGGATACCCGGCGCCGACCCCTGCTCCGGGCTACGGAAGCCCCTTTGGTGCTCTGGTGCCGTCGTCGTTCCCGCCCGGTACGGACCCGAACGGGGTGGCTTGCGAGAGAAAGATCGCAATGGAGAGCCACTCGCCGGAGGCTTCAAGCAATTGGAGGAAAGCCGTCGGCCGCGTCAAGAACGCCTCCAGGAAGTTCCAAGCCAAAGTGAAGGATTTTGTTCTCGAGTGTCGAAAAGTGGAAGCAGCCTTCATAAAACCTTCAACACGAGAATGGGTGATCAAGTTCCAGCAGATGGACTTTTCATATGAGAGTGAGCCAGTGAATGTATATGAAGAAAAACCCTTTTCGCCGTCGTCGTTCCCGCCTGGCACGGACCCGAACGTGGTGGCTTGCTTTCAGATTGCTGATCAGGACGGCAGCGGGTTCGTCGACGACAGGGAGTTGCATTTGAATATGATAGAGACAGGAGTGGGAAAATTGACTCAACTGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

186

Amino Acids

20.1

Weight (kDa)

5.93

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56891 AT3G56891
fragaria_vesca	FvH4_2g26780
malus_domestica	MD03G1023000.v1.1
prunus_persica	Prupe.7G025000_v2.0.a1
pyrus_communis	pycom03g01930
rosa_chinensis	RchiOBHm_Chr3g0495281
rosa_laevigata	RLG00000022631
rosa_multiflora	Rmu_co8042714.1_g000001 Rmu_sc0002433.1_g000005 Rmu_sc0002433.1_g000007
rosa_roxburghii	Rroxscaffold_6G00390640
rosa_rugosa	Rorug03G0272000 Rorug03G0272100 Rorug03G0272200
rosa_samantha	Rh3AG320400 Rh3BG355200 Rh3CG352200 Rh3DG354300
rosa_wichuraiana	Rw3G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	76, 121
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccI	GTMKAC	1 cut(s)	495
AccII	CGCG	1 cut(s)	237
AccIII	TCCGGA	1 cut(s)	5
AciI	CCGC	7 cut(s)	23, 60, 63, 137, 235, 428, 486
AcoI	YGGCCR	1 cut(s)	232
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	210, 327, 517
AjnI	CCWGG	2 cut(s)	251, 430
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	521
Ama87I	CYCGRG	1 cut(s)	287
Aor13HI	TCCGGA	1 cut(s)	5
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	3 cut(s)	42, 308, 483
AspLEI	GCGC	2 cut(s)	47, 79
AspS9I	GGNCC	2 cut(s)	148, 439
AsuC2I	CCSGG	4 cut(s)	57, 74, 93, 141
AsuHPI	GGTGA	1 cut(s)	352
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	2 cut(s)	148, 439
BanI	GGYRCC	2 cut(s)	76, 121
BauI	CACGAG	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	3 cut(s)	54, 320, 495
BccI	CCATC	1 cut(s)	352
BceAI	ACGGC	6 cut(s)	49, 55, 109, 212, 400, 496
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciT130I	CCWGG	2 cut(s)	253, 432
BciVI	GTATCC	1 cut(s)	62
BclI	TGATCA	2 cut(s)	342, 472
BcnI	CCSGG	4 cut(s)	57, 74, 93, 141
BcoDI	GTCTC	1 cut(s)	521
BfoI	RGCGCY	2 cut(s)	48, 80
BfuI	GTATCC	1 cut(s)	62
BisI	GCNGC	5 cut(s)	43, 61, 235, 309, 484
BlsI	GCNGC	5 cut(s)	44, 62, 236, 310, 485
Bme1390I	CCNGG	6 cut(s)	57, 74, 93, 141, 253, 432
Bme18I	GGWCC	2 cut(s)	148, 439
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	148, 439
BmiI	GGNNCC	4 cut(s)	78, 123, 150, 441
BmrFI	CCNGG	6 cut(s)	57, 74, 93, 141, 253, 432
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BpmI	CTGGAG	1 cut(s)	235
BpuMI	CCSGG	4 cut(s)	57, 74, 93, 141
BsaHI	GRCGYC	1 cut(s)	77
BsaWI	WCCGGW	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bse1I	ACTGG	1 cut(s)	383
Bse3DI	GCAATG	1 cut(s)	189
BseAI	TCCGGA	1 cut(s)	5
BseBI	CCWGG	2 cut(s)	253, 432
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	545
BseNI	ACTGG	1 cut(s)	383
BseX3I	CGGCCG	1 cut(s)	232
BseXI	GCAGC	3 cut(s)	54, 320, 495
Bsh1236I	CGCG	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	234
BshNI	GGYRCC	2 cut(s)	76, 121
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	6 cut(s)	6, 57, 74, 92, 141, 200
BsmAI	GTCTC	1 cut(s)	521
BsnI	GGCC	1 cut(s)	234
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp13I	TCCGGA	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	177, 342, 472
BspACI	CCGC	7 cut(s)	23, 60, 63, 137, 235, 428, 486
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	546
BspEI	TCCGGA	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	4 cut(s)	78, 123, 150, 441
BspT107I	GGYRCC	2 cut(s)	76, 121
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	383
BssMI	GATC	3 cut(s)	177, 342, 472
BssNI	GRCGYC	1 cut(s)	77
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst2UI	CCWGG	2 cut(s)	253, 432
BstACI	GRCGYC	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	166, 457
BstDEI	CTNAG	1 cut(s)	554
BstFNI	CGCG	1 cut(s)	237
BstH2I	RGCGCY	2 cut(s)	48, 80
BstHHI	GCGC	2 cut(s)	47, 79
BstKTI	GATC	3 cut(s)	180, 345, 475
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	3 cut(s)	177, 342, 472
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 102
BstNI	CCWGG	2 cut(s)	253, 432
BstSCI	CCNGG	6 cut(s)	55, 72, 91, 139, 251, 430
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	3 cut(s)	54, 320, 495
BstZI	CGGCCG	1 cut(s)	232
BsuI	GTATCC	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	166, 457
CfoI	GCGC	2 cut(s)	47, 79
Cfr13I	GGNCC	2 cut(s)	148, 439
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	144
CviQI	GTAC	1 cut(s)	144
DdeI	CTNAG	1 cut(s)	554
DinI	GGCGCC	1 cut(s)	78
DpnI	GATC	3 cut(s)	179, 344, 474
DpnII	GATC	3 cut(s)	177, 342, 472
EaeI	YGGCCR	1 cut(s)	232
EagI	CGGCCG	1 cut(s)	232
EclXI	CGGCCG	1 cut(s)	232
Eco47I	GGWCC	2 cut(s)	148, 439
Eco52I	CGGCCG	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	251, 430
EgeI	GGCGCC	1 cut(s)	78
EheI	GGCGCC	1 cut(s)	78
FaiI	YATR	6 cut(s)	317, 370, 372, 394, 396, 521
FauI	CCCGC	3 cut(s)	144, 435, 479
FauNDI	CATATG	1 cut(s)	370
FbaI	TGATCA	2 cut(s)	342, 472
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	5 cut(s)	43, 61, 235, 309, 484
Fsp4HI	GCNGC	5 cut(s)	43, 61, 235, 309, 484
GlaI	GCGC	2 cut(s)	46, 78
GluI	GCNGC	5 cut(s)	43, 61, 235, 309, 484
GsuI	CTGGAG	1 cut(s)	235
HaeII	RGCGCY	2 cut(s)	48, 80
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	6 cut(s)	6, 57, 74, 92, 141, 200
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	2 cut(s)	47, 79
Hin1I	GRCGYC	1 cut(s)	77
Hin6I	GCGC	2 cut(s)	45, 77
HinP1I	GCGC	2 cut(s)	45, 77
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	1 cut(s)	547
HpaII	CCGG	6 cut(s)	6, 57, 74, 92, 141, 200
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	1 cut(s)	465
Hpy188III	TCNNGA	4 cut(s)	6, 241, 287, 476
Hpy8I	GTNNAC	1 cut(s)	496
Hpy99I	CGWCG	7 cut(s)	130, 133, 233, 421, 424, 497, 500
HpyAV	CCTTC	3 cut(s)	268, 322, 333
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	1 cut(s)	511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 102
HpyF3I	CTNAG	1 cut(s)	554
HpySE526I	ACGT	1 cut(s)	447
Hsp92I	GRCGYC	1 cut(s)	77
HspAI	GCGC	2 cut(s)	45, 77
KasI	GGCGCC	1 cut(s)	76
Kpn2I	TCCGGA	1 cut(s)	5
Ksp22I	TGATCA	2 cut(s)	342, 472
Kzo9I	GATC	3 cut(s)	177, 342, 472
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	3 cut(s)	54, 320, 495
MaeII	ACGT	1 cut(s)	447
MalI	GATC	3 cut(s)	179, 344, 474
MboI	GATC	3 cut(s)	177, 342, 472
MboII	GAAGA	1 cut(s)	410
MfeI	CAATTG	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	2 cut(s)	214, 542
Mly113I	GGCGCC	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	541
MnlI	CCTC	4 cut(s)	60, 196, 213, 259
MroI	TCCGGA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	334
MspA1I	CMGCKG	1 cut(s)	486
MspI	CCGG	6 cut(s)	6, 57, 74, 92, 141, 200
MspR9I	CCNGG	6 cut(s)	57, 74, 93, 141, 253, 432
MunI	CAATTG	1 cut(s)	214
MvaI	CCWGG	2 cut(s)	253, 432
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	42, 102
NarI	GGCGCC	1 cut(s)	77
NciI	CCSGG	4 cut(s)	57, 74, 93, 141
NdeI	CATATG	1 cut(s)	370
NdeII	GATC	3 cut(s)	177, 342, 472
NlaIV	GGNNCC	4 cut(s)	78, 123, 150, 441
PaeR7I	CTCGAG	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	1 cut(s)	419
PflMI	CCANNNNNTGG	1 cut(s)	358
PfoI	TCCNGGA	1 cut(s)	251
PkrI	GCNGC	5 cut(s)	44, 62, 236, 310, 485
PleI	GAGTC	1 cut(s)	541
PluTI	GGCGCC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	541
Psp6I	CCWGG	2 cut(s)	251, 430
PspGI	CCWGG	2 cut(s)	251, 430
PspN4I	GGNNCC	4 cut(s)	78, 123, 150, 441
PspPI	GGNCC	2 cut(s)	148, 439
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	334
SalI	GTCGAC	1 cut(s)	494
SatI	GCNGC	5 cut(s)	43, 61, 235, 309, 484
Sau3AI	GATC	3 cut(s)	177, 342, 472
Sau96I	GGNCC	2 cut(s)	148, 439
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	6 cut(s)	57, 74, 93, 141, 253, 432
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	2 cut(s)	325, 450
SfoI	GGCGCC	1 cut(s)	78
Sfr274I	CTCGAG	1 cut(s)	287
SgrDI	CGTCGACG	1 cut(s)	494
SinI	GGWCC	2 cut(s)	148, 439
SlaI	CTCGAG	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	2 cut(s)	214, 542
SsiI	CCGC	7 cut(s)	23, 60, 63, 137, 235, 428, 486
SspDI	GGCGCC	1 cut(s)	76
StyD4I	CCNGG	6 cut(s)	55, 72, 91, 139, 251, 430
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	3 cut(s)	288, 295, 495
TasI	AATT	2 cut(s)	214, 542
TauI	GCSGC	2 cut(s)	63, 237
TscAI	CASTG	1 cut(s)	390
TseI	GCWGC	3 cut(s)	42, 308, 483
TspDTI	ATGAA	3 cut(s)	304, 357, 411
TspGWI	ACGGA	3 cut(s)	114, 161, 452
TspRI	CASTG	1 cut(s)	390
Van91I	CCANNNNNTGG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	148, 439
XhoI	CTCGAG	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.