Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011421

Physical Location & Seq

Genomic Coordinates Forward (+)

26816544 .. 26817777

Gene Structure 1234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0272000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCTCTCAGGGGTTCCAATTCCAGACTCCCAAGGACAGAAGGATCCGTTTATGCAAGAAGACCTGCTTCCGAAACCGTCTGCAAGTTTTGGGTGATGTGCAGATGCCTCAAGAAAGAGTGTCGGTTCCTACACGCTGACCCGGAACAAAAGACTCTTGCATTAATGGAGGAGCAGGGAAAATCTATGGGGAAAGCATCTGATTCTGTTAATGTTATGGTTGAGAATAGCATCGATACCCATAAAGGGAAAGTGGCCGAAGCAGTCTGCAAGTTCTGGGCAGATGGAAAGTGTGTAAGACGTGAAGGGTGCCCTTATTTGCACAATTGGTTCAGTGGAGATGGCTTTTCTTCCTTGGCAAAACTCCAAGGCCATAATTGTGCTTCCGGAGAGAAGGTAATCAATCTTGGTGCTGAACTAGGCTGCTTGATTAGTAAGGGTGCATGGGTTTTCTGTGGTGCTTCCAATCTCGTCAAGGCGTGGAATATTGAGTCCAATGCTGAATTTACCCTAGCTGGACCTGTTGGTAAAGTCCATGCCATGGAAGTTGGGAATGATATGGTATTCGCAGGGACAGAGGAAGTGGCCACTGATGATGTGGTTTCTTTAAGGGTTGGAAATATCAGACTCTACTCAGGTTTTGTGGACCATACAATAAGGGAATGGAATCTTGACACTTTGGAGTGTGCTATGACTCTAAATGGACATTCTGATGCTGAGGCATGCAACATTGAAGAAATCTACACTCACAATGAAGAAGACGGTCTTCTTGCTCTCTCTGGAATGTATGATGCTGAAGATAAACCAGTCCTACTTTGCTCATCAAAAGACAATTCTGTCCGCATAGATGATTTTCCATCATTTGATGAGAAAGGAAGATTATTTGCAAAACGAGAAGTTCGGGCTATTCAAGTGGACCTTGGAGGACTATTCTTCATTGGGGACGAAAATGGAGGACTTTCCATGTGGAAGTGGTTTGAACCTGCAGTCAAACAAGAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

334

Amino Acids

36.86

Weight (kDa)

5.24

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56891 AT3G56891
fragaria_vesca	FvH4_2g26780
malus_domestica	MD03G1023000.v1.1
prunus_persica	Prupe.7G025000_v2.0.a1
pyrus_communis	pycom03g01930
rosa_chinensis	RchiOBHm_Chr3g0495281
rosa_laevigata	RLG00000022631
rosa_multiflora	Rmu_co8042714.1_g000001 Rmu_sc0002433.1_g000005 Rmu_sc0002433.1_g000007
rosa_roxburghii	Rroxscaffold_6G00390640
rosa_rugosa	Rorug03G0272000 Rorug03G0272100 Rorug03G0272200
rosa_samantha	Rh3AG320400 Rh3BG355200 Rh3CG352200 Rh3DG354300
rosa_wichuraiana	Rw3G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	836
Acc36I	ACCTGC	2 cut(s)	73, 991
AccB1I	GGYRCC	1 cut(s)	309
AccB7I	CCANNNNNTGG	1 cut(s)	541
AccIII	TCCGGA	1 cut(s)	386
AciI	CCGC	1 cut(s)	841
AclWI	GGATC	2 cut(s)	39, 52
AcoI	YGGCCR	2 cut(s)	255, 585
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	1 cut(s)	816
AfiI	CCNNNNNNNGG	2 cut(s)	246, 541
AgsI	TTSAA	3 cut(s)	734, 911, 980
AjiI	CACGTC	1 cut(s)	302
AluBI	AGCT	1 cut(s)	515
AluI	AGCT	1 cut(s)	515
AlwI	GGATC	2 cut(s)	39, 52
Aor13HI	TCCGGA	1 cut(s)	386
AoxI	GGCC	3 cut(s)	255, 370, 585
ApeKI	GCWGC	1 cut(s)	423
ApoI	RAATTY	1 cut(s)	503
AseI	ATTAAT	1 cut(s)	164
AspS9I	GGNCC	3 cut(s)	518, 646, 916
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	3 cut(s)	518, 646, 916
BaeGI	GKGCMC	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	587
BamHI	GGATCC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	309
BbsI	GAAGAC	3 cut(s)	67, 758, 765
BbvCI	CCTCAGC	1 cut(s)	717
BbvI	GCAGC	1 cut(s)	410
BccI	CCATC	3 cut(s)	278, 335, 865
BcnI	CCSGG	1 cut(s)	143
BfaI	CTAG	2 cut(s)	419, 512
BfmI	CTRYAG	1 cut(s)	984
BfuAI	ACCTGC	2 cut(s)	73, 991
BisI	GCNGC	1 cut(s)	424
BlsI	GCNGC	1 cut(s)	425
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	3 cut(s)	518, 646, 916
BmgBI	CACGTC	1 cut(s)	302
BmgT120I	GGNCC	3 cut(s)	518, 646, 916
BmiI	GGNNCC	4 cut(s)	16, 46, 128, 311
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	5 cut(s)	95, 206, 240, 703, 781
BpiI	GAAGAC	3 cut(s)	67, 758, 765
Bpu10I	CCTNAGC	1 cut(s)	717
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	143
Bsa29I	ATCGAT	1 cut(s)	234
BsaJI	CCNNGG	5 cut(s)	32, 354, 367, 540, 919
BsaWI	WCCGGW	1 cut(s)	386
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 541
Bse1I	ACTGG	1 cut(s)	806
BseAI	TCCGGA	1 cut(s)	386
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	5 cut(s)	32, 354, 367, 540, 919
BseLI	CCNNNNNNNGG	2 cut(s)	246, 541
BseMII	CTCAG	3 cut(s)	22, 648, 708
BseNI	ACTGG	1 cut(s)	806
BseRI	GAGGAG	1 cut(s)	185
BseSI	GKGCMC	1 cut(s)	314
BseXI	GCAGC	1 cut(s)	410
BsgI	GTGCAG	1 cut(s)	121
BshFI	GGCC	3 cut(s)	257, 372, 587
BshNI	GGYRCC	1 cut(s)	309
BshVI	ATCGAT	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	143, 387
BslFI	GGGAC	2 cut(s)	586, 956
BslI	CCNNNNNNNGG	2 cut(s)	246, 541
BsmFI	GGGAC	2 cut(s)	586, 956
BsnI	GGCC	3 cut(s)	257, 372, 587
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp13I	TCCGGA	1 cut(s)	386
Bsp143I	GATC	1 cut(s)	44
Bsp19I	CCATGG	1 cut(s)	540
BspACI	CCGC	1 cut(s)	841
BspANI	GGCC	3 cut(s)	257, 372, 587
BspCNI	CTCAG	3 cut(s)	21, 647, 709
BspDI	ATCGAT	1 cut(s)	234
BspEI	TCCGGA	1 cut(s)	386
BspHI	TCATGA	1 cut(s)	1001
BspLI	GGNNCC	4 cut(s)	16, 46, 128, 311
BspMAI	CTGCAG	1 cut(s)	988
BspMI	ACCTGC	2 cut(s)	73, 991
BspPI	GGATC	2 cut(s)	39, 52
BspT107I	GGYRCC	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	806
BssECI	CCNNGG	5 cut(s)	32, 354, 367, 540, 919
BssMI	GATC	1 cut(s)	44
BssT1I	CCWWGG	5 cut(s)	32, 354, 367, 540, 919
Bst4CI	ACNGT	2 cut(s)	79, 764
BstC8I	GCNNGC	1 cut(s)	724
BstDEI	CTNAG	3 cut(s)	8, 634, 717
BstDSI	CCRYGG	1 cut(s)	540
BstKTI	GATC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	726
BstSCI	CCNGG	1 cut(s)	141
BstSFI	CTRYAG	1 cut(s)	984
BstSLI	GKGCMC	1 cut(s)	314
BstV1I	GCAGC	1 cut(s)	410
BstV2I	GAAGAC	3 cut(s)	67, 758, 765
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
Bsu15I	ATCGAT	1 cut(s)	234
BsuRI	GGCC	3 cut(s)	257, 372, 587
BsuTUI	ATCGAT	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	540
BtrI	CACGTC	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	340, 588
BveI	ACCTGC	2 cut(s)	73, 991
Cac8I	GCNNGC	1 cut(s)	724
CciI	TCATGA	1 cut(s)	1001
Cfr13I	GGNCC	3 cut(s)	518, 646, 916
ClaI	ATCGAT	1 cut(s)	234
CviAII	CATG	6 cut(s)	444, 536, 541, 723, 964, 1002
CviJI	RGCY	8 cut(s)	5, 257, 345, 372, 423, 515, 587, 905
CviKI_1	RGCY	8 cut(s)	5, 257, 345, 372, 423, 515, 587, 905
DdeI	CTNAG	3 cut(s)	8, 634, 717
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
DrdI	GACNNNNNNGTC	1 cut(s)	836
DseDI	GACNNNNNNGTC	1 cut(s)	836
EaeI	YGGCCR	2 cut(s)	255, 585
Eco130I	CCWWGG	5 cut(s)	32, 354, 367, 540, 919
Eco47I	GGWCC	3 cut(s)	518, 646, 916
Eco57I	CTGAAG	1 cut(s)	816
EcoT14I	CCWWGG	5 cut(s)	32, 354, 367, 540, 919
ErhI	CCWWGG	5 cut(s)	32, 354, 367, 540, 919
FaeI	CATG	6 cut(s)	447, 539, 544, 726, 967, 1005
FalI	AAGNNNNNCTT	6 cut(s)	52, 84, 750, 782, 903, 935
FaqI	GGGAC	2 cut(s)	586, 956
FatI	CATG	6 cut(s)	443, 535, 540, 722, 963, 1001
Fnu4HI	GCNGC	1 cut(s)	424
Fsp4HI	GCNGC	1 cut(s)	424
FspBI	CTAG	2 cut(s)	419, 512
GluI	GCNGC	1 cut(s)	424
HaeIII	GGCC	3 cut(s)	257, 372, 587
HapII	CCGG	2 cut(s)	143, 387
Hin1II	CATG	6 cut(s)	447, 539, 544, 726, 967, 1005
HinfI	GANTC	8 cut(s)	27, 154, 203, 491, 627, 667, 694, 998
HpaII	CCGG	2 cut(s)	143, 387
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	646, 916
Hpy188I	TCNGA	4 cut(s)	73, 202, 626, 712
Hpy188III	TCNNGA	6 cut(s)	24, 112, 387, 671, 780, 1002
Hpy8I	GTNNAC	2 cut(s)	646, 916
HpyAV	CCTTC	3 cut(s)	35, 299, 388
HpyCH4III	ACNGT	2 cut(s)	79, 764
HpyCH4IV	ACGT	1 cut(s)	301
HpyF3I	CTNAG	3 cut(s)	8, 634, 717
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	6 cut(s)	447, 539, 544, 726, 967, 1005
Kpn2I	TCCGGA	1 cut(s)	386
Kzo9I	GATC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	1 cut(s)	410
LweI	GCATC	5 cut(s)	95, 206, 240, 703, 781
MaeI	CTAG	2 cut(s)	419, 512
MaeII	ACGT	1 cut(s)	301
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MboII	GAAGA	9 cut(s)	72, 342, 746, 758, 767, 770, 809, 888, 925
MfeI	CAATTG	1 cut(s)	325
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	314
MlsI	TGGCCA	1 cut(s)	587
MluCI	AATT	5 cut(s)	19, 325, 376, 503, 832
MluNI	TGGCCA	1 cut(s)	587
MlyI	GAGTC	5 cut(s)	21, 148, 500, 621, 688
MmeI	TCCRAC	1 cut(s)	595
MnlI	CCTC	6 cut(s)	119, 163, 571, 712, 917, 947
Mox20I	TGGCCA	1 cut(s)	587
MroI	TCCGGA	1 cut(s)	386
MscI	TGGCCA	1 cut(s)	587
MseI	TTAA	3 cut(s)	164, 210, 608
MslI	CAYNNNNRTG	2 cut(s)	378, 711
Msp20I	TGGCCA	1 cut(s)	587
MspI	CCGG	2 cut(s)	143, 387
MspR9I	CCNGG	1 cut(s)	143
MunI	CAATTG	1 cut(s)	325
NciI	CCSGG	1 cut(s)	143
NcoI	CCATGG	1 cut(s)	540
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	6 cut(s)	447, 539, 544, 726, 967, 1005
NlaIV	GGNNCC	4 cut(s)	16, 46, 128, 311
NspI	RCATGY	1 cut(s)	726
PaeI	GCATGC	1 cut(s)	726
PagI	TCATGA	1 cut(s)	1001
PfeI	GAWTC	2 cut(s)	203, 667
PflMI	CCANNNNNTGG	1 cut(s)	541
PkrI	GCNGC	1 cut(s)	425
PleI	GAGTC	5 cut(s)	21, 148, 499, 621, 688
PpsI	GAGTC	5 cut(s)	21, 148, 499, 621, 688
PshBI	ATTAAT	1 cut(s)	164
PspN4I	GGNNCC	4 cut(s)	16, 46, 128, 311
PspPI	GGNCC	3 cut(s)	518, 646, 916
PstI	CTGCAG	1 cut(s)	988
PsuI	RGATCY	1 cut(s)	44
RseI	CAYNNNNRTG	2 cut(s)	378, 711
SaqAI	TTAA	3 cut(s)	164, 210, 608
SatI	GCNGC	1 cut(s)	424
Sau3AI	GATC	1 cut(s)	44
Sau96I	GGNCC	3 cut(s)	518, 646, 916
SchI	GAGTC	5 cut(s)	21, 148, 500, 621, 688
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	314
SetI	ASST	8 cut(s)	67, 304, 399, 517, 523, 640, 921, 985
SfaNI	GCATC	5 cut(s)	95, 206, 240, 703, 781
SfcI	CTRYAG	1 cut(s)	984
SinI	GGWCC	3 cut(s)	518, 646, 916
SmiMI	CAYNNNNRTG	2 cut(s)	378, 711
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SphI	GCATGC	1 cut(s)	726
Sse9I	AATT	5 cut(s)	19, 325, 376, 503, 832
SsiI	CCGC	1 cut(s)	841
SspI	AATATT	1 cut(s)	487
SspMI	CTAG	2 cut(s)	419, 512
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	5 cut(s)	32, 354, 367, 540, 919
TaaI	ACNGT	2 cut(s)	79, 764
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	234
TasI	AATT	5 cut(s)	19, 325, 376, 503, 832
TfiI	GAWTC	2 cut(s)	203, 667
Tru1I	TTAA	3 cut(s)	164, 210, 608
Tru9I	TTAA	3 cut(s)	164, 210, 608
TscAI	CASTG	2 cut(s)	340, 595
TseI	GCWGC	1 cut(s)	423
TspDTI	ATGAA	2 cut(s)	768, 925
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	2 cut(s)	340, 595
Van91I	CCANNNNNTGG	1 cut(s)	541
VpaK11BI	GGWCC	3 cut(s)	518, 646, 916
VspI	ATTAAT	1 cut(s)	164
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	1 cut(s)	726
XcmI	CCANNNNNNNNNTGG	1 cut(s)	595
XspI	CTAG	2 cut(s)	419, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.