Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011421

Physical Location & Seq

Genomic Coordinates Reverse (-)

21444732 .. 21445519

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g26780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTTGGTTGGCGACATGGGAAGACATCACAAATATCCAATGCCATCTCAATAGTGGAACTCTTGGTGCATATGGATTGTGAAGGATGCGAAAAGAGGATACGCCGAGCAATTTCAAAAATAGATGGTGTGGATAGTTTGGATATCGACATGGATAAGCAGAAGGTAACGGTGACTGGATATGTGGATCAAAGGAAGGTGTTGAAGGTGGTGAGACGAACAGGAAGAAAGGCTGAGTTTTGGCCATTTCCATACGACTCAGAATACTATCCCTACGCAGCTCAATACTTAGACGAGTCTACCTACTCGTCTTCGTATAACTACTACATGCACGGCTATAACGAAACCGTGCATGGCTACTTCCCTGATCCTTTGTATTCCACTGTTTCTGATCAAACCGTTCACCTCTTTAGTGATGACAATGTCCATGCTTACTGCACCCTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

150

Amino Acids

17.37

Weight (kDa)

5.82

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	23 - 77	6.2e-17	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56891 AT3G56891
fragaria_vesca	FvH4_2g26780
malus_domestica	MD03G1023000.v1.1
prunus_persica	Prupe.7G025000_v2.0.a1
pyrus_communis	pycom03g01930
rosa_chinensis	RchiOBHm_Chr3g0495281
rosa_laevigata	RLG00000022631
rosa_multiflora	Rmu_co8042714.1_g000001 Rmu_sc0002433.1_g000005 Rmu_sc0002433.1_g000007
rosa_roxburghii	Rroxscaffold_6G00390640
rosa_rugosa	Rorug03G0272000 Rorug03G0272100 Rorug03G0272200
rosa_samantha	Rh3AG320400 Rh3BG355200 Rh3CG352200 Rh3DG354300
rosa_wichuraiana	Rw3G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	299
AclWI	GGATC	2 cut(s)	195, 362
AcoI	YGGCCR	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	117, 205
AluBI	AGCT	1 cut(s)	281
AluI	AGCT	1 cut(s)	281
Alw26I	GTCTC	1 cut(s)	208
AlwI	GGATC	2 cut(s)	195, 362
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	278
AsuHPI	GGTGA	3 cut(s)	184, 223, 395
BalI	TGGCCA	1 cut(s)	244
BbsI	GAAGAC	2 cut(s)	29, 303
BbvI	GCAGC	1 cut(s)	290
BccI	CCATC	2 cut(s)	53, 119
BceAI	ACGGC	1 cut(s)	349
BciVI	GTATCC	1 cut(s)	93
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	93
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
BmsI	GCATC	1 cut(s)	77
BpiI	GAAGAC	2 cut(s)	29, 303
Bse1I	ACTGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	92
BseMII	CTCAG	2 cut(s)	225, 273
BseNI	ACTGG	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	421
BshFI	GGCC	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	208
BsmBI	CGTCTC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	187, 367, 391
BspANI	GGCC	1 cut(s)	244
BspCNI	CTCAG	2 cut(s)	226, 272
BspPI	GGATC	2 cut(s)	195, 362
BsrI	ACTGG	1 cut(s)	181
BssMI	GATC	3 cut(s)	187, 367, 391
Bst4CI	ACNGT	4 cut(s)	172, 349, 385, 400
BstDEI	CTNAG	3 cut(s)	234, 259, 289
BstF5I	GGATG	1 cut(s)	92
BstKTI	GATC	3 cut(s)	190, 370, 394
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	3 cut(s)	187, 367, 391
BstNSI	RCATGY	1 cut(s)	331
BstV1I	GCAGC	1 cut(s)	290
BstV2I	GAAGAC	2 cut(s)	29, 303
BsuI	GTATCC	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	92
BtsIMutI	CAGTG	1 cut(s)	381
CviAII	CATG	5 cut(s)	17, 151, 328, 353, 428
CviJI	RGCY	5 cut(s)	233, 244, 281, 336, 357
CviKI_1	RGCY	5 cut(s)	233, 244, 281, 336, 357
DdeI	CTNAG	3 cut(s)	234, 259, 289
DpnI	GATC	3 cut(s)	189, 369, 393
DpnII	GATC	3 cut(s)	187, 367, 391
EaeI	YGGCCR	1 cut(s)	242
Eco32I	GATATC	1 cut(s)	145
EcoRV	GATATC	1 cut(s)	145
Esp3I	CGTCTC	1 cut(s)	208
FaeI	CATG	5 cut(s)	20, 154, 331, 356, 431
FatI	CATG	5 cut(s)	16, 150, 327, 352, 427
FauNDI	CATATG	1 cut(s)	72
FbaI	TGATCA	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	299
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	279
GluI	GCNGC	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	244
Hin1II	CATG	5 cut(s)	20, 154, 331, 356, 431
HinfI	GANTC	2 cut(s)	257, 296
HphI	GGTGA	3 cut(s)	184, 223, 395
Hpy166II	GTNNAC	2 cut(s)	300, 403
Hpy188I	TCNGA	2 cut(s)	262, 391
Hpy8I	GTNNAC	2 cut(s)	300, 403
HpyAV	CCTTC	4 cut(s)	77, 157, 190, 199
HpyCH4III	ACNGT	4 cut(s)	172, 349, 385, 400
HpyCH4V	TGCA	4 cut(s)	70, 331, 352, 438
HpyF3I	CTNAG	3 cut(s)	234, 259, 289
Hsp92II	CATG	5 cut(s)	20, 154, 331, 356, 431
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	187, 367, 391
LpnPI	CCDG	3 cut(s)	162, 207, 378
Lsp1109I	GCAGC	1 cut(s)	290
LweI	GCATC	1 cut(s)	77
MaeIII	GTNAC	2 cut(s)	166, 172
MalI	GATC	3 cut(s)	189, 369, 393
MboI	GATC	3 cut(s)	187, 367, 391
MboII	GAAGA	3 cut(s)	34, 237, 303
MlsI	TGGCCA	1 cut(s)	244
MluCI	AATT	1 cut(s)	111
MluNI	TGGCCA	1 cut(s)	244
MlyI	GAGTC	2 cut(s)	251, 305
MnlI	CCTC	2 cut(s)	90, 416
Mox20I	TGGCCA	1 cut(s)	244
MscI	TGGCCA	1 cut(s)	244
MslI	CAYNNNNRTG	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	244
NdeI	CATATG	1 cut(s)	72
NdeII	GATC	3 cut(s)	187, 367, 391
NlaIII	CATG	5 cut(s)	20, 154, 331, 356, 431
NmeAIII	GCCGAG	1 cut(s)	131
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PflFI	GACNNNGTC	1 cut(s)	422
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	2 cut(s)	251, 304
PpsI	GAGTC	2 cut(s)	251, 304
PsyI	GACNNNGTC	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	443
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	3 cut(s)	187, 367, 391
SchI	GAGTC	2 cut(s)	251, 305
SetI	ASST	6 cut(s)	168, 201, 210, 283, 305, 408
SfaNI	GCATC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	443
Sse9I	AATT	1 cut(s)	111
TaaI	ACNGT	4 cut(s)	172, 349, 385, 400
TaqI	TCGA	1 cut(s)	147
TasI	AATT	1 cut(s)	111
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	172
TspRI	CASTG	1 cut(s)	388
Tth111I	GACNNNGTC	1 cut(s)	422
XceI	RCATGY	1 cut(s)	331
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.