Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002433.1

Orthogroup ID

OG0011421

Physical Location & Seq

Genomic Coordinates Reverse (-)

57384 .. 62615

Gene Structure 5232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002433.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggctaaatttcatgattttggttggagaaatggaaagagggaaggaagaggagaaaatctggaaattttggtgaggagagtggttccggcgacggcggccggcggcggagcggtggtggcgtctggcggtggcggcgatttccggtggaggctagagagagaggctctcggtgtggatagcttggaaatagatatggataagcaaaaggtgacagtgaccggatatgtggatcaaaggaaagtgttgaaggtggtgagacgaacgggaaggaaagccgagttttggccatttccatatgactccgaatactatccctacgcatctcaatacttcgacgagtcaacctactcgtcatcgtataactactacatgcacggctataatgaagccattcatggatatttccctgaccctctgtattcgactgtatctgatcaaactgttcatcttttcagtgatgacaatgttcatgcatattgcaccgttatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

164

Amino Acids

18.75

Weight (kDa)

5.94

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56891 AT3G56891
fragaria_vesca	FvH4_2g26780
malus_domestica	MD03G1023000.v1.1
prunus_persica	Prupe.7G025000_v2.0.a1
pyrus_communis	pycom03g01930
rosa_chinensis	RchiOBHm_Chr3g0495281
rosa_laevigata	RLG00000022631
rosa_multiflora	Rmu_co8042714.1_g000001 Rmu_sc0002433.1_g000005 Rmu_sc0002433.1_g000007
rosa_roxburghii	Rroxscaffold_6G00390640
rosa_rugosa	Rorug03G0272000 Rorug03G0272100 Rorug03G0272200
rosa_samantha	Rh3AG320400 Rh3BG355200 Rh3CG352200 Rh3DG354300
rosa_wichuraiana	Rw3G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	113
AciI	CCGC	6 cut(s)	98, 105, 108, 113, 129, 135
AclWI	GGATC	1 cut(s)	240
AcoI	YGGCCR	2 cut(s)	99, 287
AcsI	RAATTY	2 cut(s)	8, 66
AcyI	GRCGYC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	285
AgsI	TTSAA	1 cut(s)	250
AluBI	AGCT	1 cut(s)	183
AluI	AGCT	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	1 cut(s)	240
AoxI	GGCC	2 cut(s)	99, 287
ApoI	RAATTY	2 cut(s)	8, 66
Asp700I	GAANNNNTTC	1 cut(s)	393
AsuHPI	GGTGA	3 cut(s)	85, 223, 268
BalI	TGGCCA	1 cut(s)	289
BceAI	ACGGC	2 cut(s)	111, 394
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	1 cut(s)	155
BisI	GCNGC	3 cut(s)	99, 106, 136
BlsI	GCNGC	3 cut(s)	100, 107, 137
BmiI	GGNNCC	1 cut(s)	87
BmsI	GCATC	1 cut(s)	332
BplI	GAGNNNNNCTC	4 cut(s)	151, 183, 153, 185
BsaHI	GRCGYC	1 cut(s)	122
BsaWI	WCCGGW	2 cut(s)	144, 221
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse118I	RCCGGY	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseRI	GAGGAG	2 cut(s)	66, 91
BseX3I	CGGCCG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	101, 289
BsiEI	CGRYCG	1 cut(s)	102
BsiSI	CCGG	4 cut(s)	89, 102, 145, 222
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	253
BsmBI	CGTCTC	1 cut(s)	253
BsnI	GGCC	2 cut(s)	101, 289
Bsp143I	GATC	2 cut(s)	232, 436
BspACI	CCGC	6 cut(s)	98, 105, 108, 113, 129, 135
BspANI	GGCC	2 cut(s)	101, 289
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	240
BsrBI	CCGCTC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssMI	GATC	2 cut(s)	232, 436
BssNI	GRCGYC	1 cut(s)	122
Bst4CI	ACNGT	4 cut(s)	217, 430, 445, 487
Bst6I	CTCTTC	1 cut(s)	43
BstACI	GRCGYC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	103
BstKTI	GATC	2 cut(s)	235, 439
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	2 cut(s)	232, 436
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 119, 135
BstNSI	RCATGY	1 cut(s)	376
BstZI	CGGCCG	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	101, 289
BtsIMutI	CAGTG	2 cut(s)	222, 463
Cac8I	GCNNGC	1 cut(s)	103
CciI	TCATGA	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	101
CseI	GACGC	1 cut(s)	111
CviAII	CATG	4 cut(s)	14, 373, 398, 473
CviJI	RGCY	9 cut(s)	5, 101, 154, 167, 183, 278, 289, 381, 392
CviKI_1	RGCY	9 cut(s)	5, 101, 154, 167, 183, 278, 289, 381, 392
DpnI	GATC	2 cut(s)	234, 438
DpnII	GATC	2 cut(s)	232, 436
EaeI	YGGCCR	2 cut(s)	99, 287
EagI	CGGCCG	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	123
EclXI	CGGCCG	1 cut(s)	99
Eco52I	CGGCCG	1 cut(s)	99
EcoT22I	ATGCAT	1 cut(s)	478
Esp3I	CGTCTC	1 cut(s)	253
FaeI	CATG	4 cut(s)	17, 376, 401, 476
FatI	CATG	4 cut(s)	13, 372, 397, 472
FauNDI	CATATG	1 cut(s)	298
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	3 cut(s)	99, 106, 136
Fsp4HI	GCNGC	3 cut(s)	99, 106, 136
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	3 cut(s)	99, 106, 136
HaeIII	GGCC	2 cut(s)	101, 289
HapII	CCGG	4 cut(s)	89, 102, 145, 222
HgaI	GACGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	4 cut(s)	17, 376, 401, 476
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HinfI	GANTC	2 cut(s)	302, 341
HpaII	CCGG	4 cut(s)	89, 102, 145, 222
HphI	GGTGA	3 cut(s)	85, 223, 268
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188I	TCNGA	2 cut(s)	307, 436
Hpy188III	TCNNGA	2 cut(s)	14, 62
Hpy8I	GTNNAC	1 cut(s)	345
Hpy99I	CGWCG	2 cut(s)	97, 341
HpyAV	CCTTC	3 cut(s)	38, 244, 264
HpyCH4III	ACNGT	4 cut(s)	217, 430, 445, 487
HpyCH4V	TGCA	3 cut(s)	376, 476, 483
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 119, 135
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	4 cut(s)	17, 376, 401, 476
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	232, 436
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	7 cut(s)	47, 102, 111, 115, 158, 235, 423
LweI	GCATC	1 cut(s)	332
MaeI	CTAG	1 cut(s)	155
MaeIII	GTNAC	2 cut(s)	211, 217
MalI	GATC	2 cut(s)	234, 438
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	2 cut(s)	232, 436
MboII	GAAGA	1 cut(s)	60
MlsI	TGGCCA	1 cut(s)	289
MluCI	AATT	2 cut(s)	8, 66
MluNI	TGGCCA	1 cut(s)	289
MlyI	GAGTC	2 cut(s)	296, 350
MmeI	TCCRAC	1 cut(s)	5
MnlI	CCTC	6 cut(s)	33, 44, 69, 144, 157, 426
Mox20I	TGGCCA	1 cut(s)	289
Mph1103I	ATGCAT	1 cut(s)	478
MroNI	GCCGGC	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	289
MslI	CAYNNNNRTG	1 cut(s)	488
Msp20I	TGGCCA	1 cut(s)	289
MspI	CCGG	4 cut(s)	89, 102, 145, 222
MwoI	GCNNNNNNNGC	3 cut(s)	98, 119, 135
NaeI	GCCGGC	1 cut(s)	103
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	2 cut(s)	232, 436
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	4 cut(s)	17, 376, 401, 476
NlaIV	GGNNCC	1 cut(s)	87
NmeAIII	GCCGAG	1 cut(s)	304
NmuCI	GTSAC	2 cut(s)	211, 217
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	1 cut(s)	376
PagI	TCATGA	1 cut(s)	13
PdiI	GCCGGC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	393
PkrI	GCNGC	3 cut(s)	100, 107, 137
PleI	GAGTC	2 cut(s)	296, 349
PpsI	GAGTC	2 cut(s)	296, 349
PspN4I	GGNNCC	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	488
SatI	GCNGC	3 cut(s)	99, 106, 136
Sau3AI	GATC	2 cut(s)	232, 436
SchI	GAGTC	2 cut(s)	296, 350
SetI	ASST	4 cut(s)	185, 213, 255, 350
SfaNI	GCATC	1 cut(s)	332
SmiMI	CAYNNNNRTG	1 cut(s)	488
Sse9I	AATT	2 cut(s)	8, 66
SsiI	CCGC	6 cut(s)	98, 105, 108, 113, 129, 135
SspMI	CTAG	1 cut(s)	155
TaaI	ACNGT	4 cut(s)	217, 430, 445, 487
TaqI	TCGA	2 cut(s)	336, 425
TasI	AATT	2 cut(s)	8, 66
TauI	GCSGC	3 cut(s)	101, 108, 138
TscAI	CASTG	2 cut(s)	222, 463
TseFI	GTSAC	2 cut(s)	211, 217
Tsp45I	GTSAC	2 cut(s)	211, 217
TspDTI	ATGAA	4 cut(s)	386, 402, 437, 461
TspRI	CASTG	2 cut(s)	222, 463
XapI	RAATTY	2 cut(s)	8, 66
XceI	RCATGY	1 cut(s)	376
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	1 cut(s)	155
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.