Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0011421

Physical Location & Seq

Genomic Coordinates Reverse (-)

1822987 .. 1824048

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1023000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTTGGTTGGCGAAATGGGAAGTCTAAACACTTATCTAAGGCCATGTCTATTGTGGAACTTTTGGTGCATATGGATTGCGAAGGATGCGAAAAAAGGATAAGAAGAGCAATTTCAAAAATAGAGGGTGTGGATAGCTTGGAAATAGACATGGATACACAAAAGGTGACGGTGACGGGGTATGTAGATCAAAGGAAGGTGTTAAAGGTTGTGAGAAGAACAGGGAGGAGGGCTGAATTTTGGCCCTTCCCATACGACAGCGAATACTATCCGTACGCATCTCAATACTTTGACGAGTCTACATATTCGTCTTCCTACAACTACTACATGCATGGCTATAACGAAGGCGTGCACGGATACTTCCCCGACCAGTTATACTCAACCGTTGCTGATAATACTGTACATCTCTTTAGTGACGACAATGTTCATGCCTACTGCACCCTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

150

Amino Acids

17.45

Weight (kDa)

6.05

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	23 - 76	7.6e-17	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56891 AT3G56891
fragaria_vesca	FvH4_2g26780
malus_domestica	MD03G1023000.v1.1
prunus_persica	Prupe.7G025000_v2.0.a1
pyrus_communis	pycom03g01930
rosa_chinensis	RchiOBHm_Chr3g0495281
rosa_laevigata	RLG00000022631
rosa_multiflora	Rmu_co8042714.1_g000001 Rmu_sc0002433.1_g000005 Rmu_sc0002433.1_g000007
rosa_roxburghii	Rroxscaffold_6G00390640
rosa_rugosa	Rorug03G0272000 Rorug03G0272100 Rorug03G0272200
rosa_samantha	Rh3AG320400 Rh3BG355200 Rh3CG352200 Rh3DG354300
rosa_wichuraiana	Rw3G027970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	2 cut(s)	275, 402
AgsI	TTSAA	1 cut(s)	117
AluBI	AGCT	1 cut(s)	138
AluI	AGCT	1 cut(s)	138
Alw21I	GWGCWC	1 cut(s)	354
Alw44I	GTGCAC	1 cut(s)	350
AoxI	GGCC	2 cut(s)	42, 242
ApaLI	GTGCAC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	2 cut(s)	178, 184
BaeGI	GKGCMC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	354
BciVI	GTATCC	2 cut(s)	148, 350
BfuI	GTATCC	2 cut(s)	148, 350
BmgT120I	GGNCC	1 cut(s)	243
BmsI	GCATC	2 cut(s)	77, 287
BpiI	GAAGAC	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	370
BseGI	GGATG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	354
BsgI	GTGCAG	1 cut(s)	421
BshFI	GGCC	2 cut(s)	44, 244
BsiHKAI	GWGCWC	1 cut(s)	354
BsiWI	CGTACG	1 cut(s)	273
BsnI	GGCC	2 cut(s)	44, 244
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp1407I	TGTACA	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	187
BspANI	GGCC	2 cut(s)	44, 244
BspQI	GCTCTTC	1 cut(s)	100
BsrGI	TGTACA	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	370
BssMI	GATC	1 cut(s)	187
Bst4CI	ACNGT	3 cut(s)	172, 385, 400
Bst6I	CTCTTC	1 cut(s)	100
BstAUI	TGTACA	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	92
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	331
BstSLI	GKGCMC	1 cut(s)	354
BstV2I	GAAGAC	1 cut(s)	303
BsuI	GTATCC	2 cut(s)	148, 350
BsuRI	GGCC	2 cut(s)	44, 244
BtsCI	GGATG	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	274, 401
CviAII	CATG	5 cut(s)	46, 151, 328, 332, 428
CviJI	RGCY	5 cut(s)	44, 138, 233, 244, 336
CviKI_1	RGCY	5 cut(s)	44, 138, 233, 244, 336
CviQI	GTAC	2 cut(s)	274, 401
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	333
FaeI	CATG	5 cut(s)	49, 154, 331, 335, 431
FatI	CATG	5 cut(s)	45, 150, 327, 331, 427
FauNDI	CATATG	1 cut(s)	72
FblI	GTMKAC	1 cut(s)	299
FokI	GGATG	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	44, 244
Hin1II	CATG	5 cut(s)	49, 154, 331, 335, 431
HinfI	GANTC	1 cut(s)	296
HphI	GGTGA	2 cut(s)	178, 184
Hpy166II	GTNNAC	2 cut(s)	300, 352
Hpy8I	GTNNAC	2 cut(s)	300, 352
HpyAV	CCTTC	4 cut(s)	77, 190, 256, 338
HpyCH4III	ACNGT	3 cut(s)	172, 385, 400
HpyCH4V	TGCA	4 cut(s)	70, 331, 352, 438
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
HpyF3I	CTNAG	1 cut(s)	39
Hsp92II	CATG	5 cut(s)	49, 154, 331, 335, 431
Kzo9I	GATC	1 cut(s)	187
LguI	GCTCTTC	1 cut(s)	100
LpnPI	CCDG	2 cut(s)	207, 383
LweI	GCATC	2 cut(s)	77, 287
MaeIII	GTNAC	3 cut(s)	166, 172, 413
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	3 cut(s)	117, 228, 303
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	2 cut(s)	111, 236
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	3 cut(s)	118, 219, 222
Mph1103I	ATGCAT	1 cut(s)	333
MseI	TTAA	1 cut(s)	203
MslI	CAYNNNNRTG	1 cut(s)	443
MwoI	GCNNNNNNNGC	1 cut(s)	87
NdeI	CATATG	1 cut(s)	72
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	5 cut(s)	49, 154, 331, 335, 431
NmuCI	GTSAC	3 cut(s)	166, 172, 413
NsiI	ATGCAT	1 cut(s)	333
NspI	RCATGY	1 cut(s)	331
PciSI	GCTCTTC	1 cut(s)	100
Pfl23II	CGTACG	1 cut(s)	273
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PspLI	CGTACG	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	243
RsaI	GTAC	2 cut(s)	275, 402
RsaNI	GTAC	2 cut(s)	274, 401
RseI	CAYNNNNRTG	1 cut(s)	443
SapI	GCTCTTC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	203
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	354
SetI	ASST	4 cut(s)	140, 168, 201, 210
SfaNI	GCATC	2 cut(s)	77, 287
SmiMI	CAYNNNNRTG	1 cut(s)	443
Sse9I	AATT	2 cut(s)	111, 236
TaaI	ACNGT	3 cut(s)	172, 385, 400
TasI	AATT	2 cut(s)	111, 236
TatI	WGTACW	1 cut(s)	400
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TseFI	GTSAC	3 cut(s)	166, 172, 413
Tsp45I	GTSAC	3 cut(s)	166, 172, 413
TspDTI	ATGAA	1 cut(s)	416
TspGWI	ACGGA	2 cut(s)	261, 369
VneI	GTGCAC	1 cut(s)	350
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	1 cut(s)	331
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.