Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009754

Physical Location & Seq

Genomic Coordinates Forward (+)

21233472 .. 21235978

Gene Structure 2507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G57390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGGAGAGGAAGGATTGAGATTAAGAAGATTGAGAATATCAACAGTCGTCAAGTCACTTTCTCTAAGAGACGAAACGGTTTGATCAAGAAGGCTAAAGAGCTTTCGATTCTCTGTGACGCCGAGGTTGCTCTTATCATCTTCTCCAGCACCGGCAAGATTTACGATTTCTCCAGCGTCTGTATGGAGCAAATTCTTTCTAGATATGGATACACTACTGCGTCCACTGAGCATAAACAACAAAGAGAACACCAACTTCTAATTTGTGCTTCACATGGAAATGAAGCTGTGTTGCGAAATGATGATTCTATGAAGGGGGAACTTGAAAGATTACAGCTTGCAATTGAGAGACTTAAGGGTAAGGAGCTTGAAGGTATGAGTTTCCCGGATCTTATTTCTCTTGAAAACCAGTTGAACGAGAGCTTGCATAGTGTCAAGGATCAAAAGACACAAATCCTGCTCAACCAGATTGAGAGATCCAGGATACAGGAGAAAAAAGCATTGGAAGAAAACCAAATCTTGCGCAAACAGGTTGAGATGTTGGGGAGAGGTTCAGGACCAAAAGTGTTGAATGAAAGGCCTCAAGATTCTAGCCCAGAAGCCGATCCCGAGAGCTCTTCATCAGAAGAGGATGAGAATGACAACGAGGAGCACCATTCCGACACTTCCTTGCAGTTGGGGTTGTCGTCGACGGGGTATTGCACAAAGAGAAAGAAGCCGAAGATCGAACTGGTCTGCGATAACTCTGGGAGTCAAGTGGCTTCTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048519 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

256

Amino Acids

28.87

Weight (kDa)

5.81

Isoelectric Point (pI)

58.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.3e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	95 - 179	2.2e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57390 AT3G57390 AT3G57390
fragaria_vesca	FvH4_4g20680 FvH4_4g20680
malus_domestica	MD00G1106300.v1.1
prunus_persica	Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1
pyrus_communis	pycom14g06350
rosa_chinensis	RchiOBHm_Chr3g0483031
rosa_laevigata	RLG00000023305
rosa_multiflora	Rmu_sc0000441.1_g000133
rosa_roxburghii	Rroxscaffold_6G00398700
rosa_rugosa	Rorug03G0203800 Rorug03G0203900
rosa_samantha	Rh3AG251800 Rh3BG288400 Rh3CG286000 Rh3DG281600
rosa_wichuraiana	Rw3G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	524
AccI	GTMKAC	1 cut(s)	689
AclWI	GGATC	4 cut(s)	396, 447, 471, 599
AcsI	RAATTY	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	120
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	5 cut(s)	326, 371, 404, 415, 571
AjnI	CCWGG	1 cut(s)	479
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
AluBI	AGCT	6 cut(s)	103, 287, 337, 367, 423, 615
AluI	AGCT	6 cut(s)	103, 287, 337, 367, 423, 615
Alw21I	GWGCWC	2 cut(s)	617, 654
Alw26I	GTCTC	2 cut(s)	64, 343
AlwI	GGATC	4 cut(s)	396, 447, 471, 599
AlwNI	CAGNNNCTG	1 cut(s)	180
Ama87I	CYCGRG	1 cut(s)	608
AoxI	GGCC	1 cut(s)	578
ApoI	RAATTY	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	525
AspS9I	GGNCC	1 cut(s)	557
AsuC2I	CCSGG	1 cut(s)	386
AvaI	CYCGRG	1 cut(s)	608
AvaII	GGWCC	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	617
Bbv12I	GWGCWC	2 cut(s)	617, 654
BciT130I	CCWGG	1 cut(s)	481
BciVI	GTATCC	2 cut(s)	203, 477
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	2 cut(s)	64, 343
BfaI	CTAG	2 cut(s)	201, 591
BfrI	CTTAAG	1 cut(s)	353
BfuI	GTATCC	2 cut(s)	203, 477
Bme1390I	CCNGG	2 cut(s)	386, 481
Bme18I	GGWCC	1 cut(s)	557
BmeT110I	CYCGRG	1 cut(s)	608
BmgT120I	GGNCC	1 cut(s)	557
BmrFI	CCNGG	2 cut(s)	386, 481
BpmI	CTGGAG	2 cut(s)	130, 157
BpuEI	CTTGAG	1 cut(s)	567
BpuMI	CCSGG	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	409, 735
BseBI	CCWGG	1 cut(s)	481
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	637
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	2 cut(s)	409, 735
BseRI	GAGGAG	1 cut(s)	662
BshFI	GGCC	1 cut(s)	580
BsiHKAI	GWGCWC	2 cut(s)	617, 654
BsiHKCI	CYCGRG	1 cut(s)	608
BsiSI	CCGG	2 cut(s)	153, 386
BsmAI	GTCTC	2 cut(s)	64, 343
BsmBI	CGTCTC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	580
BsoBI	CYCGRG	1 cut(s)	608
Bsp1286I	GDGCHC	2 cut(s)	617, 654
Bsp143I	GATC	6 cut(s)	84, 388, 439, 476, 604, 723
BspANI	GGCC	1 cut(s)	580
BspCNI	CTCAG	1 cut(s)	220
BspPI	GGATC	4 cut(s)	396, 447, 471, 599
BspQI	GCTCTTC	1 cut(s)	622
BspTI	CTTAAG	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	409, 735
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	6 cut(s)	84, 388, 439, 476, 604, 723
BssNI	GRCGYC	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	2 cut(s)	47, 80
Bst6I	CTCTTC	2 cut(s)	621, 622
BstACI	GRCGYC	1 cut(s)	120
BstAFI	CTTAAG	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	339, 425
BstDEI	CTNAG	2 cut(s)	66, 228
BstF5I	GGATG	1 cut(s)	637
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	6 cut(s)	87, 391, 442, 479, 607, 726
BstMAI	GTCTC	2 cut(s)	64, 343
BstMBI	GATC	6 cut(s)	84, 388, 439, 476, 604, 723
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	481
BstSCI	CCNGG	2 cut(s)	384, 479
BstX2I	RGATCY	2 cut(s)	388, 476
BstYI	RGATCY	2 cut(s)	388, 476
BsuI	GTATCC	2 cut(s)	203, 477
BsuRI	GGCC	1 cut(s)	580
BtsCI	GGATG	1 cut(s)	637
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	339, 425
CaiI	CAGNNNCTG	1 cut(s)	180
CfoI	GCGC	1 cut(s)	525
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	557
CseI	GACGC	3 cut(s)	128, 166, 210
CviAII	CATG	1 cut(s)	275
DdeI	CTNAG	2 cut(s)	66, 228
DpnI	GATC	6 cut(s)	86, 390, 441, 478, 606, 725
DpnII	GATC	6 cut(s)	84, 388, 439, 476, 604, 723
Eam1104I	CTCTTC	2 cut(s)	621, 622
EarI	CTCTTC	2 cut(s)	621, 622
Ecl136II	GAGCTC	1 cut(s)	615
Eco147I	AGGCCT	1 cut(s)	580
Eco24I	GRGCYC	1 cut(s)	617
Eco47I	GGWCC	1 cut(s)	557
Eco53kI	GAGCTC	1 cut(s)	615
Eco88I	CYCGRG	1 cut(s)	608
EcoICRI	GAGCTC	1 cut(s)	615
EcoRII	CCWGG	1 cut(s)	479
EcoT38I	GRGCYC	1 cut(s)	617
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	1 cut(s)	278
FaiI	YATR	7 cut(s)	185, 207, 234, 276, 311, 377, 429
FatI	CATG	1 cut(s)	274
FbaI	TGATCA	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	689
FokI	GGATG	1 cut(s)	644
FriOI	GRGCYC	1 cut(s)	617
FspBI	CTAG	2 cut(s)	201, 591
FspI	TGCGCA	1 cut(s)	524
GlaI	GCGC	1 cut(s)	524
GsuI	CTGGAG	2 cut(s)	130, 157
HaeIII	GGCC	1 cut(s)	580
HapII	CCGG	2 cut(s)	153, 386
HgaI	GACGC	3 cut(s)	128, 166, 210
HhaI	GCGC	1 cut(s)	525
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HincII	GTYRAC	1 cut(s)	690
HindII	GTYRAC	1 cut(s)	690
HinfI	GANTC	4 cut(s)	109, 305, 587, 751
HpaII	CCGG	2 cut(s)	153, 386
Hpy166II	GTNNAC	2 cut(s)	225, 690
Hpy188I	TCNGA	3 cut(s)	625, 661, 766
Hpy188III	TCNNGA	6 cut(s)	88, 201, 401, 555, 584, 608
Hpy8I	GTNNAC	2 cut(s)	225, 690
Hpy99I	CGWCG	2 cut(s)	691, 694
HpyAV	CCTTC	4 cut(s)	6, 85, 307, 365
HpyCH4III	ACNGT	2 cut(s)	47, 80
HpyCH4V	TGCA	4 cut(s)	341, 427, 673, 702
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	66, 228
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	1 cut(s)	523
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	6 cut(s)	84, 388, 439, 476, 604, 723
LguI	GCTCTTC	1 cut(s)	622
LmnI	GCTCC	3 cut(s)	187, 364, 649
MaeI	CTAG	2 cut(s)	201, 591
MaeIII	GTNAC	2 cut(s)	55, 116
MalI	GATC	6 cut(s)	86, 390, 441, 478, 606, 725
MboI	GATC	6 cut(s)	84, 388, 439, 476, 604, 723
MboII	GAAGA	6 cut(s)	40, 133, 518, 609, 638, 733
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	2 cut(s)	388, 476
MhlI	GDGCHC	2 cut(s)	617, 654
MluCI	AATT	3 cut(s)	192, 261, 342
MlyI	GAGTC	1 cut(s)	760
MmeI	TCCRAC	1 cut(s)	684
MnlI	CCTC	5 cut(s)	118, 542, 591, 622, 640
MseI	TTAA	2 cut(s)	24, 354
MslI	CAYNNNNRTG	1 cut(s)	279
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	2 cut(s)	153, 386
MspR9I	CCNGG	2 cut(s)	386, 481
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	481
MwoI	GCNNNNNNNGC	1 cut(s)	128
NciI	CCSGG	1 cut(s)	386
NdeII	GATC	6 cut(s)	84, 388, 439, 476, 604, 723
NlaIII	CATG	1 cut(s)	278
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	2 cut(s)	55, 116
NsbI	TGCGCA	1 cut(s)	524
PceI	AGGCCT	1 cut(s)	580
PciSI	GCTCTTC	1 cut(s)	622
PfeI	GAWTC	3 cut(s)	109, 305, 587
PfoI	TCCNGGA	2 cut(s)	384, 479
PleI	GAGTC	1 cut(s)	759
PpsI	GAGTC	1 cut(s)	759
Psp124BI	GAGCTC	1 cut(s)	617
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspPI	GGNCC	1 cut(s)	557
PstNI	CAGNNNCTG	1 cut(s)	180
PsuI	RGATCY	2 cut(s)	388, 476
RseI	CAYNNNNRTG	1 cut(s)	279
SacI	GAGCTC	1 cut(s)	617
SalI	GTCGAC	1 cut(s)	688
SapI	GCTCTTC	1 cut(s)	622
SaqAI	TTAA	2 cut(s)	24, 354
Sau3AI	GATC	6 cut(s)	84, 388, 439, 476, 604, 723
Sau96I	GGNCC	1 cut(s)	557
SchI	GAGTC	1 cut(s)	760
ScrFI	CCNGG	2 cut(s)	386, 481
SduI	GDGCHC	2 cut(s)	617, 654
SgrDI	CGTCGACG	1 cut(s)	688
SinI	GGWCC	1 cut(s)	557
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	2 cut(s)	353, 582
SmoI	CTYRAG	2 cut(s)	353, 582
Sse9I	AATT	3 cut(s)	192, 261, 342
SseBI	AGGCCT	1 cut(s)	580
SspMI	CTAG	2 cut(s)	201, 591
SstI	GAGCTC	1 cut(s)	617
StuI	AGGCCT	1 cut(s)	580
StyD4I	CCNGG	2 cut(s)	384, 479
TaaI	ACNGT	2 cut(s)	47, 80
TaqI	TCGA	3 cut(s)	107, 689, 726
TasI	AATT	3 cut(s)	192, 261, 342
TfiI	GAWTC	3 cut(s)	109, 305, 587
Tru1I	TTAA	2 cut(s)	24, 354
Tru9I	TTAA	2 cut(s)	24, 354
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	2 cut(s)	55, 116
Tsp45I	GTSAC	2 cut(s)	55, 116
TspDTI	ATGAA	4 cut(s)	297, 326, 588, 609
TspRI	CASTG	1 cut(s)	232
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	1 cut(s)	192
XbaI	TCTAGA	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	689
XspI	CTAG	2 cut(s)	201, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.