Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009754

Physical Location & Seq

Genomic Coordinates Reverse (-)

18103140 .. 18103682

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0203900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAAACCAGAAAGAAAATTCTCATTGATGTTTTGCCAGCAGATGAGGCCTGGCGTCTGTTTAAGAATATGGCTGGAGGTTCCATTGAATCTGATTCCCAGCTGAAGGACATAGCAGAAGAGGTTCTGAAGGAGTGTGGTGGGTTGCCACTTGCAATTTCTACTCTTGGAATGGCACTACGAGACAAAGAGAAATCCATTTGGAATGATGCACTCAGACGACTAAGAAAGCCTTTCCCAGCACTCAGACTAGGAATGGATAAGAAGGTGTATGAACCAATAAAGTTGAGTTATGACATTTTGGAAGGGGAAGTCAAATCTTGTTTTTTGCTCTGCTGCTTATTTCCAGAAAGCAGTGATATATTGCTTCAAGATTTAGTTATATATGGGATTGGGCTTGGGCTCTTTCGAGGCATTGATTCAATAGAAGAGGGAAGAAACCTTGTAAAAGCATTGGTGGACACACTCAAAAGTTGTCATTTGTTGGTGGGCCCATACTGTCATCACTCCCGCTTTTCGAAAACCTTCGAGTGCTGTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048519 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

180

Amino Acids

20.25

Weight (kDa)

6.32

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57390 AT3G57390 AT3G57390
fragaria_vesca	FvH4_4g20680 FvH4_4g20680
malus_domestica	MD00G1106300.v1.1
prunus_persica	Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1
pyrus_communis	pycom14g06350
rosa_chinensis	RchiOBHm_Chr3g0483031
rosa_laevigata	RLG00000023305
rosa_multiflora	Rmu_sc0000441.1_g000133
rosa_roxburghii	Rroxscaffold_6G00398700
rosa_rugosa	Rorug03G0203800 Rorug03G0203900
rosa_samantha	Rh3AG251800 Rh3BG288400 Rh3CG286000 Rh3DG281600
rosa_wichuraiana	Rw3G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	511
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	2 cut(s)	125, 149
AcyI	GRCGYC	1 cut(s)	55
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	3 cut(s)	89, 371, 423
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	177
AoxI	GGCC	2 cut(s)	48, 490
ApaI	GGGCCC	1 cut(s)	494
ApeKI	GCWGC	1 cut(s)	336
ApoI	RAATTY	1 cut(s)	18
Asp700I	GAANNNNTTC	2 cut(s)	123, 524
AspS9I	GGNCC	2 cut(s)	490, 491
AsuII	TTCGAA	1 cut(s)	518
BaeGI	GKGCMC	1 cut(s)	494
BanII	GRGCYC	2 cut(s)	405, 494
BbvI	GCAGC	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	2 cut(s)	251, 541
BisI	GCNGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	338
Bme1390I	CCNGG	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	490, 491
BmiI	GGNNCC	2 cut(s)	82, 492
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	199
BpmI	CTGGAG	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	518
BsaHI	GRCGYC	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	2 cut(s)	229, 259
BseSI	GKGCMC	1 cut(s)	494
BseXI	GCAGC	1 cut(s)	323
BseYI	CCCAGC	2 cut(s)	99, 238
BshFI	GGCC	2 cut(s)	50, 492
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	50, 492
Bsp119I	TTCGAA	1 cut(s)	518
Bsp120I	GGGCCC	1 cut(s)	490
Bsp1286I	GDGCHC	2 cut(s)	405, 494
BspACI	CCGC	1 cut(s)	511
BspANI	GGCC	2 cut(s)	50, 492
BspCNI	CTCAG	2 cut(s)	228, 258
BspLI	GGNNCC	2 cut(s)	82, 492
BspT104I	TTCGAA	1 cut(s)	518
BssNI	GRCGYC	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	500
Bst6I	CTCTTC	2 cut(s)	114, 423
BstACI	GRCGYC	1 cut(s)	55
BstBI	TTCGAA	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	215, 224, 245
BstMAI	GTCTC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	494
BstV1I	GCAGC	1 cut(s)	323
BsuRI	GGCC	2 cut(s)	50, 492
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	39
Cfr13I	GGNCC	2 cut(s)	490, 491
CseI	GACGC	1 cut(s)	44
CviJI	RGCY	7 cut(s)	50, 74, 103, 232, 397, 403, 492
CviKI_1	RGCY	7 cut(s)	50, 74, 103, 232, 397, 403, 492
DdeI	CTNAG	3 cut(s)	215, 224, 245
Eam1104I	CTCTTC	2 cut(s)	114, 423
EarI	CTCTTC	2 cut(s)	114, 423
Eco147I	AGGCCT	1 cut(s)	50
Eco24I	GRGCYC	2 cut(s)	405, 494
Eco57I	CTGAAG	2 cut(s)	125, 149
EcoRII	CCWGG	1 cut(s)	50
EcoT38I	GRGCYC	2 cut(s)	405, 494
FaiI	YATR	9 cut(s)	71, 113, 273, 294, 362, 383, 385, 387, 496
FalI	AAGNNNNNCTT	2 cut(s)	217, 249
FauI	CCCGC	1 cut(s)	518
Fnu4HI	GCNGC	1 cut(s)	337
FriOI	GRGCYC	2 cut(s)	405, 494
Fsp4HI	GCNGC	1 cut(s)	337
FspBI	CTAG	2 cut(s)	251, 541
GluI	GCNGC	1 cut(s)	337
GsaI	CCCAGC	2 cut(s)	103, 242
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	50, 492
HgaI	GACGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	55
HinfI	GANTC	3 cut(s)	89, 95, 419
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	4 cut(s)	94, 129, 218, 248
Hpy188III	TCNNGA	2 cut(s)	347, 371
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	5 cut(s)	100, 124, 259, 299, 535
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4V	TGCA	2 cut(s)	155, 212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	3 cut(s)	215, 224, 245
Hsp92I	GRCGYC	1 cut(s)	55
LpnPI	CCDG	8 cut(s)	22, 37, 51, 60, 64, 113, 252, 360
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	2 cut(s)	251, 541
MboII	GAAGA	3 cut(s)	131, 440, 447
MhlI	GDGCHC	2 cut(s)	405, 494
MluCI	AATT	2 cut(s)	18, 156
MnlI	CCTC	5 cut(s)	40, 71, 115, 404, 424
MroXI	GAANNNNTTC	2 cut(s)	123, 524
MseI	TTAA	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	47
NlaIV	GGNNCC	2 cut(s)	82, 492
NspV	TTCGAA	1 cut(s)	518
PceI	AGGCCT	1 cut(s)	50
PdmI	GAANNNNTTC	2 cut(s)	123, 524
PfeI	GAWTC	3 cut(s)	89, 95, 419
PkrI	GCNGC	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	50
PspFI	CCCAGC	2 cut(s)	99, 238
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	82, 492
PspOMI	GGGCCC	1 cut(s)	490
PspPI	GGNCC	2 cut(s)	490, 491
PvuII	CAGCTG	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	337
Sau96I	GGNCC	2 cut(s)	490, 491
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	2 cut(s)	405, 494
SetI	ASST	6 cut(s)	82, 105, 126, 270, 444, 527
SfaNI	GCATC	1 cut(s)	199
SfuI	TTCGAA	1 cut(s)	518
Sse9I	AATT	2 cut(s)	18, 156
SseBI	AGGCCT	1 cut(s)	50
SsiI	CCGC	1 cut(s)	511
SspMI	CTAG	2 cut(s)	251, 541
StuI	AGGCCT	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	500
TaqI	TCGA	3 cut(s)	409, 518, 528
TasI	AATT	2 cut(s)	18, 156
TfiI	GAWTC	3 cut(s)	89, 95, 419
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	1 cut(s)	336
TspDTI	ATGAA	1 cut(s)	288
TspRI	CASTG	1 cut(s)	361
XapI	RAATTY	1 cut(s)	18
XmnI	GAANNNNTTC	2 cut(s)	123, 524
XspI	CTAG	2 cut(s)	251, 541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.