Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009754

Physical Location & Seq

Genomic Coordinates Forward (+)

9474815 .. 9477483

Gene Structure 2669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G055900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGGAGAGGAAGGATTGAGATTAAGAAGATTGAAAATGTGAATAGCAGGCAAGTCACCTTCACGAAACGCCGTAACGGGTTGCTCAAGAAGGCCAAGGAATTGTCTGTTCTTTGTGATGCAGAGGTTGCTGTCATTGTTTTCGCCAGCACCGGAAGGCTATATGAATTCTCAAGCACCAGCATGCCACACACTCTTTTAAGATACAAGAAGGGTGGCGAGCCGAACTTTGTCCAGAAAAGAAAAGTGGAGCCGAACCGTGATGTAAATGGACCGCAGAATGAGATTGCAACACTTCGCTTGGCATGCATGCGGATGATGGGTAAGGAGTTGCACGGCTTGAGTTATAAAGAGCTGCAGCAACTGGAGGAACAACTACGTGAAGGGGTTTTATTTGTGAAGCAAAAGAAGGAGGAAATACTTTTGGAGACACTAAAGAGCTCCAGATTACTGGAACAAAGGGCTGTGGAGGAAAATGAGAATCTACGCAAACAGCTTGAGGAGATGCGGCAAACCCACAAGCCAAATTGGCAAATTGTCCCTGCATCCGATCATCCATTAGAGAGCTCAAAAGCCGTTTCGAGTTATGAACCAGACACTTATTTGCACTTGGGGTTGTCATCATCATCAGATGCTCATCATCAAAAGAGGAAGGCAGCTAAAATTGAACGAAATTCTAATGATTCAGGGAGTCAAGTGGTCTCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048519 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

237

Amino Acids

27.0

Weight (kDa)

9.5

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57390 AT3G57390 AT3G57390
fragaria_vesca	FvH4_4g20680 FvH4_4g20680
malus_domestica	MD00G1106300.v1.1
prunus_persica	Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1
pyrus_communis	pycom14g06350
rosa_chinensis	RchiOBHm_Chr3g0483031
rosa_laevigata	RLG00000023305
rosa_multiflora	Rmu_sc0000441.1_g000133
rosa_roxburghii	Rroxscaffold_6G00398700
rosa_rugosa	Rorug03G0203800 Rorug03G0203900
rosa_samantha	Rh3AG251800 Rh3BG288400 Rh3CG286000 Rh3DG281600
rosa_wichuraiana	Rw3G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
AciI	CCGC	3 cut(s)	275, 313, 508
AcsI	RAATTY	2 cut(s)	167, 673
AgsI	TTSAA	2 cut(s)	35, 668
AluBI	AGCT	5 cut(s)	355, 441, 496, 567, 659
AluI	AGCT	5 cut(s)	355, 441, 496, 567, 659
Alw21I	GWGCWC	2 cut(s)	443, 569
Alw26I	GTCTC	2 cut(s)	422, 706
AlwNI	CAGNNNCTG	1 cut(s)	364
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	3 cut(s)	355, 358, 656
ApoI	RAATTY	2 cut(s)	167, 673
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	272
BanII	GRGCYC	2 cut(s)	443, 569
Bbv12I	GWGCWC	2 cut(s)	443, 569
BbvI	GCAGC	3 cut(s)	342, 370, 668
BccI	CCATC	1 cut(s)	313
BceAI	ACGGC	3 cut(s)	57, 352, 560
BcoDI	GTCTC	2 cut(s)	422, 706
BfmI	CTRYAG	1 cut(s)	356
BglI	GCCNNNNNGGC	1 cut(s)	529
BisI	GCNGC	4 cut(s)	356, 359, 509, 657
BlsI	GCNGC	4 cut(s)	357, 360, 510, 658
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	252
BmsI	GCATC	4 cut(s)	109, 495, 554, 622
BpmI	CTGGAG	2 cut(s)	386, 427
BpuEI	CTTGAG	4 cut(s)	71, 157, 361, 518
BsaAI	YACGTR	1 cut(s)	380
BsaBI	GATNNNNATC	1 cut(s)	636
BsaI	GGTCTC	1 cut(s)	706
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	369, 456
Bse8I	GATNNNNATC	1 cut(s)	636
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	3 cut(s)	321, 545, 553
BseJI	GATNNNNATC	1 cut(s)	636
BseNI	ACTGG	2 cut(s)	369, 456
BseRI	GAGGAG	1 cut(s)	515
BseXI	GCAGC	3 cut(s)	342, 370, 668
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	2 cut(s)	443, 569
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	524
BsmAI	GTCTC	2 cut(s)	422, 706
BsmFI	GGGAC	1 cut(s)	524
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	706
Bsp1286I	GDGCHC	2 cut(s)	443, 569
Bsp143I	GATC	1 cut(s)	550
BspACI	CCGC	3 cut(s)	275, 313, 508
BspANI	GGCC	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	252
BspMAI	CTGCAG	1 cut(s)	360
BspTNI	GGTCTC	1 cut(s)	706
BsrI	ACTGG	2 cut(s)	369, 456
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	550
BssT1I	CCWWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	260
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	6 cut(s)	50, 148, 185, 221, 307, 311
BstF5I	GGATG	3 cut(s)	321, 545, 553
BstKTI	GATC	1 cut(s)	553
BstMAI	GTCTC	2 cut(s)	422, 706
BstMBI	GATC	1 cut(s)	550
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 306, 529
BstNSI	RCATGY	3 cut(s)	187, 309, 313
BstSFI	CTRYAG	1 cut(s)	356
BstV1I	GCAGC	3 cut(s)	342, 370, 668
BstXI	CCANNNNNNTGG	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	3 cut(s)	321, 545, 553
Cac8I	GCNNGC	6 cut(s)	50, 148, 185, 221, 307, 311
CaiI	CAGNNNCTG	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	272
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	3 cut(s)	184, 306, 310
DpnI	GATC	1 cut(s)	552
DpnII	GATC	1 cut(s)	550
Ecl136II	GAGCTC	2 cut(s)	441, 567
Eco130I	CCWWGG	1 cut(s)	96
Eco24I	GRGCYC	2 cut(s)	443, 569
Eco31I	GGTCTC	1 cut(s)	706
Eco47I	GGWCC	1 cut(s)	272
Eco53kI	GAGCTC	2 cut(s)	441, 567
EcoICRI	GAGCTC	2 cut(s)	441, 567
EcoRI	GAATTC	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	96
EcoT22I	ATGCAT	1 cut(s)	311
EcoT38I	GRGCYC	2 cut(s)	443, 569
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	3 cut(s)	187, 309, 313
FaiI	YATR	7 cut(s)	163, 165, 185, 307, 311, 348, 588
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	3 cut(s)	183, 305, 309
Fnu4HI	GCNGC	4 cut(s)	356, 359, 509, 657
FokI	GGATG	3 cut(s)	328, 532, 540
FriOI	GRGCYC	2 cut(s)	443, 569
Fsp4HI	GCNGC	4 cut(s)	356, 359, 509, 657
GluI	GCNGC	4 cut(s)	356, 359, 509, 657
GsuI	CTGGAG	2 cut(s)	386, 427
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	3 cut(s)	187, 309, 313
HinfI	GANTC	3 cut(s)	481, 683, 691
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	550, 631
Hpy188III	TCNNGA	4 cut(s)	64, 88, 235, 444
HpyAV	CCTTC	8 cut(s)	6, 70, 85, 150, 205, 377, 403, 646
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	7 cut(s)	122, 290, 309, 334, 358, 545, 607
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 306, 529
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	3 cut(s)	187, 309, 313
Kzo9I	GATC	1 cut(s)	550
LmnI	GCTCC	2 cut(s)	250, 446
Lsp1109I	GCAGC	3 cut(s)	342, 370, 668
LweI	GCATC	4 cut(s)	109, 495, 554, 622
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	2 cut(s)	55, 74
MalI	GATC	1 cut(s)	552
MboI	GATC	1 cut(s)	550
MboII	GAAGA	1 cut(s)	40
MhlI	GDGCHC	2 cut(s)	443, 569
MluCI	AATT	6 cut(s)	101, 167, 526, 534, 663, 673
MlyI	GAGTC	1 cut(s)	700
MnlI	CCTC	6 cut(s)	118, 361, 406, 463, 493, 642
Mph1103I	ATGCAT	1 cut(s)	311
MseI	TTAA	2 cut(s)	24, 200
MslI	CAYNNNNRTG	2 cut(s)	182, 314
MspI	CCGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	3 cut(s)	128, 306, 529
NdeII	GATC	1 cut(s)	550
NlaIII	CATG	3 cut(s)	187, 309, 313
NlaIV	GGNNCC	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	311
NspI	RCATGY	3 cut(s)	187, 309, 313
PaeI	GCATGC	3 cut(s)	187, 309, 313
PfeI	GAWTC	2 cut(s)	481, 683
PkrI	GCNGC	4 cut(s)	357, 360, 510, 658
PleI	GAGTC	1 cut(s)	699
PpsI	GAGTC	1 cut(s)	699
Ppu21I	YACGTR	1 cut(s)	380
PsiI	TTATAA	1 cut(s)	348
Psp124BI	GAGCTC	2 cut(s)	443, 569
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	364
RseI	CAYNNNNRTG	2 cut(s)	182, 314
SacI	GAGCTC	2 cut(s)	443, 569
SaqAI	TTAA	2 cut(s)	24, 200
SatI	GCNGC	4 cut(s)	356, 359, 509, 657
Sau3AI	GATC	1 cut(s)	550
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	1 cut(s)	700
SduI	GDGCHC	2 cut(s)	443, 569
SetI	ASST	8 cut(s)	62, 129, 357, 382, 443, 498, 569, 661
SfaNI	GCATC	4 cut(s)	109, 495, 554, 622
SfcI	CTRYAG	1 cut(s)	356
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	182, 314
SmlI	CTYRAG	4 cut(s)	86, 172, 340, 497
SmoI	CTYRAG	4 cut(s)	86, 172, 340, 497
SphI	GCATGC	3 cut(s)	187, 309, 313
Sse9I	AATT	6 cut(s)	101, 167, 526, 534, 663, 673
SsiI	CCGC	3 cut(s)	275, 313, 508
SstI	GAGCTC	2 cut(s)	443, 569
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	1 cut(s)	581
TasI	AATT	6 cut(s)	101, 167, 526, 534, 663, 673
TauI	GCSGC	1 cut(s)	511
TfiI	GAWTC	2 cut(s)	481, 683
Tru1I	TTAA	2 cut(s)	24, 200
Tru9I	TTAA	2 cut(s)	24, 200
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	355, 358, 656
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	180, 603
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	2 cut(s)	167, 673
XceI	RCATGY	3 cut(s)	187, 309, 313
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.