Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009754

Physical Location & Seq

Genomic Coordinates Forward (+)

6250254 .. 6255390

Gene Structure 5137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g06350.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAATACAGAAAATAGCACACCGGCAAGAAAACCTTTGGGCAGAGGGAGGATTGAGATCAAGAAGATCGAGAATCTGAGTAGCAGGCAAGTCACGTTCTCGAAACGGCGTAATGGGCTGCTCAAGAAGGCCAAAGAATTGTCAGTTCTTTGTGATGCTGAGGTTGCTGTCATCGTTTTCTCCAGCACCGGAAAACTTTATGAATTCTCAAGCACCAGCATGGACCACACTCTTTCAAGGTACAACAAGGGCGGCCTAATAGAGCATCCACAAAAAGAGCGCTCCGGTGACAATGAACCTGCAACCAACTCTAACTGTAATCTAAATGCACTACAGAATGAGATTGCAACACTACGCTTGACATGCACGCGGATGACGGGTAAGGAACTGGACGGCGTGAGTTTGAAAGACCTGCAGCGTCTAGAGGACCAACTAAGTGAAGGGATATTATGTGTCAAGGACAAGAAGGAGGAAATACTTATGGAGAAGCTCAAGAAGTCCAGATTACAGGAACAAAAGGCCATGGAGGAGAGCGAGAATCTGCGCAAAGAGCTTGAGGAGATGCGGCAAAATAAGAGGTCGAATTGGCCAATTGTGGTTGCATCCCATCCTTTGGAGAGGAGGTTTTCCTGCACAAGCTCTAAAGCCGTTTCCAGTTACAAAGCAGAAGAAAGTGACCATTCAGACACTTCTTTGCATTTAGGGTTATCGTCAGATGTTCATCGCAAGAGGAAGGCAGCTAAGATTGAACACAATTCTAACGATTCAGGAAGTCAAGTGGCCTCAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048519 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

264

Amino Acids

29.63

Weight (kDa)

8.98

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57390 AT3G57390 AT3G57390
fragaria_vesca	FvH4_4g20680 FvH4_4g20680
malus_domestica	MD00G1106300.v1.1
prunus_persica	Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1
pyrus_communis	pycom14g06350
rosa_chinensis	RchiOBHm_Chr3g0483031
rosa_laevigata	RLG00000023305
rosa_multiflora	Rmu_sc0000441.1_g000133
rosa_roxburghii	Rroxscaffold_6G00398700
rosa_rugosa	Rorug03G0203800 Rorug03G0203900
rosa_samantha	Rh3AG251800 Rh3BG288400 Rh3CG286000 Rh3DG281600
rosa_wichuraiana	Rw3G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	545
Acc36I	ACCTGC	2 cut(s)	307, 420
AccB7I	CCANNNNNTGG	1 cut(s)	613
AccII	CGCG	1 cut(s)	370
AciI	CCGC	3 cut(s)	252, 370, 565
AcoI	YGGCCR	1 cut(s)	587
AcsI	RAATTY	1 cut(s)	203
AfaI	GTAC	1 cut(s)	242
AfeI	AGCGCT	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	613
AgsI	TTSAA	3 cut(s)	237, 406, 749
AluBI	AGCT	4 cut(s)	490, 553, 639, 740
AluI	AGCT	4 cut(s)	490, 553, 639, 740
Aor51HI	AGCGCT	1 cut(s)	281
AoxI	GGCC	5 cut(s)	129, 253, 519, 587, 780
ApeKI	GCWGC	3 cut(s)	118, 415, 737
ApoI	RAATTY	1 cut(s)	203
AspLEI	GCGC	2 cut(s)	282, 546
AspS9I	GGNCC	2 cut(s)	223, 427
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	2 cut(s)	223, 427
BalI	TGGCCA	1 cut(s)	589
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	3 cut(s)	105, 427, 749
BccI	CCATC	1 cut(s)	615
BceAI	ACGGC	3 cut(s)	122, 409, 632
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	2 cut(s)	332, 413
BfoI	RGCGCY	1 cut(s)	283
BfuAI	ACCTGC	2 cut(s)	307, 420
BisI	GCNGC	5 cut(s)	119, 253, 416, 566, 738
BlsI	GCNGC	5 cut(s)	120, 254, 417, 567, 739
Bme18I	GGWCC	2 cut(s)	223, 427
BmgT120I	GGNCC	2 cut(s)	223, 427
BmsI	GCATC	4 cut(s)	145, 274, 552, 611
BpmI	CTGGAG	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	4 cut(s)	107, 193, 476, 575
BsaBI	GATNNNNATC	2 cut(s)	56, 720
BsaJI	CCNNGG	1 cut(s)	522
BsaWI	WCCGGW	2 cut(s)	188, 284
BsaXI	ACNNNNNCTCC	2 cut(s)	608, 638
Bsc4I	CCNNNNNNNGG	1 cut(s)	613
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	2 cut(s)	393, 654
Bse8I	GATNNNNATC	2 cut(s)	56, 720
BseDI	CCNNGG	1 cut(s)	522
BseGI	GGATG	4 cut(s)	265, 378, 602, 607
BseJI	GATNNNNATC	2 cut(s)	56, 720
BseLI	CCNNNNNNNGG	1 cut(s)	613
BseMII	CTCAG	2 cut(s)	68, 150
BseNI	ACTGG	2 cut(s)	393, 654
BseRI	GAGGAG	3 cut(s)	542, 572, 634
BseXI	GCAGC	3 cut(s)	105, 427, 749
BsgI	GTGCAG	1 cut(s)	616
Bsh1236I	CGCG	1 cut(s)	370
BshFI	GGCC	5 cut(s)	131, 255, 521, 589, 782
BsiSI	CCGG	3 cut(s)	23, 189, 285
BslI	CCNNNNNNNGG	1 cut(s)	613
BsnI	GGCC	5 cut(s)	131, 255, 521, 589, 782
Bsp143I	GATC	2 cut(s)	57, 66
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	3 cut(s)	252, 370, 565
BspANI	GGCC	5 cut(s)	131, 255, 521, 589, 782
BspCNI	CTCAG	2 cut(s)	69, 151
BspFNI	CGCG	1 cut(s)	370
BspMAI	CTGCAG	1 cut(s)	417
BspMI	ACCTGC	2 cut(s)	307, 420
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	2 cut(s)	393, 654
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	522
BssMI	GATC	2 cut(s)	57, 66
BssT1I	CCWWGG	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	317
BstC8I	GCNNGC	2 cut(s)	86, 368
BstDEI	CTNAG	5 cut(s)	77, 159, 434, 741, 784
BstDSI	CCRYGG	1 cut(s)	522
BstF5I	GGATG	4 cut(s)	265, 378, 602, 607
BstFNI	CGCG	1 cut(s)	370
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	2 cut(s)	282, 546
BstKTI	GATC	2 cut(s)	60, 69
BstMBI	GATC	2 cut(s)	57, 66
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 164, 363, 550
BstNSI	RCATGY	1 cut(s)	366
BstSFI	CTRYAG	2 cut(s)	332, 413
BstUI	CGCG	1 cut(s)	370
BstV1I	GCAGC	3 cut(s)	105, 427, 749
BsuRI	GGCC	5 cut(s)	131, 255, 521, 589, 782
BtgI	CCRYGG	1 cut(s)	522
BtgZI	GCGATG	1 cut(s)	707
BtsCI	GGATG	4 cut(s)	265, 378, 602, 607
BveI	ACCTGC	2 cut(s)	307, 420
Cac8I	GCNNGC	2 cut(s)	86, 368
CfoI	GCGC	2 cut(s)	282, 546
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	223, 427
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	3 cut(s)	220, 363, 523
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	5 cut(s)	77, 159, 434, 741, 784
DpnI	GATC	2 cut(s)	59, 68
DpnII	GATC	2 cut(s)	57, 66
EaeI	YGGCCR	1 cut(s)	587
Eco130I	CCWWGG	1 cut(s)	522
Eco47I	GGWCC	2 cut(s)	223, 427
Eco47III	AGCGCT	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	3 cut(s)	223, 366, 526
FaiI	YATR	6 cut(s)	201, 221, 364, 451, 482, 524
FalI	AAGNNNNNCTT	2 cut(s)	19, 51
FatI	CATG	3 cut(s)	219, 362, 522
Fnu4HI	GCNGC	5 cut(s)	119, 253, 416, 566, 738
FokI	GGATG	4 cut(s)	252, 385, 589, 594
Fsp4HI	GCNGC	5 cut(s)	119, 253, 416, 566, 738
FspBI	CTAG	1 cut(s)	422
FspI	TGCGCA	1 cut(s)	545
GlaI	GCGC	2 cut(s)	281, 545
GluI	GCNGC	5 cut(s)	119, 253, 416, 566, 738
GsuI	CTGGAG	1 cut(s)	166
HaeII	RGCGCY	1 cut(s)	283
HaeIII	GGCC	5 cut(s)	131, 255, 521, 589, 782
HapII	CCGG	3 cut(s)	23, 189, 285
HgaI	GACGC	1 cut(s)	407
HhaI	GCGC	2 cut(s)	282, 546
Hin1II	CATG	3 cut(s)	223, 366, 526
Hin6I	GCGC	2 cut(s)	280, 544
HinP1I	GCGC	2 cut(s)	280, 544
HinfI	GANTC	3 cut(s)	73, 538, 764
HpaII	CCGG	3 cut(s)	23, 189, 285
HphI	GGTGA	1 cut(s)	299
Hpy188I	TCNGA	4 cut(s)	78, 685, 715, 787
Hpy188III	TCNNGA	8 cut(s)	61, 70, 100, 124, 422, 493, 501, 768
HpyAV	CCTTC	4 cut(s)	121, 434, 460, 727
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	8 cut(s)	302, 329, 347, 366, 415, 602, 633, 697
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 164, 363, 550
HpyF3I	CTNAG	5 cut(s)	77, 159, 434, 741, 784
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	3 cut(s)	223, 366, 526
HspAI	GCGC	2 cut(s)	280, 544
Kzo9I	GATC	2 cut(s)	57, 66
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	3 cut(s)	105, 427, 749
LweI	GCATC	4 cut(s)	145, 274, 552, 611
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	4 cut(s)	91, 287, 656, 674
MalI	GATC	2 cut(s)	59, 68
MboI	GATC	2 cut(s)	57, 66
MboII	GAAGA	2 cut(s)	76, 680
MfeI	CAATTG	1 cut(s)	591
MlsI	TGGCCA	1 cut(s)	589
MluCI	AATT	5 cut(s)	137, 203, 583, 591, 754
MluNI	TGGCCA	1 cut(s)	589
Mox20I	TGGCCA	1 cut(s)	589
MscI	TGGCCA	1 cut(s)	589
MslI	CAYNNNNRTG	2 cut(s)	218, 371
Msp20I	TGGCCA	1 cut(s)	589
MspI	CCGG	3 cut(s)	23, 189, 285
MunI	CAATTG	1 cut(s)	591
MvnI	CGCG	1 cut(s)	370
MwoI	GCNNNNNNNGC	4 cut(s)	115, 164, 363, 550
NcoI	CCATGG	1 cut(s)	522
NdeII	GATC	2 cut(s)	57, 66
NlaIII	CATG	3 cut(s)	223, 366, 526
NmuCI	GTSAC	3 cut(s)	91, 287, 674
NsbI	TGCGCA	1 cut(s)	545
NspI	RCATGY	1 cut(s)	366
PfeI	GAWTC	3 cut(s)	73, 538, 764
PflMI	CCANNNNNTGG	1 cut(s)	613
PkrI	GCNGC	5 cut(s)	120, 254, 417, 567, 739
PspPI	GGNCC	2 cut(s)	223, 427
PstI	CTGCAG	1 cut(s)	417
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
RseI	CAYNNNNRTG	2 cut(s)	218, 371
SatI	GCNGC	5 cut(s)	119, 253, 416, 566, 738
Sau3AI	GATC	2 cut(s)	57, 66
Sau96I	GGNCC	2 cut(s)	223, 427
SfaNI	GCATC	4 cut(s)	145, 274, 552, 611
SfcI	CTRYAG	2 cut(s)	332, 413
SinI	GGWCC	2 cut(s)	223, 427
SmiMI	CAYNNNNRTG	2 cut(s)	218, 371
SmlI	CTYRAG	4 cut(s)	122, 208, 491, 554
SmoI	CTYRAG	4 cut(s)	122, 208, 491, 554
Sse9I	AATT	5 cut(s)	137, 203, 583, 591, 754
SsiI	CCGC	3 cut(s)	252, 370, 565
SspMI	CTAG	1 cut(s)	422
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	317
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	3 cut(s)	69, 101, 581
TasI	AATT	5 cut(s)	137, 203, 583, 591, 754
TauI	GCSGC	2 cut(s)	255, 568
TfiI	GAWTC	3 cut(s)	73, 538, 764
TseFI	GTSAC	3 cut(s)	91, 287, 674
TseI	GCWGC	3 cut(s)	118, 415, 737
Tsp45I	GTSAC	3 cut(s)	91, 287, 674
TspDTI	ATGAA	4 cut(s)	17, 216, 309, 710
Van91I	CCANNNNNTGG	1 cut(s)	613
VpaK11BI	GGWCC	2 cut(s)	223, 427
XapI	RAATTY	1 cut(s)	203
XbaI	TCTAGA	1 cut(s)	421
XceI	RCATGY	1 cut(s)	366
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.