Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009754

Physical Location & Seq

Genomic Coordinates Forward (+)

20602616 .. 20605557

Gene Structure 2942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00398700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGTGGGGAACGATACAGAACGAAACTCACAGACCAGAAAGATGGGTCGGGGGAAAATTGAGATCAAGAAGATTGAAAATCTCAGTAGCAGGCAAGTCACGTTCTCGAAACGCCGCAGCGGATTGTTCAAGAAGGCAGCCGAATTGTCAGTACTATGCGATGCGGAGATTGCAGTCATAATTTTTTCTCAAACTGGAAAGCTTTATGAACAATCAAGCACCAGCATGGAGAAAATTCTTTCGAGGTATCACAATTTTTCAAACAAGCAGGGCCTCCTCCAATTAGAGTATTCTTCAGAAGAGCTCCCCCATGAATCTGCTGAAGAGGAGCCGAAATTTGATTCAAGCGCACTGCAGAGAAAATTTGAAGCAATGCAGCAAAAGATTGAAGCATTACAGTTGGAACTCTGTCGGATGAAGGGTCAGAAACTGGATGGGCTGAGCTTAAATGACCTGTATGAGCTGGAGAAACAACAAATGGAAGGGGAATTAGCTGTTAAGAACAAGAAGGAGGAAATACTTTCGGAGGAGAAACAGAAGACTACAAAGGAACATGAGAAGGCTATGCAAAAGATTGAGAATCTGGAAAGAGAGATTGAGGAATTGAGGAGGCAAAACTATGTGCGCCCATCTATCATTGAATCCCATCCTCCTAAGAAGAGGCTTTTATACTTTACAAACTCATCCAAAGCCGTTTCCAATTGTTCAACTGCCTCTGAGCACGAAAGTGACGAGCATTCGGACACTTCTTTGCAATTGGGGTTTAATTTCTCAGGTTGTCATCAGCCAAGTGTTGGTCAGTGCAAGAGGAAAGAAGCCCGCATTCGCCCCAGTTCTAATGATTCTGGGAGTCAAGTAGTCTCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048519 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

289

Amino Acids

33.07

Weight (kDa)

7.06

Isoelectric Point (pI)

66.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	24 - 70	6.6e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	115 - 199	7.9e-07	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57390 AT3G57390 AT3G57390
fragaria_vesca	FvH4_4g20680 FvH4_4g20680
malus_domestica	MD00G1106300.v1.1
prunus_persica	Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1
pyrus_communis	pycom14g06350
rosa_chinensis	RchiOBHm_Chr3g0483031
rosa_laevigata	RLG00000023305
rosa_multiflora	Rmu_sc0000441.1_g000133
rosa_roxburghii	Rroxscaffold_6G00398700
rosa_rugosa	Rorug03G0203800 Rorug03G0203900
rosa_samantha	Rh3AG251800 Rh3BG288400 Rh3CG286000 Rh3DG281600
rosa_wichuraiana	Rw3G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	794
AciI	CCGC	4 cut(s)	115, 120, 164, 820
AcsI	RAATTY	3 cut(s)	234, 335, 362
AcuI	CTGAAG	2 cut(s)	279, 342
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	794
AgsI	TTSAA	8 cut(s)	77, 130, 261, 345, 368, 389, 641, 708
AleI	CACNNNNGTG	1 cut(s)	726
AluBI	AGCT	5 cut(s)	202, 304, 444, 463, 494
AluI	AGCT	5 cut(s)	202, 304, 444, 463, 494
Alw21I	GWGCWC	2 cut(s)	306, 723
Alw26I	GTCTC	1 cut(s)	865
AlwNI	CAGNNNCTG	1 cut(s)	430
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	3 cut(s)	117, 137, 376
ApoI	RAATTY	3 cut(s)	234, 335, 362
AspLEI	GCGC	2 cut(s)	350, 627
AspS9I	GGNCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	545
Bbv12I	GWGCWC	2 cut(s)	306, 723
BbvI	GCAGC	3 cut(s)	129, 149, 388
BccI	CCATC	4 cut(s)	37, 428, 637, 654
BceAI	ACGGC	1 cut(s)	677
BcoDI	GTCTC	1 cut(s)	865
BfmI	CTRYAG	1 cut(s)	353
BisI	GCNGC	4 cut(s)	115, 118, 138, 377
BlpI	GCTNAGC	1 cut(s)	440
BlsI	GCNGC	4 cut(s)	116, 119, 139, 378
BmcAI	AGTACT	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	330
BmrI	ACTGGG	1 cut(s)	825
BmsI	GCATC	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	825
BpiI	GAAGAC	1 cut(s)	545
BpmI	CTGGAG	1 cut(s)	485
Bpu1102I	GCTNAGC	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	1 cut(s)	794
Bse1I	ACTGG	3 cut(s)	199, 435, 831
Bse3DI	GCAATG	1 cut(s)	378
BseGI	GGATG	4 cut(s)	420, 439, 646, 683
BseLI	CCNNNNNNNGG	1 cut(s)	794
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	4 cut(s)	97, 431, 708, 786
BseNI	ACTGG	3 cut(s)	199, 435, 831
BseRI	GAGGAG	4 cut(s)	266, 341, 542, 622
BseXI	GCAGC	3 cut(s)	129, 149, 388
BshFI	GGCC	1 cut(s)	273
BsiHKAI	GWGCWC	2 cut(s)	306, 723
BslI	CCNNNNNNNGG	1 cut(s)	794
BsmAI	GTCTC	1 cut(s)	865
BsmI	GAATGC	2 cut(s)	736, 822
BsnI	GGCC	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	306, 723
Bsp143I	GATC	1 cut(s)	63
Bsp1720I	GCTNAGC	1 cut(s)	440
BspACI	CCGC	4 cut(s)	115, 120, 164, 820
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	4 cut(s)	96, 432, 709, 785
BspLI	GGNNCC	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	357
BspQI	GCTCTTC	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	3 cut(s)	199, 435, 831
BssMI	GATC	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	399
Bst6I	CTCTTC	3 cut(s)	294, 318, 653
BstC8I	GCNNGC	2 cut(s)	92, 820
BstDEI	CTNAG	6 cut(s)	83, 440, 654, 717, 772, 862
BstF5I	GGATG	4 cut(s)	420, 439, 646, 683
BstHHI	GCGC	2 cut(s)	350, 627
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	865
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	353
BstV1I	GCAGC	3 cut(s)	129, 149, 388
BstV2I	GAAGAC	1 cut(s)	545
BstXI	CCANNNNNNTGG	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	273
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	4 cut(s)	420, 439, 646, 683
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	2 cut(s)	350, 806
Cac8I	GCNNGC	2 cut(s)	92, 820
CaiI	CAGNNNCTG	1 cut(s)	430
CfoI	GCGC	2 cut(s)	350, 627
Cfr13I	GGNCC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	3 cut(s)	226, 311, 554
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	6 cut(s)	83, 440, 654, 717, 772, 862
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eam1104I	CTCTTC	3 cut(s)	294, 318, 653
EarI	CTCTTC	3 cut(s)	294, 318, 653
Ecl136II	GAGCTC	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	306
Eco53kI	GAGCTC	1 cut(s)	304
Eco57I	CTGAAG	2 cut(s)	279, 342
EcoICRI	GAGCTC	1 cut(s)	304
EcoO109I	RGGNCCY	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	306
FaeI	CATG	3 cut(s)	229, 314, 557
FatI	CATG	3 cut(s)	225, 310, 553
FauI	CCCGC	1 cut(s)	827
Fnu4HI	GCNGC	4 cut(s)	115, 118, 138, 377
FokI	GGATG	4 cut(s)	427, 446, 633, 670
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	4 cut(s)	115, 118, 138, 377
GlaI	GCGC	2 cut(s)	349, 626
GluI	GCNGC	4 cut(s)	115, 118, 138, 377
GsuI	CTGGAG	1 cut(s)	485
HaeIII	GGCC	1 cut(s)	273
HhaI	GCGC	2 cut(s)	350, 627
Hin1II	CATG	3 cut(s)	229, 314, 557
Hin6I	GCGC	2 cut(s)	348, 625
HinP1I	GCGC	2 cut(s)	348, 625
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	6 cut(s)	314, 341, 580, 641, 842, 850
Hpy188I	TCNGA	7 cut(s)	298, 414, 426, 526, 718, 742, 865
Hpy188III	TCNNGA	4 cut(s)	67, 106, 130, 584
HpyAV	CCTTC	5 cut(s)	127, 412, 476, 502, 553
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	6 cut(s)	173, 355, 376, 568, 754, 804
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	6 cut(s)	83, 440, 654, 717, 772, 862
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	3 cut(s)	229, 314, 557
HspAI	GCGC	2 cut(s)	348, 625
Kzo9I	GATC	1 cut(s)	63
LguI	GCTCTTC	1 cut(s)	294
LmnI	GCTCC	2 cut(s)	309, 328
Lsp1109I	GCAGC	3 cut(s)	129, 149, 388
LweI	GCATC	1 cut(s)	151
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	2 cut(s)	97, 728
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	6 cut(s)	82, 285, 311, 335, 550, 670
MfeI	CAATTG	2 cut(s)	700, 755
MhlI	GDGCHC	2 cut(s)	306, 723
MlyI	GAGTC	1 cut(s)	859
MmeI	TCCRAC	2 cut(s)	381, 392
MseI	TTAA	3 cut(s)	446, 498, 765
MslI	CAYNNNNRTG	2 cut(s)	224, 726
MspA1I	CMGCKG	1 cut(s)	120
MunI	CAATTG	2 cut(s)	700, 755
Mva1269I	GAATGC	2 cut(s)	736, 822
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	3 cut(s)	229, 314, 557
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	2 cut(s)	97, 728
OliI	CACNNNNGTG	1 cut(s)	726
PciSI	GCTCTTC	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	729
PctI	GAATGC	2 cut(s)	736, 822
PfeI	GAWTC	5 cut(s)	314, 341, 580, 641, 842
PflMI	CCANNNNNTGG	1 cut(s)	794
PkrI	GCNGC	4 cut(s)	116, 119, 139, 378
PleI	GAGTC	1 cut(s)	858
PpsI	GAGTC	1 cut(s)	858
Psp124BI	GAGCTC	1 cut(s)	306
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	1 cut(s)	271
PstI	CTGCAG	1 cut(s)	357
PstNI	CAGNNNCTG	1 cut(s)	430
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
RseI	CAYNNNNRTG	2 cut(s)	224, 726
SacI	GAGCTC	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	446, 498, 765
SatI	GCNGC	4 cut(s)	115, 118, 138, 377
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	271
ScaI	AGTACT	1 cut(s)	153
SchI	GAGTC	1 cut(s)	859
SduI	GDGCHC	2 cut(s)	306, 723
SetI	ASST	9 cut(s)	104, 204, 248, 306, 446, 456, 465, 496, 778
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	2 cut(s)	224, 726
SsiI	CCGC	4 cut(s)	115, 120, 164, 820
SstI	GAGCTC	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	399
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	2 cut(s)	107, 242
TatI	WGTACW	1 cut(s)	151
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	5 cut(s)	314, 341, 580, 641, 842
Tru1I	TTAA	3 cut(s)	446, 498, 765
Tru9I	TTAA	3 cut(s)	446, 498, 765
TscAI	CASTG	2 cut(s)	357, 806
TseFI	GTSAC	2 cut(s)	97, 728
TseI	GCWGC	3 cut(s)	117, 137, 376
Tsp45I	GTSAC	2 cut(s)	97, 728
TspDTI	ATGAA	3 cut(s)	222, 327, 431
TspRI	CASTG	2 cut(s)	357, 806
Van91I	CCANNNNNTGG	1 cut(s)	794
XapI	RAATTY	3 cut(s)	234, 335, 362
ZrmI	AGTACT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.