Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009754

Physical Location & Seq

Genomic Coordinates Reverse (-)

23813255 .. 23817531

Gene Structure 4277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGTGGGGAACGATATAGAACGAAGCAGTTCACATACCAGAAAGATGGGGCGGGGGAAAATTGAGATTAAGAAGATTGAAAATCTCAGTAGCAGGCAAGTCACCTTTTCAAAACGCCGCGGCGGATTGTTCAAGAAAGCAGGAGAATTGGCCGTACTATGCGATGCCGAGGTCGCAGTCATAATTTTTTCTCAAACCGGAAAGCTTTATGAACAATCAAGCACCAGCATGGAGAAGATTCTCTCAAGGTATCACAATTTTTCAAACAAGCAGGACGTCCCCCAATTAGAGTACTGTTTAGAAGAGCTCCCCCATGAATTTGTTAAAGAGGAGCTGAAATTTGATTCAAGTGCACTGAAAAAATTTGAAGCAATGCAACAAAAGATTGAAGTATTACAGCTGGAACTCTGTCGGATGAAGGGTCAGAAACTAGATGGGTTGAGCATAAATGATCTATGTGAGTTGGAGAAACAACAAATCGAAGGGGAATTAGCTGTTAAGAACAAGAAGGAGGAAAAACTCTGGGAGGAGAAACAAAAGACTATGAAGGAGCATGAAATGGCTATGCAAAAGATTGAGAATTTGGAAAGAGAGATAGAGGAACTGAGAAAGCAAAACCATGTGCACCCGTCTATCATTGAATCCCATCCTCCTAAGAAGAGGCTTTTATACTATACAAACTCATCAAAAGCCATTTCCAATTGTTCAACTGCCTCTGAAAACGAAAGTGACGAGCATTCAAACACTTCTTTGCAATTAGGGTTGTCATCGTCCAAGTGTTGGTCTAAACAAGAGAAAAGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048519 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

269

Amino Acids

30.97

Weight (kDa)

8.1

Isoelectric Point (pI)

66.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	25 - 71	2.6e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57390 AT3G57390 AT3G57390
fragaria_vesca	FvH4_4g20680 FvH4_4g20680
malus_domestica	MD00G1106300.v1.1
prunus_persica	Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1
pyrus_communis	pycom14g06350
rosa_chinensis	RchiOBHm_Chr3g0483031
rosa_laevigata	RLG00000023305
rosa_multiflora	Rmu_sc0000441.1_g000133
rosa_roxburghii	Rroxscaffold_6G00398700
rosa_rugosa	Rorug03G0203800 Rorug03G0203900
rosa_samantha	Rh3AG251800 Rh3BG288400 Rh3CG286000 Rh3DG281600
rosa_wichuraiana	Rw3G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
AccB7I	CCANNNNNTGG	1 cut(s)	780
AccII	CGCG	1 cut(s)	120
AciI	CCGC	4 cut(s)	52, 118, 120, 123
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	4 cut(s)	317, 338, 362, 580
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	2 cut(s)	156, 293
AfiI	CCNNNNNNNGG	1 cut(s)	780
AluBI	AGCT	6 cut(s)	205, 307, 334, 400, 494, 804
AluI	AGCT	6 cut(s)	205, 307, 334, 400, 494, 804
Alw21I	GWGCWC	3 cut(s)	309, 355, 627
Alw44I	GTGCAC	2 cut(s)	351, 623
AoxI	GGCC	1 cut(s)	150
ApaLI	GTGCAC	2 cut(s)	351, 623
ApoI	RAATTY	4 cut(s)	317, 338, 362, 580
Asp700I	GAANNNNTTC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	94
BaeGI	GKGCMC	2 cut(s)	355, 627
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	3 cut(s)	309, 355, 627
BccI	CCATC	3 cut(s)	40, 428, 654
BceAI	ACGGC	1 cut(s)	137
BfaI	CTAG	2 cut(s)	431, 805
BisI	GCNGC	2 cut(s)	118, 121
BlsI	GCNGC	2 cut(s)	119, 122
BmcAI	AGTACT	1 cut(s)	293
BmsI	GCATC	1 cut(s)	154
BpuEI	CTTGAG	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	118, 168
BsaWI	WCCGGW	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	1 cut(s)	780
Bse3DI	GCAATG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	118, 168
BseGI	GGATG	2 cut(s)	420, 646
BseLI	CCNNNNNNNGG	1 cut(s)	780
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	2 cut(s)	100, 596
BseRI	GAGGAG	2 cut(s)	344, 542
BseSI	GKGCMC	2 cut(s)	355, 627
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	152
BsiHKAI	GWGCWC	3 cut(s)	309, 355, 627
BsiSI	CCGG	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	780
BsmFI	GGGAC	1 cut(s)	263
BsmI	GAATGC	1 cut(s)	736
BsnI	GGCC	1 cut(s)	152
Bsp1286I	GDGCHC	3 cut(s)	309, 355, 627
Bsp143I	GATC	1 cut(s)	451
BspACI	CCGC	4 cut(s)	52, 118, 120, 123
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	2 cut(s)	99, 597
BspFNI	CGCG	1 cut(s)	120
BspQI	GCTCTTC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	378
BssECI	CCNNGG	2 cut(s)	118, 168
BssMI	GATC	1 cut(s)	451
BssNI	GRCGYC	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	2 cut(s)	297, 653
BstACI	GRCGYC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	3 cut(s)	86, 605, 654
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	420, 646
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	454
BstMBI	GATC	1 cut(s)	451
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstSLI	GKGCMC	2 cut(s)	355, 627
BstUI	CGCG	1 cut(s)	120
BstXI	CCANNNNNNTGG	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	420, 646
BtsIMutI	CAGTG	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	95
Cfr42I	CCGCGG	1 cut(s)	121
Csp6I	GTAC	2 cut(s)	155, 292
CviAII	CATG	4 cut(s)	229, 314, 554, 620
CviQI	GTAC	2 cut(s)	155, 292
DdeI	CTNAG	3 cut(s)	86, 605, 654
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	2 cut(s)	297, 653
EarI	CTCTTC	2 cut(s)	297, 653
EciI	GGCGGA	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	4 cut(s)	232, 317, 557, 623
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	4 cut(s)	228, 313, 553, 619
FauI	CCCGC	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	118, 121
FokI	GGATG	2 cut(s)	427, 633
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	2 cut(s)	118, 121
FspBI	CTAG	2 cut(s)	431, 805
GluI	GCNGC	2 cut(s)	118, 121
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	4 cut(s)	232, 317, 557, 623
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	3 cut(s)	238, 344, 641
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	3 cut(s)	32, 353, 625
Hpy188I	TCNGA	3 cut(s)	414, 426, 718
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	3 cut(s)	32, 353, 625
HpyAV	CCTTC	4 cut(s)	412, 476, 502, 541
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	5 cut(s)	353, 376, 568, 625, 754
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	3 cut(s)	86, 605, 654
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	4 cut(s)	232, 317, 557, 623
KspI	CCGCGG	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	451
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	3 cut(s)	312, 331, 550
LpnPI	CCDG	8 cut(s)	52, 79, 126, 211, 238, 257, 386, 508
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	2 cut(s)	431, 805
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	2 cut(s)	100, 728
MalI	GATC	1 cut(s)	453
MboI	GATC	1 cut(s)	451
MboII	GAAGA	4 cut(s)	85, 247, 314, 670
MfeI	CAATTG	1 cut(s)	700
MhlI	GDGCHC	3 cut(s)	309, 355, 627
MmeI	TCCRAC	2 cut(s)	392, 444
MnlI	CCTC	8 cut(s)	163, 322, 505, 520, 592, 654, 660, 724
MroXI	GAANNNNTTC	1 cut(s)	28
MseI	TTAA	3 cut(s)	69, 324, 498
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	2 cut(s)	120, 400
MspI	CCGG	1 cut(s)	198
MunI	CAATTG	1 cut(s)	700
Mva1269I	GAATGC	1 cut(s)	736
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeII	GATC	1 cut(s)	451
NlaIII	CATG	4 cut(s)	232, 317, 557, 623
NmeAIII	GCCGAG	1 cut(s)	193
NmuCI	GTSAC	2 cut(s)	100, 728
PciSI	GCTCTTC	1 cut(s)	297
PcsI	WCGNNNNNNNCGW	1 cut(s)	729
PctI	GAATGC	1 cut(s)	736
PdmI	GAANNNNTTC	1 cut(s)	28
PfeI	GAWTC	3 cut(s)	238, 344, 641
PflMI	CCANNNNNTGG	1 cut(s)	780
PkrI	GCNGC	2 cut(s)	119, 122
Psp124BI	GAGCTC	1 cut(s)	309
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	2 cut(s)	156, 293
RsaNI	GTAC	2 cut(s)	155, 292
RseI	CAYNNNNRTG	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	309
SacII	CCGCGG	1 cut(s)	121
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	69, 324, 498
SatI	GCNGC	2 cut(s)	118, 121
Sau3AI	GATC	1 cut(s)	451
ScaI	AGTACT	1 cut(s)	293
SduI	GDGCHC	3 cut(s)	309, 355, 627
SfaNI	GCATC	1 cut(s)	154
Sfr303I	CCGCGG	1 cut(s)	121
SgrBI	CCGCGG	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
SsiI	CCGC	4 cut(s)	52, 118, 120, 123
SspMI	CTAG	2 cut(s)	431, 805
SstI	GAGCTC	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	1 cut(s)	480
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	2 cut(s)	120, 123
TfiI	GAWTC	3 cut(s)	238, 344, 641
Tru1I	TTAA	3 cut(s)	69, 324, 498
Tru9I	TTAA	3 cut(s)	69, 324, 498
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	2 cut(s)	100, 728
Tsp45I	GTSAC	2 cut(s)	100, 728
TspDTI	ATGAA	5 cut(s)	225, 330, 431, 560, 570
TspRI	CASTG	1 cut(s)	360
Van91I	CCANNNNNTGG	1 cut(s)	780
VneI	GTGCAC	2 cut(s)	351, 623
XapI	RAATTY	4 cut(s)	317, 338, 362, 580
XmnI	GAANNNNTTC	1 cut(s)	28
XspI	CTAG	2 cut(s)	431, 805
ZraI	GACGTC	1 cut(s)	277
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.