Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009754

Physical Location & Seq

Genomic Coordinates Reverse (-)

18096445 .. 18098065

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0203800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGATACTCAGCTTACGGGGGAGTCAAATTTCACAATTGCCTGATGAGTTTAAAAACTTGTCTGATCTAAGGTTGCTGGATTTGACTGGATGTAGTGTACTCAGAAGCATTTCACCAGGCGTCATATCAAGTTTATCCCGACTGGAAGAGTTGCTCATGTGGAATTGCTTTGAGAATAGCGCTAAGAGCTGGTTGGGCGAGCTAGTTTCCTTGGGTCGTTTGACTAATTTAGAAATGTTTCTGCCATCAGTTGGCAATCTGGGAAACAGCCTGCTATTTGAAAAGCTTGAAAGATTTCAGATCTCTATAGGATCAATGCATGAAAAAGCGGTTGTAAACCCTAGTGACAACTACTTGAGACTTCATGACGTTGATGCAATCTATCTATTGGGTACTGGAATCATTGAGTTGCTAAAGAAAACTGGTACGTTAGATATAAAAATGAGGAATTTGTCGTGCCCTCTGAATCTTGCCTTGGATACAGAATGTTGGGAAAACTTGACGGATCTTACGCTTGAGGACTGTTATGGTCTGCAATATCTCATAGACATGACACTAATGGCTCCACGTTGCGTCTTTCCTGTCTTGTATTCACTGAAGCTCAAGGGACTCAGGTGGCTGGAGAAGATATATCACGGTGAGCCGACATTGGGGTCACTTCAACGACTAAGGAAGTTGACTTTATCTGATCTATCTGCATTGAAGTATGTTTTGAAGATAGAAAGTCAATCTTCAATCCTCAGAAATTTAGAAGAGCTATACATACAAGATTGTCAGTCCTTGGAAGAGATTTTTGCCTTTGAAGGATCAGGACATCACGAGGAAGAAGCCAATGAAATTACCTTCCTAAATTTGACACGCTTGACTCTTCATAATCTACCGAGCTTCATTGGGATAAGCAAGAACATCTATAAGACCAACTTTCCTCAATTGATCACAATGGATCTCCGAACGCTGCCCAAGTTCACCAGACTCTGCCGGAATGGTTTGGCTCCAGATTGTGGCTATGACGCTGTACAACATCTACTGGACCCCAAGGTACTTTTCCTTCTCTCTTTAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048519 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

354

Amino Acids

40.17

Weight (kDa)

5.48

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	3 - 106	1.1e-06	Leucine-rich repeat region
LRR_RPS2	PF23247	199 - 301	1.3e-13	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57390 AT3G57390 AT3G57390
fragaria_vesca	FvH4_4g20680 FvH4_4g20680
malus_domestica	MD00G1106300.v1.1
prunus_persica	Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1
pyrus_communis	pycom14g06350
rosa_chinensis	RchiOBHm_Chr3g0483031
rosa_laevigata	RLG00000023305
rosa_multiflora	Rmu_sc0000441.1_g000133
rosa_roxburghii	Rroxscaffold_6G00398700
rosa_rugosa	Rorug03G0203800 Rorug03G0203900
rosa_samantha	Rh3AG251800 Rh3BG288400 Rh3CG286000 Rh3DG281600
rosa_wichuraiana	Rw3G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	652
AccB7I	CCANNNNNTGG	2 cut(s)	251, 1001
AciI	CCGC	1 cut(s)	329
AclWI	GGATC	4 cut(s)	319, 513, 814, 951
AcsI	RAATTY	4 cut(s)	27, 448, 745, 850
AcuI	CTGAAG	1 cut(s)	617
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	5 cut(s)	99, 394, 427, 1017, 1041
AfeI	AGCGCT	1 cut(s)	181
AfiI	CCNNNNNNNGG	3 cut(s)	251, 650, 1001
AgsI	TTSAA	7 cut(s)	281, 290, 662, 703, 715, 735, 803
AjnI	CCWGG	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	4 cut(s)	458, 490, 1028, 1060
AluBI	AGCT	7 cut(s)	12, 189, 202, 286, 601, 757, 885
AluI	AGCT	7 cut(s)	12, 189, 202, 286, 601, 757, 885
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	4 cut(s)	319, 513, 814, 951
AlwNI	CAGNNNCTG	1 cut(s)	975
Aor51HI	AGCGCT	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	955
ApoI	RAATTY	4 cut(s)	27, 448, 745, 850
Asp700I	GAANNNNTTC	3 cut(s)	109, 237, 294
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	1030
AsuHPI	GGTGA	3 cut(s)	105, 650, 958
AvaII	GGWCC	1 cut(s)	1030
BaeGI	GKGCMC	1 cut(s)	461
BarI	GAAGNNNNNNTAC	2 cut(s)	1032, 1064
BauI	CACGAG	1 cut(s)	818
BbvI	GCAGC	1 cut(s)	942
BccI	CCATC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	117
BciVI	GTATCC	1 cut(s)	472
BclI	TGATCA	1 cut(s)	933
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	2 cut(s)	203, 342
BfmI	CTRYAG	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	183
BfuI	GTATCC	1 cut(s)	472
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	1 cut(s)	956
BlsI	GCNGC	1 cut(s)	957
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	1030
BmgT120I	GGNCC	1 cut(s)	1030
BmiI	GGNNCC	3 cut(s)	564, 993, 1032
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	364
BpmI	CTGGAG	2 cut(s)	641, 978
BpuEI	CTTGAG	3 cut(s)	376, 536, 587
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	4 cut(s)	210, 474, 780, 1035
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 650, 1001
Bse1I	ACTGG	5 cut(s)	91, 147, 400, 427, 1032
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	4 cut(s)	210, 474, 780, 1035
BseGI	GGATG	1 cut(s)	95
BseLI	CCNNNNNNNGG	3 cut(s)	251, 650, 1001
BseMII	CTCAG	4 cut(s)	22, 115, 625, 754
BseNI	ACTGG	5 cut(s)	91, 147, 400, 427, 1032
BseSI	GKGCMC	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	942
BsiSI	CCGG	1 cut(s)	979
BslFI	GGGAC	1 cut(s)	621
BslI	CCNNNNNNNGG	3 cut(s)	251, 650, 1001
BsmAI	GTCTC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	621
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp1407I	TGTACA	1 cut(s)	1015
Bsp143I	GATC	8 cut(s)	64, 300, 311, 505, 688, 806, 933, 943
BspACI	CCGC	1 cut(s)	329
BspCNI	CTCAG	4 cut(s)	21, 114, 624, 753
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	3 cut(s)	564, 993, 1032
BspPI	GGATC	4 cut(s)	319, 513, 814, 951
BspQI	GCTCTTC	1 cut(s)	747
BsrGI	TGTACA	1 cut(s)	1015
BsrI	ACTGG	5 cut(s)	91, 147, 400, 427, 1032
BssECI	CCNNGG	4 cut(s)	210, 474, 780, 1035
BssMI	GATC	8 cut(s)	64, 300, 311, 505, 688, 806, 933, 943
BssNI	GRCGYC	1 cut(s)	120
BssSI	CACGAG	1 cut(s)	818
BssT1I	CCWWGG	4 cut(s)	210, 474, 780, 1035
Bst2BI	CACGAG	1 cut(s)	818
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	524, 638
Bst6I	CTCTTC	4 cut(s)	141, 747, 780, 873
BstACI	GRCGYC	1 cut(s)	120
BstAUI	TGTACA	1 cut(s)	1015
BstC8I	GCNNGC	2 cut(s)	200, 272
BstDEI	CTNAG	7 cut(s)	8, 68, 101, 183, 611, 668, 740
BstF5I	GGATG	1 cut(s)	95
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	8 cut(s)	67, 303, 314, 508, 691, 809, 936, 946
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	8 cut(s)	64, 300, 311, 505, 688, 806, 933, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 195
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	306
BstSLI	GKGCMC	1 cut(s)	461
BstV1I	GCAGC	1 cut(s)	942
BstX2I	RGATCY	3 cut(s)	300, 505, 943
BstYI	RGATCY	3 cut(s)	300, 505, 943
BsuI	GTATCC	1 cut(s)	472
BtsCI	GGATG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	593
Cac8I	GCNNGC	2 cut(s)	200, 272
CaiI	CAGNNNCTG	1 cut(s)	975
CciI	TCATGA	1 cut(s)	364
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	1030
CseI	GACGC	3 cut(s)	109, 562, 1019
Csp6I	GTAC	5 cut(s)	98, 393, 426, 1016, 1040
CviAII	CATG	4 cut(s)	157, 320, 365, 550
CviQI	GTAC	5 cut(s)	98, 393, 426, 1016, 1040
DdeI	CTNAG	7 cut(s)	8, 68, 101, 183, 611, 668, 740
DpnI	GATC	8 cut(s)	66, 302, 313, 507, 690, 808, 935, 945
DpnII	GATC	8 cut(s)	64, 300, 311, 505, 688, 806, 933, 943
DraI	TTTAAA	2 cut(s)	52, 1059
DrdI	GACNNNNNNGTC	1 cut(s)	652
DseDI	GACNNNNNNGTC	1 cut(s)	652
Eam1104I	CTCTTC	4 cut(s)	141, 747, 780, 873
EarI	CTCTTC	4 cut(s)	141, 747, 780, 873
Eco130I	CCWWGG	4 cut(s)	210, 474, 780, 1035
Eco47I	GGWCC	1 cut(s)	1030
Eco47III	AGCGCT	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	4 cut(s)	210, 474, 780, 1035
EcoT22I	ATGCAT	1 cut(s)	321
ErhI	CCWWGG	4 cut(s)	210, 474, 780, 1035
FaeI	CATG	4 cut(s)	160, 323, 368, 553
FalI	AAGNNNNNCTT	4 cut(s)	715, 747, 905, 937
FaqI	GGGAC	1 cut(s)	621
FatI	CATG	4 cut(s)	156, 319, 364, 549
FbaI	TGATCA	1 cut(s)	933
Fnu4HI	GCNGC	1 cut(s)	956
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	956
FspBI	CTAG	2 cut(s)	203, 342
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	1 cut(s)	956
GsuI	CTGGAG	2 cut(s)	641, 978
HaeII	RGCGCY	1 cut(s)	183
HapII	CCGG	1 cut(s)	979
HgaI	GACGC	3 cut(s)	109, 562, 1019
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	160, 323, 368, 553
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	678
HindII	GTYRAC	1 cut(s)	678
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	6 cut(s)	22, 399, 466, 609, 865, 972
HpaII	CCGG	1 cut(s)	979
HphI	GGTGA	3 cut(s)	105, 650, 958
Hpy166II	GTNNAC	4 cut(s)	98, 337, 678, 966
Hpy188I	TCNGA	7 cut(s)	64, 104, 300, 465, 688, 743, 950
Hpy188III	TCNNGA	5 cut(s)	138, 365, 810, 818, 995
Hpy8I	GTNNAC	4 cut(s)	98, 337, 678, 966
HpyAV	CCTTC	3 cut(s)	797, 853, 1058
HpyCH4III	ACNGT	2 cut(s)	524, 638
HpyCH4IV	ACGT	3 cut(s)	369, 428, 568
HpyCH4V	TGCA	4 cut(s)	319, 377, 535, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 195
HpyF3I	CTNAG	7 cut(s)	8, 68, 101, 183, 611, 668, 740
HpySE526I	ACGT	3 cut(s)	369, 428, 568
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	160, 323, 368, 553
HspAI	GCGC	1 cut(s)	180
Ksp22I	TGATCA	1 cut(s)	933
Kzo9I	GATC	8 cut(s)	64, 300, 311, 505, 688, 806, 933, 943
LguI	GCTCTTC	1 cut(s)	747
LmnI	GCTCC	2 cut(s)	568, 997
Lsp1109I	GCAGC	1 cut(s)	942
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	2 cut(s)	203, 342
MaeII	ACGT	3 cut(s)	369, 428, 568
MaeIII	GTNAC	2 cut(s)	344, 654
MalI	GATC	8 cut(s)	66, 302, 313, 507, 690, 808, 935, 945
MboI	GATC	8 cut(s)	64, 300, 311, 505, 688, 806, 933, 943
MboII	GAAGA	8 cut(s)	158, 637, 723, 727, 764, 797, 836, 860
MfeI	CAATTG	2 cut(s)	35, 929
MflI	RGATCY	3 cut(s)	300, 505, 943
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	9 cut(s)	27, 35, 163, 226, 448, 745, 837, 850, 929
MlyI	GAGTC	4 cut(s)	31, 603, 859, 966
MnlI	CCTC	6 cut(s)	438, 471, 511, 749, 814, 936
Mph1103I	ATGCAT	1 cut(s)	321
MroXI	GAANNNNTTC	3 cut(s)	109, 237, 294
MseI	TTAA	2 cut(s)	51, 1058
MslI	CAYNNNNRTG	1 cut(s)	548
MspI	CCGG	1 cut(s)	979
MspR9I	CCNGG	1 cut(s)	117
MunI	CAATTG	2 cut(s)	35, 929
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	186, 195
NdeII	GATC	8 cut(s)	64, 300, 311, 505, 688, 806, 933, 943
NlaIII	CATG	4 cut(s)	160, 323, 368, 553
NlaIV	GGNNCC	3 cut(s)	564, 993, 1032
NmuCI	GTSAC	2 cut(s)	344, 654
NsiI	ATGCAT	1 cut(s)	321
PagI	TCATGA	1 cut(s)	364
PciSI	GCTCTTC	1 cut(s)	747
PdmI	GAANNNNTTC	3 cut(s)	109, 237, 294
PfeI	GAWTC	2 cut(s)	399, 466
PflMI	CCANNNNNTGG	2 cut(s)	251, 1001
PkrI	GCNGC	1 cut(s)	957
PleI	GAGTC	4 cut(s)	30, 603, 859, 966
PpsI	GAGTC	4 cut(s)	30, 603, 859, 966
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	564, 993, 1032
PspPI	GGNCC	1 cut(s)	1030
PstNI	CAGNNNCTG	1 cut(s)	975
PsuI	RGATCY	3 cut(s)	300, 505, 943
RsaI	GTAC	5 cut(s)	99, 394, 427, 1017, 1041
RsaNI	GTAC	5 cut(s)	98, 393, 426, 1016, 1040
RseI	CAYNNNNRTG	1 cut(s)	548
SapI	GCTCTTC	1 cut(s)	747
SaqAI	TTAA	2 cut(s)	51, 1058
SatI	GCNGC	1 cut(s)	956
Sau3AI	GATC	8 cut(s)	64, 300, 311, 505, 688, 806, 933, 943
Sau96I	GGNCC	1 cut(s)	1030
SchI	GAGTC	4 cut(s)	31, 603, 859, 966
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	461
SfaNI	GCATC	1 cut(s)	364
SfcI	CTRYAG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	1030
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	3 cut(s)	355, 515, 602
SmoI	CTYRAG	3 cut(s)	355, 515, 602
Sse9I	AATT	9 cut(s)	27, 35, 163, 226, 448, 745, 837, 850, 929
SsiI	CCGC	1 cut(s)	329
SspMI	CTAG	2 cut(s)	203, 342
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	4 cut(s)	210, 474, 780, 1035
TaaI	ACNGT	2 cut(s)	524, 638
TaiI	ACGT	3 cut(s)	372, 431, 571
TasI	AATT	9 cut(s)	27, 35, 163, 226, 448, 745, 837, 850, 929
TatI	WGTACW	2 cut(s)	97, 1015
TfiI	GAWTC	2 cut(s)	399, 466
Tru1I	TTAA	2 cut(s)	51, 1058
Tru9I	TTAA	2 cut(s)	51, 1058
TscAI	CASTG	1 cut(s)	600
TseFI	GTSAC	2 cut(s)	344, 654
TseI	GCWGC	1 cut(s)	955
Tsp45I	GTSAC	2 cut(s)	344, 654
TspDTI	ATGAA	5 cut(s)	336, 353, 849, 860, 877
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	1 cut(s)	600
Van91I	CCANNNNNTGG	2 cut(s)	251, 1001
VpaK11BI	GGWCC	1 cut(s)	1030
XapI	RAATTY	4 cut(s)	27, 448, 745, 850
XmnI	GAANNNNTTC	3 cut(s)	109, 237, 294
XspI	CTAG	2 cut(s)	203, 342
Zsp2I	ATGCAT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.