Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0009754

Physical Location & Seq

Genomic Coordinates Reverse (-)

22236474 .. 22241431

Gene Structure 4958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1106300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAATACAGAAAATAGCACACCGGCAAGAAAACCTTTGGGCAGAGGGAGGATTGAGATCAAGAAGATTGAGAATCTGAGTAGCAGGCAAGTCACGTTCTCGAAACGGCGTAATGGGTTGCTCAAGAAGGCCAAAGAATTGTCAGTTCTTTGTGATGCTGAGGTTGCTGTCATCGTTTTCTCCAGCACCGGAAAACTATATGAATTCTCAAGCACCAGCATGGACCACACTCTTTCAAGGTACAACAAGGGGGGCCTAATAGAGCACCCACAAAAAGAGCGCTCTGGTGACAATGAACCTGTAATGCAGGCAACCAACTCTAACTGTAATGTAAATGCACTACAGAATGAGATTGCAACACTACGCTTGACATGCACGCGGATGACGGGTAAGGAACTGGACGGCGTGAGTTTGAAAGACCTGCAGCGTCTAGAGGACCAACTAAGTGAGGGGATATTATGTGTCAAGGACAAGAAGGAGGAAATACTTATGGAGAAGCTCAAGAAGTCCAGATTACAGGAACAAAAGGCTATGGAAGAGAGCGAGAATCTGCGCAAAGAGCTTGAGGAGATGCGGCAAAATAAGAGGTCGAATTGGCCAATTGTGGTTGCATCCCATCCTTTGGAGAGGAGGTTTTCCTGCACAAGCTCTAAAGCCGTTTCCAGTTACGAAGCAGAAGAAAGTGACCATTCAGACACTTCTTTGCATTTAGGGTTATCGTCAGATGTTCATCGCAAGAGGAAGGCAGCTAAGATTGAACACAATTCTAACGATTCAGGGAGTCAAGTGGCCTCAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048519 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

267

Amino Acids

29.98

Weight (kDa)

8.7

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	22 - 69	5.6e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	103 - 188	6.5e-14	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57390 AT3G57390 AT3G57390
fragaria_vesca	FvH4_4g20680 FvH4_4g20680
malus_domestica	MD00G1106300.v1.1
prunus_persica	Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1
pyrus_communis	pycom14g06350
rosa_chinensis	RchiOBHm_Chr3g0483031
rosa_laevigata	RLG00000023305
rosa_multiflora	Rmu_sc0000441.1_g000133
rosa_roxburghii	Rroxscaffold_6G00398700
rosa_rugosa	Rorug03G0203800 Rorug03G0203900
rosa_samantha	Rh3AG251800 Rh3BG288400 Rh3CG286000 Rh3DG281600
rosa_wichuraiana	Rw3G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	554
Acc36I	ACCTGC	1 cut(s)	429
AccB7I	CCANNNNNTGG	1 cut(s)	622
AccII	CGCG	1 cut(s)	379
AciI	CCGC	2 cut(s)	379, 574
AcoI	YGGCCR	1 cut(s)	596
AcsI	RAATTY	1 cut(s)	203
AfaI	GTAC	1 cut(s)	242
AfeI	AGCGCT	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	622
AgsI	TTSAA	3 cut(s)	237, 415, 758
AluBI	AGCT	4 cut(s)	499, 562, 648, 749
AluI	AGCT	4 cut(s)	499, 562, 648, 749
Alw21I	GWGCWC	1 cut(s)	267
Aor51HI	AGCGCT	1 cut(s)	281
AoxI	GGCC	4 cut(s)	129, 253, 596, 789
ApeKI	GCWGC	2 cut(s)	424, 746
ApoI	RAATTY	1 cut(s)	203
AspLEI	GCGC	2 cut(s)	282, 555
AspS9I	GGNCC	3 cut(s)	223, 253, 436
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	2 cut(s)	223, 436
BalI	TGGCCA	1 cut(s)	598
Bbv12I	GWGCWC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	159
BbvI	GCAGC	2 cut(s)	436, 758
BccI	CCATC	1 cut(s)	624
BceAI	ACGGC	3 cut(s)	122, 418, 641
BfaI	CTAG	1 cut(s)	431
BfmI	CTRYAG	2 cut(s)	341, 422
BfoI	RGCGCY	1 cut(s)	283
BfuAI	ACCTGC	1 cut(s)	429
BisI	GCNGC	3 cut(s)	425, 575, 747
BlsI	GCNGC	3 cut(s)	426, 576, 748
Bme18I	GGWCC	2 cut(s)	223, 436
BmgT120I	GGNCC	3 cut(s)	223, 253, 436
BmiI	GGNNCC	1 cut(s)	254
BmsI	GCATC	3 cut(s)	145, 561, 620
BpmI	CTGGAG	1 cut(s)	166
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	4 cut(s)	107, 193, 485, 584
BsaBI	GATNNNNATC	2 cut(s)	56, 729
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	1 cut(s)	622
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	2 cut(s)	402, 663
Bse8I	GATNNNNATC	2 cut(s)	56, 729
BseGI	GGATG	3 cut(s)	387, 611, 616
BseJI	GATNNNNATC	2 cut(s)	56, 729
BseLI	CCNNNNNNNGG	1 cut(s)	622
BseMII	CTCAG	2 cut(s)	68, 150
BseNI	ACTGG	2 cut(s)	402, 663
BseRI	GAGGAG	2 cut(s)	581, 643
BseXI	GCAGC	2 cut(s)	436, 758
BsgI	GTGCAG	1 cut(s)	625
Bsh1236I	CGCG	1 cut(s)	379
BshFI	GGCC	4 cut(s)	131, 255, 598, 791
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	2 cut(s)	23, 189
BslI	CCNNNNNNNGG	1 cut(s)	622
BsnI	GGCC	4 cut(s)	131, 255, 598, 791
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	2 cut(s)	379, 574
BspANI	GGCC	4 cut(s)	131, 255, 598, 791
BspCNI	CTCAG	2 cut(s)	69, 151
BspFNI	CGCG	1 cut(s)	379
BspLI	GGNNCC	1 cut(s)	254
BspMAI	CTGCAG	1 cut(s)	426
BspMI	ACCTGC	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	2 cut(s)	402, 663
BssAI	RCCGGY	1 cut(s)	22
BssMI	GATC	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	531
BstC8I	GCNNGC	3 cut(s)	86, 309, 377
BstDEI	CTNAG	5 cut(s)	77, 159, 443, 750, 793
BstF5I	GGATG	3 cut(s)	387, 611, 616
BstFNI	CGCG	1 cut(s)	379
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	2 cut(s)	282, 555
BstKTI	GATC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 372, 559
BstNSI	RCATGY	1 cut(s)	375
BstSFI	CTRYAG	2 cut(s)	341, 422
BstUI	CGCG	1 cut(s)	379
BstV1I	GCAGC	2 cut(s)	436, 758
BsuRI	GGCC	4 cut(s)	131, 255, 598, 791
BtgZI	GCGATG	1 cut(s)	716
BtsCI	GGATG	3 cut(s)	387, 611, 616
BveI	ACCTGC	1 cut(s)	429
Cac8I	GCNNGC	3 cut(s)	86, 309, 377
CfoI	GCGC	2 cut(s)	282, 555
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	3 cut(s)	223, 253, 436
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	2 cut(s)	220, 372
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	5 cut(s)	77, 159, 443, 750, 793
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
EaeI	YGGCCR	1 cut(s)	596
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco47I	GGWCC	2 cut(s)	223, 436
Eco47III	AGCGCT	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	203
FaeI	CATG	2 cut(s)	223, 375
FaiI	YATR	7 cut(s)	199, 201, 221, 373, 460, 491, 533
FalI	AAGNNNNNCTT	2 cut(s)	19, 51
FatI	CATG	2 cut(s)	219, 371
Fnu4HI	GCNGC	3 cut(s)	425, 575, 747
FokI	GGATG	3 cut(s)	394, 598, 603
Fsp4HI	GCNGC	3 cut(s)	425, 575, 747
FspBI	CTAG	1 cut(s)	431
FspI	TGCGCA	1 cut(s)	554
GlaI	GCGC	2 cut(s)	281, 554
GluI	GCNGC	3 cut(s)	425, 575, 747
GsuI	CTGGAG	1 cut(s)	166
HaeII	RGCGCY	1 cut(s)	283
HaeIII	GGCC	4 cut(s)	131, 255, 598, 791
HapII	CCGG	2 cut(s)	23, 189
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	2 cut(s)	282, 555
Hin1II	CATG	2 cut(s)	223, 375
Hin6I	GCGC	2 cut(s)	280, 553
HinP1I	GCGC	2 cut(s)	280, 553
HinfI	GANTC	4 cut(s)	73, 547, 773, 781
HpaII	CCGG	2 cut(s)	23, 189
HphI	GGTGA	1 cut(s)	299
Hpy188I	TCNGA	4 cut(s)	78, 694, 724, 796
Hpy188III	TCNNGA	6 cut(s)	61, 100, 124, 431, 502, 510
HpyAV	CCTTC	3 cut(s)	121, 469, 736
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	8 cut(s)	307, 338, 356, 375, 424, 611, 642, 706
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 372, 559
HpyF3I	CTNAG	5 cut(s)	77, 159, 443, 750, 793
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	223, 375
HspAI	GCGC	2 cut(s)	280, 553
Kzo9I	GATC	1 cut(s)	57
Lsp1109I	GCAGC	2 cut(s)	436, 758
LweI	GCATC	3 cut(s)	145, 561, 620
MaeI	CTAG	1 cut(s)	431
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	4 cut(s)	91, 287, 665, 683
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	3 cut(s)	76, 548, 689
MfeI	CAATTG	1 cut(s)	600
MhlI	GDGCHC	1 cut(s)	267
MlsI	TGGCCA	1 cut(s)	598
MluCI	AATT	5 cut(s)	137, 203, 592, 600, 763
MluNI	TGGCCA	1 cut(s)	598
MlyI	GAGTC	1 cut(s)	790
Mox20I	TGGCCA	1 cut(s)	598
MscI	TGGCCA	1 cut(s)	598
MslI	CAYNNNNRTG	2 cut(s)	218, 380
Msp20I	TGGCCA	1 cut(s)	598
MspI	CCGG	2 cut(s)	23, 189
MunI	CAATTG	1 cut(s)	600
MvnI	CGCG	1 cut(s)	379
MwoI	GCNNNNNNNGC	3 cut(s)	164, 372, 559
NdeII	GATC	1 cut(s)	57
NlaIII	CATG	2 cut(s)	223, 375
NlaIV	GGNNCC	1 cut(s)	254
NmuCI	GTSAC	3 cut(s)	91, 287, 683
NsbI	TGCGCA	1 cut(s)	554
NspI	RCATGY	1 cut(s)	375
PfeI	GAWTC	3 cut(s)	73, 547, 773
PflMI	CCANNNNNTGG	1 cut(s)	622
PkrI	GCNGC	3 cut(s)	426, 576, 748
PleI	GAGTC	1 cut(s)	789
PpsI	GAGTC	1 cut(s)	789
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	3 cut(s)	223, 253, 436
PstI	CTGCAG	1 cut(s)	426
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
RseI	CAYNNNNRTG	2 cut(s)	218, 380
SatI	GCNGC	3 cut(s)	425, 575, 747
Sau3AI	GATC	1 cut(s)	57
Sau96I	GGNCC	3 cut(s)	223, 253, 436
SchI	GAGTC	1 cut(s)	790
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	3 cut(s)	145, 561, 620
SfcI	CTRYAG	2 cut(s)	341, 422
SinI	GGWCC	2 cut(s)	223, 436
SmiMI	CAYNNNNRTG	2 cut(s)	218, 380
SmlI	CTYRAG	4 cut(s)	122, 208, 500, 563
SmoI	CTYRAG	4 cut(s)	122, 208, 500, 563
Sse9I	AATT	5 cut(s)	137, 203, 592, 600, 763
SsiI	CCGC	2 cut(s)	379, 574
SspMI	CTAG	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	2 cut(s)	101, 590
TasI	AATT	5 cut(s)	137, 203, 592, 600, 763
TauI	GCSGC	1 cut(s)	577
TfiI	GAWTC	3 cut(s)	73, 547, 773
TseFI	GTSAC	3 cut(s)	91, 287, 683
TseI	GCWGC	2 cut(s)	424, 746
Tsp45I	GTSAC	3 cut(s)	91, 287, 683
TspDTI	ATGAA	4 cut(s)	17, 216, 309, 719
Van91I	CCANNNNNTGG	1 cut(s)	622
VpaK11BI	GGWCC	2 cut(s)	223, 436
XapI	RAATTY	1 cut(s)	203
XbaI	TCTAGA	1 cut(s)	430
XceI	RCATGY	1 cut(s)	375
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.