Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000441.1

Orthogroup ID

OG0009754

Physical Location & Seq

Genomic Coordinates Forward (+)

487982 .. 490658

Gene Structure 2677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000441.1_g000133.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atggtggggaacgatacaggacgaaactcacagaccagaaagatgggtcgggggaaaattgagatcaagaagattgaaaatctcagtagcaggcaagtcacgttctcaaaacgccgcagcggattgttcaagaaggcagccgaattgtcagtactatgcgatgccgagattgcagtcataattttttctcaaactggaaagctttatgaacaatcaagcaccaggtatcacaatttttcaaacaagcagggcctcctccaattagagtattcttcagaagagcgcccccatgaatctgctgaagaggagcagagatttgattcaagcgcactgcagagaaaatttgaagcaatgcagcaaaagattgaagcattacagttggaactctgtcggatgaagggtcagaaactggatagcctgagcttaaatgacctgtatgagctggagaaacaacaaatggaaggggaattagccgttaagaacaagaaggaggaaatactttcggaggagaaacagaagactacaaaggagcatgagaaggctatgcaaaagattgagaatctggaaagagagattgaggaattgaggaggcaaaactatgtgcgcccttctatcattgaatcccatcctcctaagaagaggcttttatactttacaaactcatccaaagccgtttccaattgttcaactgcctctgagcacgaaagtgacgagcattcggacacttctttgcaattggggtacgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048519 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

249

Amino Acids

28.81

Weight (kDa)

7.03

Isoelectric Point (pI)

66.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57390 AT3G57390 AT3G57390
fragaria_vesca	FvH4_4g20680 FvH4_4g20680
malus_domestica	MD00G1106300.v1.1
prunus_persica	Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1
pyrus_communis	pycom14g06350
rosa_chinensis	RchiOBHm_Chr3g0483031
rosa_laevigata	RLG00000023305
rosa_multiflora	Rmu_sc0000441.1_g000133
rosa_roxburghii	Rroxscaffold_6G00398700
rosa_rugosa	Rorug03G0203800 Rorug03G0203900
rosa_samantha	Rh3AG251800 Rh3BG288400 Rh3CG286000 Rh3DG281600
rosa_wichuraiana	Rw3G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	115, 120
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	2 cut(s)	258, 321
AfaI	GTAC	2 cut(s)	153, 743
AgsI	TTSAA	8 cut(s)	77, 130, 240, 324, 347, 368, 620, 687
AjnI	CCWGG	1 cut(s)	221
AleI	CACNNNNGTG	1 cut(s)	705
AluBI	AGCT	3 cut(s)	202, 423, 442
AluI	AGCT	3 cut(s)	202, 423, 442
Alw21I	GWGCWC	1 cut(s)	702
AlwNI	CAGNNNCTG	1 cut(s)	409
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	3 cut(s)	117, 137, 355
ApoI	RAATTY	1 cut(s)	341
AspLEI	GCGC	3 cut(s)	285, 329, 606
AspS9I	GGNCC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	702
BbvI	GCAGC	3 cut(s)	129, 149, 367
BccI	CCATC	2 cut(s)	37, 633
BceAI	ACGGC	2 cut(s)	458, 656
BciT130I	CCWGG	1 cut(s)	223
BfmI	CTRYAG	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	286
BisI	GCNGC	4 cut(s)	115, 118, 138, 356
BlsI	GCNGC	4 cut(s)	116, 119, 139, 357
BmcAI	AGTACT	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	250
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	524
BpmI	CTGGAG	1 cut(s)	464
Bpu10I	CCTNAGC	1 cut(s)	419
BsaAI	YACGTR	1 cut(s)	745
Bse1I	ACTGG	2 cut(s)	199, 414
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	223
BseGI	GGATG	3 cut(s)	399, 625, 662
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	3 cut(s)	97, 410, 687
BseNI	ACTGG	2 cut(s)	199, 414
BseRI	GAGGAG	4 cut(s)	245, 320, 521, 601
BseXI	GCAGC	3 cut(s)	129, 149, 367
BshFI	GGCC	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	702
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	702
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	2 cut(s)	115, 120
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	3 cut(s)	96, 411, 688
BspMAI	CTGCAG	1 cut(s)	336
BspQI	GCTCTTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	357
BsrI	ACTGG	2 cut(s)	199, 414
BssMI	GATC	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	1 cut(s)	378
Bst6I	CTCTTC	3 cut(s)	273, 297, 632
BstBAI	YACGTR	1 cut(s)	745
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	4 cut(s)	83, 419, 633, 696
BstF5I	GGATG	3 cut(s)	399, 625, 662
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	3 cut(s)	285, 329, 606
BstKTI	GATC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	332
BstSNI	TACGTA	1 cut(s)	745
BstV1I	GCAGC	3 cut(s)	129, 149, 367
BstV2I	GAAGAC	1 cut(s)	524
BstXI	CCANNNNNNTGG	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	399, 625, 662
BtsI	GCAGTG	1 cut(s)	329
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	92
CaiI	CAGNNNCTG	1 cut(s)	409
CfoI	GCGC	3 cut(s)	285, 329, 606
Cfr13I	GGNCC	1 cut(s)	250
CsiI	ACCWGGT	1 cut(s)	221
Csp6I	GTAC	2 cut(s)	152, 742
CviAII	CATG	2 cut(s)	290, 533
CviQI	GTAC	2 cut(s)	152, 742
DdeI	CTNAG	4 cut(s)	83, 419, 633, 696
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
Eam1104I	CTCTTC	3 cut(s)	273, 297, 632
EarI	CTCTTC	3 cut(s)	273, 297, 632
Eco105I	TACGTA	1 cut(s)	745
Eco57I	CTGAAG	2 cut(s)	258, 321
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	221
FaeI	CATG	2 cut(s)	293, 536
FatI	CATG	2 cut(s)	289, 532
Fnu4HI	GCNGC	4 cut(s)	115, 118, 138, 356
FokI	GGATG	3 cut(s)	406, 612, 649
Fsp4HI	GCNGC	4 cut(s)	115, 118, 138, 356
GlaI	GCGC	3 cut(s)	284, 328, 605
GluI	GCNGC	4 cut(s)	115, 118, 138, 356
GsuI	CTGGAG	1 cut(s)	464
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	1 cut(s)	252
HhaI	GCGC	3 cut(s)	285, 329, 606
Hin1II	CATG	2 cut(s)	293, 536
Hin6I	GCGC	3 cut(s)	283, 327, 604
HinP1I	GCGC	3 cut(s)	283, 327, 604
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	4 cut(s)	293, 320, 559, 620
Hpy188I	TCNGA	6 cut(s)	277, 393, 405, 505, 697, 721
Hpy188III	TCNNGA	3 cut(s)	67, 130, 563
HpyAV	CCTTC	6 cut(s)	127, 391, 455, 481, 532, 618
HpyCH4III	ACNGT	1 cut(s)	378
HpyCH4IV	ACGT	2 cut(s)	101, 744
HpyCH4V	TGCA	5 cut(s)	173, 334, 355, 547, 733
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	4 cut(s)	83, 419, 633, 696
HpySE526I	ACGT	2 cut(s)	101, 744
Hsp92II	CATG	2 cut(s)	293, 536
HspAI	GCGC	3 cut(s)	283, 327, 604
Kzo9I	GATC	1 cut(s)	63
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	2 cut(s)	307, 529
Lsp1109I	GCAGC	3 cut(s)	129, 149, 367
LweI	GCATC	1 cut(s)	151
MabI	ACCWGGT	1 cut(s)	221
MaeII	ACGT	2 cut(s)	101, 744
MaeIII	GTNAC	2 cut(s)	97, 707
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	6 cut(s)	82, 264, 290, 314, 529, 649
MfeI	CAATTG	2 cut(s)	679, 734
MhlI	GDGCHC	1 cut(s)	702
MmeI	TCCRAC	2 cut(s)	360, 371
MseI	TTAA	2 cut(s)	425, 477
MslI	CAYNNNNRTG	1 cut(s)	705
MspA1I	CMGCKG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	223
MunI	CAATTG	2 cut(s)	679, 734
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	2 cut(s)	293, 536
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	2 cut(s)	97, 707
OliI	CACNNNNGTG	1 cut(s)	705
PciSI	GCTCTTC	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	708
PctI	GAATGC	1 cut(s)	715
PfeI	GAWTC	4 cut(s)	293, 320, 559, 620
PkrI	GCNGC	4 cut(s)	116, 119, 139, 357
Ppu21I	YACGTR	1 cut(s)	745
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	250
PstI	CTGCAG	1 cut(s)	336
PstNI	CAGNNNCTG	1 cut(s)	409
RsaI	GTAC	2 cut(s)	153, 743
RsaNI	GTAC	2 cut(s)	152, 742
RseI	CAYNNNNRTG	1 cut(s)	705
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	425, 477
SatI	GCNGC	4 cut(s)	115, 118, 138, 356
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	250
ScaI	AGTACT	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	702
SetI	ASST	7 cut(s)	104, 204, 227, 425, 435, 444, 747
SexAI	ACCWGGT	1 cut(s)	221
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	332
SmiMI	CAYNNNNRTG	1 cut(s)	705
SnaBI	TACGTA	1 cut(s)	745
SsiI	CCGC	2 cut(s)	115, 120
StyD4I	CCNGG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	378
TaiI	ACGT	2 cut(s)	104, 747
TatI	WGTACW	1 cut(s)	151
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	4 cut(s)	293, 320, 559, 620
Tru1I	TTAA	2 cut(s)	425, 477
Tru9I	TTAA	2 cut(s)	425, 477
TscAI	CASTG	1 cut(s)	336
TseFI	GTSAC	2 cut(s)	97, 707
TseI	GCWGC	3 cut(s)	117, 137, 355
Tsp45I	GTSAC	2 cut(s)	97, 707
TspDTI	ATGAA	3 cut(s)	222, 306, 410
TspRI	CASTG	1 cut(s)	336
XapI	RAATTY	1 cut(s)	341
ZrmI	AGTACT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.