Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009754

Physical Location & Seq

Genomic Coordinates Forward (+)

21548843 .. 21551911

Gene Structure 3069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023305

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGGTCGGGGGAAAATTGAGATCAAGAAGATTGAAAATCTCAGTAGCAGGCAAGTCACGTTCTCGAAACGCCGCAGCGGATTGTTCAAGAAGGCAGCCGAATTGTCAGTACTATGCGATGCCGAGATTGCAGTCATAATTTTTTCTCAAACTGGAAAGCTTTATGAACAATCAAGCACCAGCATGGACAAAATTCTTTCGAGGTATCACAATTTTTCAAACAAGCAGGGCCTCCTCCAATTAGAGTATTCTTCAGAAGAGCGCCCCCATGAATCTGCTGAAGAGGAGCCGAAATTTGATTCAAGCGCATTGCAGAGAAAATTTGAAGCAATGCAGCAAAAGATTGAAGCATTACAGTTGGAACTCTGTCGGATGAAGGGTCAGAAACTGGATGGGCTGAGCTTAAATGACCTGTATGAGCTGGAGAAACAACAAATGGAAGGGGAATTAGCTGTTAAGAACAAGAAGGAGGAAATACTTTCGGAGGAGAAACAGAAGACTACAAAGGAGCATGAGAAGGCTATGCAAAAGATTGAGAATCTGGAAAGAGAGATTGAGGAATTGAGGAGGCAAAACTATGTGCGCCCATCTATCATTGAATCCCATCCTCCTAAGAAGAGGCTTTTATACTTTACAAACTCATCCAAAGCCGTTTCCAATTGTTCAACTGCTTCTGAGCACGAAAGTGACGAGCATTCGGACACTTCTTTGCAATTGGGGTTTAATTTCTCAGGTTGTCATCATCCAAGTGTTGGTCAGTGCAAGAGGAAAGAAGCCAGCATTCGCCCCAGTTCTAATGATTCTGGGAGTCAAGTAGTCTCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048519 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

276

Amino Acids

31.42

Weight (kDa)

6.74

Isoelectric Point (pI)

65.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 56	6.1e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	101 - 185	6.1e-07	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57390 AT3G57390 AT3G57390
fragaria_vesca	FvH4_4g20680 FvH4_4g20680
malus_domestica	MD00G1106300.v1.1
prunus_persica	Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1
pyrus_communis	pycom14g06350
rosa_chinensis	RchiOBHm_Chr3g0483031
rosa_laevigata	RLG00000023305
rosa_multiflora	Rmu_sc0000441.1_g000133
rosa_roxburghii	Rroxscaffold_6G00398700
rosa_rugosa	Rorug03G0203800 Rorug03G0203900
rosa_samantha	Rh3AG251800 Rh3BG288400 Rh3CG286000 Rh3DG281600
rosa_wichuraiana	Rw3G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	752
AciI	CCGC	2 cut(s)	73, 78
AcsI	RAATTY	3 cut(s)	192, 293, 320
AcuI	CTGAAG	2 cut(s)	237, 300
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	752
AgsI	TTSAA	8 cut(s)	35, 88, 219, 303, 326, 347, 599, 666
AleI	CACNNNNGTG	1 cut(s)	684
AluBI	AGCT	4 cut(s)	160, 402, 421, 452
AluI	AGCT	4 cut(s)	160, 402, 421, 452
Alw21I	GWGCWC	1 cut(s)	681
Alw26I	GTCTC	1 cut(s)	823
AlwNI	CAGNNNCTG	1 cut(s)	388
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	3 cut(s)	75, 95, 334
ApoI	RAATTY	3 cut(s)	192, 293, 320
AspLEI	GCGC	3 cut(s)	264, 308, 585
AspS9I	GGNCC	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	681
BbvI	GCAGC	3 cut(s)	87, 107, 346
BccI	CCATC	3 cut(s)	386, 595, 612
BceAI	ACGGC	1 cut(s)	635
BcoDI	GTCTC	1 cut(s)	823
BfoI	RGCGCY	1 cut(s)	265
BisI	GCNGC	4 cut(s)	73, 76, 96, 335
BlpI	GCTNAGC	1 cut(s)	398
BlsI	GCNGC	4 cut(s)	74, 77, 97, 336
BmcAI	AGTACT	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	288
BmrI	ACTGGG	1 cut(s)	783
BmsI	GCATC	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	783
BpiI	GAAGAC	1 cut(s)	503
BpmI	CTGGAG	1 cut(s)	443
Bpu1102I	GCTNAGC	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	1 cut(s)	752
Bse1I	ACTGG	3 cut(s)	157, 393, 789
Bse3DI	GCAATG	2 cut(s)	308, 336
BseGI	GGATG	5 cut(s)	378, 397, 604, 641, 742
BseLI	CCNNNNNNNGG	1 cut(s)	752
BseMI	GCAATG	2 cut(s)	308, 336
BseMII	CTCAG	4 cut(s)	55, 389, 666, 744
BseNI	ACTGG	3 cut(s)	157, 393, 789
BseRI	GAGGAG	4 cut(s)	224, 299, 500, 580
BseXI	GCAGC	3 cut(s)	87, 107, 346
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	681
BslI	CCNNNNNNNGG	1 cut(s)	752
BsmAI	GTCTC	1 cut(s)	823
BsmI	GAATGC	2 cut(s)	694, 780
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp143I	GATC	1 cut(s)	21
Bsp1720I	GCTNAGC	1 cut(s)	398
BspACI	CCGC	2 cut(s)	73, 78
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	4 cut(s)	54, 390, 667, 743
BspLI	GGNNCC	1 cut(s)	288
BspQI	GCTCTTC	1 cut(s)	252
BsrDI	GCAATG	2 cut(s)	308, 336
BsrI	ACTGG	3 cut(s)	157, 393, 789
BssMI	GATC	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	357
Bst6I	CTCTTC	3 cut(s)	252, 276, 611
BstC8I	GCNNGC	2 cut(s)	50, 778
BstDEI	CTNAG	6 cut(s)	41, 398, 612, 675, 730, 820
BstF5I	GGATG	5 cut(s)	378, 397, 604, 641, 742
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	3 cut(s)	264, 308, 585
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	823
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstV1I	GCAGC	3 cut(s)	87, 107, 346
BstV2I	GAAGAC	1 cut(s)	503
BsuRI	GGCC	1 cut(s)	231
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	5 cut(s)	378, 397, 604, 641, 742
BtsIMutI	CAGTG	1 cut(s)	764
Cac8I	GCNNGC	2 cut(s)	50, 778
CaiI	CAGNNNCTG	1 cut(s)	388
CfoI	GCGC	3 cut(s)	264, 308, 585
Cfr13I	GGNCC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	3 cut(s)	184, 269, 512
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	6 cut(s)	41, 398, 612, 675, 730, 820
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
Eam1104I	CTCTTC	3 cut(s)	252, 276, 611
EarI	CTCTTC	3 cut(s)	252, 276, 611
Eco57I	CTGAAG	2 cut(s)	237, 300
EcoO109I	RGGNCCY	1 cut(s)	229
FaeI	CATG	3 cut(s)	187, 272, 515
FatI	CATG	3 cut(s)	183, 268, 511
Fnu4HI	GCNGC	4 cut(s)	73, 76, 96, 335
FokI	GGATG	5 cut(s)	385, 404, 591, 628, 729
Fsp4HI	GCNGC	4 cut(s)	73, 76, 96, 335
GlaI	GCGC	3 cut(s)	263, 307, 584
GluI	GCNGC	4 cut(s)	73, 76, 96, 335
GsuI	CTGGAG	1 cut(s)	443
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	1 cut(s)	231
HhaI	GCGC	3 cut(s)	264, 308, 585
Hin1II	CATG	3 cut(s)	187, 272, 515
Hin6I	GCGC	3 cut(s)	262, 306, 583
HinP1I	GCGC	3 cut(s)	262, 306, 583
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	6 cut(s)	272, 299, 538, 599, 800, 808
Hpy188I	TCNGA	7 cut(s)	256, 372, 384, 484, 676, 700, 823
Hpy188III	TCNNGA	4 cut(s)	25, 64, 88, 542
HpyAV	CCTTC	5 cut(s)	85, 370, 434, 460, 511
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	6 cut(s)	131, 313, 334, 526, 712, 762
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	6 cut(s)	41, 398, 612, 675, 730, 820
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	3 cut(s)	187, 272, 515
HspAI	GCGC	3 cut(s)	262, 306, 583
Kzo9I	GATC	1 cut(s)	21
LguI	GCTCTTC	1 cut(s)	252
LmnI	GCTCC	2 cut(s)	286, 508
Lsp1109I	GCAGC	3 cut(s)	87, 107, 346
LweI	GCATC	1 cut(s)	109
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	55, 686
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	6 cut(s)	40, 243, 269, 293, 508, 628
MfeI	CAATTG	2 cut(s)	658, 713
MhlI	GDGCHC	1 cut(s)	681
MlyI	GAGTC	1 cut(s)	817
MmeI	TCCRAC	2 cut(s)	339, 350
MseI	TTAA	3 cut(s)	404, 456, 723
MslI	CAYNNNNRTG	3 cut(s)	182, 684, 747
MspA1I	CMGCKG	1 cut(s)	78
MunI	CAATTG	2 cut(s)	658, 713
Mva1269I	GAATGC	2 cut(s)	694, 780
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	3 cut(s)	187, 272, 515
NlaIV	GGNNCC	1 cut(s)	288
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	2 cut(s)	55, 686
OliI	CACNNNNGTG	1 cut(s)	684
PciSI	GCTCTTC	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	1 cut(s)	687
PctI	GAATGC	2 cut(s)	694, 780
PfeI	GAWTC	5 cut(s)	272, 299, 538, 599, 800
PflMI	CCANNNNNTGG	1 cut(s)	752
PkrI	GCNGC	4 cut(s)	74, 77, 97, 336
PleI	GAGTC	1 cut(s)	816
PpsI	GAGTC	1 cut(s)	816
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	229
PstNI	CAGNNNCTG	1 cut(s)	388
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
RseI	CAYNNNNRTG	3 cut(s)	182, 684, 747
SapI	GCTCTTC	1 cut(s)	252
SaqAI	TTAA	3 cut(s)	404, 456, 723
SatI	GCNGC	4 cut(s)	73, 76, 96, 335
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	1 cut(s)	229
ScaI	AGTACT	1 cut(s)	111
SchI	GAGTC	1 cut(s)	817
SduI	GDGCHC	1 cut(s)	681
SetI	ASST	8 cut(s)	62, 162, 206, 404, 414, 423, 454, 736
SfaNI	GCATC	1 cut(s)	109
SmiMI	CAYNNNNRTG	3 cut(s)	182, 684, 747
SsiI	CCGC	2 cut(s)	73, 78
TaaI	ACNGT	1 cut(s)	357
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	2 cut(s)	65, 200
TatI	WGTACW	1 cut(s)	109
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	5 cut(s)	272, 299, 538, 599, 800
Tru1I	TTAA	3 cut(s)	404, 456, 723
Tru9I	TTAA	3 cut(s)	404, 456, 723
TscAI	CASTG	1 cut(s)	764
TseFI	GTSAC	2 cut(s)	55, 686
TseI	GCWGC	3 cut(s)	75, 95, 334
Tsp45I	GTSAC	2 cut(s)	55, 686
TspDTI	ATGAA	3 cut(s)	180, 285, 389
TspRI	CASTG	1 cut(s)	764
Van91I	CCANNNNNTGG	1 cut(s)	752
XapI	RAATTY	3 cut(s)	192, 293, 320
ZrmI	AGTACT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.