Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009754

Physical Location & Seq

Genomic Coordinates Reverse (-)

29134707 .. 29135056

Gene Structure 350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44784

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGTTGGGGAACGATACAGAACGAAACTCACAGACCAGAAAGATGGGTCGGGGGAAAATTGAGATCAAGAAGATTGAAAATCTCAGTAGCAGGCAAGTCACGTTCTCAAAACGCCGCAGCGGATTGTTCAAGAAGGCAGCCGAATTGTCAGTACTATGCGATGCCGAGATTGCAGTCATAATTTTTTCTCAAACTGGAAAGCTTTATGAACAATCAAGCACCAGGTGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009889 GO:0009909 GO:0009910 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048229 GO:0048519 GO:0048577 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

77

Amino Acids

8.68

Weight (kDa)

9.93

Isoelectric Point (pI)

61.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	24 - 70	3.7e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57390 AT3G57390 AT3G57390
fragaria_vesca	FvH4_4g20680 FvH4_4g20680
malus_domestica	MD00G1106300.v1.1
prunus_persica	Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1 Prupe.7G055900_v2.0.a1
pyrus_communis	pycom14g06350
rosa_chinensis	RchiOBHm_Chr3g0483031
rosa_laevigata	RLG00000023305
rosa_multiflora	Rmu_sc0000441.1_g000133
rosa_roxburghii	Rroxscaffold_6G00398700
rosa_rugosa	Rorug03G0203800 Rorug03G0203900
rosa_samantha	Rh3AG251800 Rh3BG288400 Rh3CG286000 Rh3DG281600
rosa_wichuraiana	Rw3G022780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	115, 120
AdeI	CACNNNGTG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	77, 130
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
ApeKI	GCWGC	2 cut(s)	117, 137
BbvI	GCAGC	2 cut(s)	129, 149
BccI	CCATC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	223
BisI	GCNGC	3 cut(s)	115, 118, 138
BlsI	GCNGC	3 cut(s)	116, 119, 139
BmcAI	AGTACT	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	97
BseNI	ACTGG	1 cut(s)	199
BseXI	GCAGC	2 cut(s)	129, 149
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	2 cut(s)	115, 120
BspCNI	CTCAG	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	199
BssMI	GATC	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	83
BstKTI	GATC	1 cut(s)	66
BstMBI	GATC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	129, 149
BstXI	CCANNNNNNTGG	1 cut(s)	43
BtgZI	GCGATG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	92
CsiI	ACCWGGT	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	152
CviJI	RGCY	2 cut(s)	140, 202
CviKI_1	RGCY	2 cut(s)	140, 202
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
DraIII	CACNNNGTG	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	221
FaiI	YATR	3 cut(s)	157, 179, 207
Fnu4HI	GCNGC	3 cut(s)	115, 118, 138
Fsp4HI	GCNGC	3 cut(s)	115, 118, 138
GluI	GCNGC	3 cut(s)	115, 118, 138
HindIII	AAGCTT	1 cut(s)	200
Hpy188III	TCNNGA	2 cut(s)	67, 130
HpyAV	CCTTC	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	63
LpnPI	CCDG	4 cut(s)	49, 76, 180, 208
Lsp1109I	GCAGC	2 cut(s)	129, 149
LweI	GCATC	1 cut(s)	151
MabI	ACCWGGT	1 cut(s)	221
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	1 cut(s)	82
MluCI	AATT	3 cut(s)	57, 143, 180
MspA1I	CMGCKG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	1 cut(s)	63
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	97
PkrI	GCNGC	3 cut(s)	116, 119, 139
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SatI	GCNGC	3 cut(s)	115, 118, 138
Sau3AI	GATC	1 cut(s)	63
ScaI	AGTACT	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	223
SetI	ASST	3 cut(s)	104, 204, 227
SexAI	ACCWGGT	1 cut(s)	221
SfaNI	GCATC	1 cut(s)	151
Sse9I	AATT	3 cut(s)	57, 143, 180
SsiI	CCGC	2 cut(s)	115, 120
StyD4I	CCNGG	1 cut(s)	221
TaiI	ACGT	1 cut(s)	104
TasI	AATT	3 cut(s)	57, 143, 180
TatI	WGTACW	1 cut(s)	151
TauI	GCSGC	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	2 cut(s)	117, 137
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	222
ZrmI	AGTACT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.