Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004957

Physical Location & Seq

Genomic Coordinates Reverse (-)

21475805 .. 21478187

Gene Structure 2383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G58010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCATTGATCCAACATGGTTCGGTTTCTGGGACCTCTGCGGTTCGATTGAGCTTCTCATCCTCTGTATCACCACCGTCGTCTTCTCCTCCACTGTCAAGGGTTTCTCTCAATTTTCAGTCGGAGAAGAAGAGTTGTTACCGGAGAATGATATGCAGAGCTATGGTTCAAGACTCGGTTCAAGGGATTCCTTCAGTTTACGCCAGAGAAATGGAGCGTCTCTCTGCTAAGGAATCGCTTATTCTCGCCTTCAATGATGCTGGAGGATTTGAGGCTCTAGTTACAGGGAAGATCACTGATATGCAAAAGATTGATGTCAATGAAAGGATAACGAATCTTGAGCGGCTTAATCCAACTCCTAGACCAACCACGTCTCCTTATCTTGAAGGTAGATGGAGTTTTGAGTGGTTTGGAGTCAACACTCCTGGTTCTCTTGCTGTTCGGGTTATGTTCGAGAGGTTCCCTTCGACATTGGTGAGTCTATCCAATATGGAAATATTCATTAAAGATAATAACACAAAGGCAACAGCAAACATCAAACTCCTAAACTCGATAGAAAACAAAATCACCCTGTCATCGAAATTGACAATAGAAGGGCCTTTAAGGATGAAAGAAGAGTATTTAGAGGGATTGCTCGAGTCGCCAACGGTTATTGAAGAAGCAGTACCTGACCAACTAAGAGGTTTATTGGGTCAAGCTACTACCACGTTGCAACAGCTTCCTGAACCTATCAAAGATACTCTAGCCAATGGTCTAAGAATCCCCCTTGGTGGAACTTACCAAAGATTCTTCATGATATCTTATCTAGACGACGAGATTCTTATTGTAAGAGATACCGCAGGAGTGCCTGAAGTTCTAACGAGGGTGGAAACATCGTCTCCGATGTCTTCATCGAGTGTTGTAGAGAATCTTGAATACAACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

308

Amino Acids

34.09

Weight (kDa)

5.36

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	101 - 282	5e-13	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42130 AT2G42130 AT2G42130 AT2G42130 AT2G42130 AT3G58010 AT3G58010
fragaria_vesca	FvH4_6g22380 FvH4_6g22380
malus_domestica	MD12G1057400.v1.1 MD14G1058000.v1.1
prunus_persica	Prupe.7G076700_v2.0.a1 Prupe.7G076700_v2.0.a1 Prupe.7G076700_v2.0.a1 Prupe.7G076700_v2.0.a1 Prupe.7G076700_v2.0.a1
pyrus_communis	pycom12g05110 pycom14g04700
rosa_chinensis	RchiOBHm_Chr3g0479711
rosa_laevigata	RLG00000023547
rosa_multiflora	Rmu_sc0003755.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402050
rosa_rugosa	Rorug03G0177700 Rorug03G0177800
rosa_samantha	Rh3AG228500 Rh3BG261500 Rh3CG258600 Rh3DG254800
rosa_wichuraiana	Rw3G020430 Rw3G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	343
AciI	CCGC	3 cut(s)	41, 343, 837
AclWI	GGATC	1 cut(s)	4
AcuI	CTGAAG	2 cut(s)	177, 870
AfaI	GTAC	1 cut(s)	666
AfiI	CCNNNNNNNGG	1 cut(s)	770
AgsI	TTSAA	6 cut(s)	170, 182, 253, 386, 656, 914
AjiI	CACGTC	1 cut(s)	372
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	4 cut(s)	54, 161, 698, 718
AluI	AGCT	4 cut(s)	54, 161, 698, 718
Alw26I	GTCTC	3 cut(s)	224, 378, 882
AlwI	GGATC	1 cut(s)	4
AlwNI	CAGNNNCTG	1 cut(s)	668
Ama87I	CYCGRG	1 cut(s)	635
AoxI	GGCC	1 cut(s)	596
AspS9I	GGNCC	2 cut(s)	33, 596
AsuHPI	GGTGA	3 cut(s)	63, 487, 559
AvaI	CYCGRG	1 cut(s)	635
AvaII	GGWCC	1 cut(s)	33
BarI	GAAGNNNNNNTAC	4 cut(s)	122, 154, 648, 680
BbsI	GAAGAC	2 cut(s)	75, 879
BccI	CCATC	1 cut(s)	387
BciT130I	CCWGG	1 cut(s)	426
BcoDI	GTCTC	3 cut(s)	224, 378, 882
BfaI	CTAG	4 cut(s)	278, 360, 743, 806
BisI	GCNGC	1 cut(s)	344
BlsI	GCNGC	1 cut(s)	345
Bme1390I	CCNGG	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	33
BmeT110I	CYCGRG	1 cut(s)	635
BmgBI	CACGTC	1 cut(s)	372
BmgT120I	GGNCC	2 cut(s)	33, 596
BmiI	GGNNCC	2 cut(s)	34, 461
BmrFI	CCNGG	1 cut(s)	426
BmsI	GCATC	1 cut(s)	247
BpiI	GAAGAC	2 cut(s)	75, 879
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpmI	CTGGAG	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	766
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	4 cut(s)	358, 388, 862, 892
Bsc4I	CCNNNNNNNGG	1 cut(s)	770
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	766
BseGI	GGATG	2 cut(s)	59, 612
BseLI	CCNNNNNNNGG	1 cut(s)	770
BseRI	GAGGAG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	598
BsiHKCI	CYCGRG	1 cut(s)	635
BsiSI	CCGG	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	770
BsmAI	GTCTC	3 cut(s)	224, 378, 882
BsmBI	CGTCTC	3 cut(s)	224, 378, 882
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	598
BsoBI	CYCGRG	1 cut(s)	635
Bsp143I	GATC	2 cut(s)	9, 291
BspACI	CCGC	3 cut(s)	41, 343, 837
BspANI	GGCC	1 cut(s)	598
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	2 cut(s)	34, 461
BspPI	GGATC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	766
BssMI	GATC	2 cut(s)	9, 291
BssT1I	CCWWGG	1 cut(s)	766
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	4 cut(s)	78, 96, 649, 923
Bst6I	CTCTTC	2 cut(s)	125, 609
BstDEI	CTNAG	3 cut(s)	228, 677, 755
BstF5I	GGATG	2 cut(s)	59, 612
BstKTI	GATC	2 cut(s)	12, 294
BstMAI	GTCTC	3 cut(s)	224, 378, 882
BstMBI	GATC	2 cut(s)	9, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	640
BstNI	CCWGG	1 cut(s)	426
BstSCI	CCNGG	1 cut(s)	424
BstV2I	GAAGAC	2 cut(s)	75, 879
BstXI	CCANNNNNNTGG	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	598
BtrI	CACGTC	1 cut(s)	372
BtsCI	GGATG	2 cut(s)	59, 612
BtsIMutI	CAGTG	2 cut(s)	92, 294
CaiI	CAGNNNCTG	1 cut(s)	668
CciI	TCATGA	1 cut(s)	792
Cfr13I	GGNCC	2 cut(s)	33, 596
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	665
CviAII	CATG	2 cut(s)	17, 793
CviJI	RGCY	8 cut(s)	54, 161, 275, 346, 598, 698, 718, 746
CviKI_1	RGCY	8 cut(s)	54, 161, 275, 346, 598, 698, 718, 746
CviQI	GTAC	1 cut(s)	665
DdeI	CTNAG	3 cut(s)	228, 677, 755
DpnI	GATC	2 cut(s)	11, 293
DpnII	GATC	2 cut(s)	9, 291
Eam1104I	CTCTTC	2 cut(s)	125, 609
EarI	CTCTTC	2 cut(s)	125, 609
Eco130I	CCWWGG	1 cut(s)	766
Eco32I	GATATC	1 cut(s)	798
Eco47I	GGWCC	1 cut(s)	33
Eco57I	CTGAAG	2 cut(s)	177, 870
Eco88I	CYCGRG	1 cut(s)	635
EcoO109I	RGGNCCY	2 cut(s)	33, 596
EcoRII	CCWGG	1 cut(s)	424
EcoRV	GATATC	1 cut(s)	798
EcoT14I	CCWWGG	1 cut(s)	766
ErhI	CCWWGG	1 cut(s)	766
Esp3I	CGTCTC	3 cut(s)	224, 378, 882
FaeI	CATG	2 cut(s)	20, 796
FaiI	YATR	7 cut(s)	18, 154, 164, 302, 449, 491, 794
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	2 cut(s)	16, 792
Fnu4HI	GCNGC	1 cut(s)	344
FokI	GGATG	2 cut(s)	46, 619
Fsp4HI	GCNGC	1 cut(s)	344
FspBI	CTAG	4 cut(s)	278, 360, 743, 806
GluI	GCNGC	1 cut(s)	344
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	598
HapII	CCGG	1 cut(s)	142
HgaI	GACGC	1 cut(s)	206
Hin1II	CATG	2 cut(s)	20, 796
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HpaII	CCGG	1 cut(s)	142
HphI	GGTGA	3 cut(s)	63, 487, 559
Hpy166II	GTNNAC	2 cut(s)	199, 418
Hpy188I	TCNGA	2 cut(s)	124, 882
Hpy188III	TCNNGA	8 cut(s)	170, 338, 383, 454, 722, 793, 806, 911
Hpy8I	GTNNAC	2 cut(s)	199, 418
Hpy99I	CGWCG	2 cut(s)	82, 815
HpyAV	CCTTC	5 cut(s)	201, 259, 380, 474, 587
HpyCH4III	ACNGT	4 cut(s)	78, 96, 649, 923
HpyCH4IV	ACGT	2 cut(s)	371, 707
HpyCH4V	TGCA	3 cut(s)	156, 304, 712
HpyF10VI	GCNNNNNNNGC	1 cut(s)	640
HpyF3I	CTNAG	3 cut(s)	228, 677, 755
HpySE526I	ACGT	2 cut(s)	371, 707
Hsp92II	CATG	2 cut(s)	20, 796
Kzo9I	GATC	2 cut(s)	9, 291
LmnI	GCTCC	1 cut(s)	214
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	4 cut(s)	278, 360, 743, 806
MaeII	ACGT	2 cut(s)	371, 707
MaeIII	GTNAC	2 cut(s)	137, 280
MalI	GATC	2 cut(s)	11, 293
MbiI	CCGCTC	1 cut(s)	343
MboI	GATC	2 cut(s)	9, 291
MboII	GAAGA	8 cut(s)	75, 139, 142, 301, 626, 668, 781, 879
MluCI	AATT	2 cut(s)	112, 581
MlyI	GAGTC	4 cut(s)	167, 423, 487, 647
MmeI	TCCRAC	3 cut(s)	37, 102, 377
MnlI	CCTC	9 cut(s)	46, 73, 99, 257, 265, 450, 619, 674, 855
MseI	TTAA	4 cut(s)	348, 504, 602, 925
MslI	CAYNNNNRTG	1 cut(s)	299
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	1 cut(s)	426
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	640
NdeII	GATC	2 cut(s)	9, 291
NlaIII	CATG	2 cut(s)	20, 796
NlaIV	GGNNCC	2 cut(s)	34, 461
PaeR7I	CTCGAG	1 cut(s)	635
PagI	TCATGA	1 cut(s)	792
PfeI	GAWTC	7 cut(s)	187, 233, 334, 759, 786, 817, 907
PkrI	GCNGC	1 cut(s)	345
PleI	GAGTC	4 cut(s)	167, 422, 486, 646
PpsI	GAGTC	4 cut(s)	167, 422, 486, 646
PpuMI	RGGWCCY	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	2 cut(s)	34, 461
PspPI	GGNCC	2 cut(s)	33, 596
PspPPI	RGGWCCY	1 cut(s)	33
PspXI	VCTCGAGB	1 cut(s)	635
PstNI	CAGNNNCTG	1 cut(s)	668
RsaI	GTAC	1 cut(s)	666
RsaNI	GTAC	1 cut(s)	665
RseI	CAYNNNNRTG	1 cut(s)	299
SaqAI	TTAA	4 cut(s)	348, 504, 602, 925
SatI	GCNGC	1 cut(s)	344
Sau3AI	GATC	2 cut(s)	9, 291
Sau96I	GGNCC	2 cut(s)	33, 596
SchI	GAGTC	4 cut(s)	167, 423, 487, 647
ScrFI	CCNGG	1 cut(s)	426
SfaNI	GCATC	1 cut(s)	247
Sfr274I	CTCGAG	1 cut(s)	635
SinI	GGWCC	1 cut(s)	33
SlaI	CTCGAG	1 cut(s)	635
SmiMI	CAYNNNNRTG	1 cut(s)	299
SmlI	CTYRAG	2 cut(s)	338, 635
SmoI	CTYRAG	2 cut(s)	338, 635
Sse9I	AATT	2 cut(s)	112, 581
SsiI	CCGC	3 cut(s)	41, 343, 837
SspI	AATATT	1 cut(s)	498
SspMI	CTAG	4 cut(s)	278, 360, 743, 806
StyD4I	CCNGG	1 cut(s)	424
StyI	CCWWGG	1 cut(s)	766
TaaI	ACNGT	4 cut(s)	78, 96, 649, 923
TaiI	ACGT	2 cut(s)	374, 710
TaqI	TCGA	7 cut(s)	46, 453, 467, 551, 578, 636, 893
TasI	AATT	2 cut(s)	112, 581
TauI	GCSGC	1 cut(s)	346
TfiI	GAWTC	7 cut(s)	187, 233, 334, 759, 786, 817, 907
Tru1I	TTAA	4 cut(s)	348, 504, 602, 925
Tru9I	TTAA	4 cut(s)	348, 504, 602, 925
TscAI	CASTG	2 cut(s)	99, 301
TspDTI	ATGAA	5 cut(s)	336, 490, 623, 781, 879
TspRI	CASTG	2 cut(s)	99, 301
VpaK11BI	GGWCC	1 cut(s)	33
XbaI	TCTAGA	1 cut(s)	805
XhoI	CTCGAG	1 cut(s)	635
XspI	CTAG	4 cut(s)	278, 360, 743, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.