Rroxscaffold_6G00402050

plastid-lipid-associated protein 13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0004957
Physical Location & Seq
Reverse (-)
24448531 .. 24454322
5792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00402050.1

Sequence Viewer

Length: 942 bp
ATGGCGACCTTACAGGGCCAGCTTTCTGCGATTTCTGCCGTCGGCTCCTTTTGCTCCTCGTCTTCATCGTCCTCCTCCCTCTCTTCCACCACCGCCACTTCACTGGTTTCCGTCGCCACCTGGCCGCAGTCTGCCCGGAAACTCCCCGGAGACCGGAGCCGGAGTCTCCACAGGTCCGTTGTCCGAGCAATGGTTCAGACGGTCTCCGGAGCTCCGGCCGCCTATGCTAAGGAAATGGAGAGGCTCTCCGCTAAAGAATCACTGCTTCTCGCCTTCAAGGATGCTGGGGGTTTTGAGGCATTAGTCACTGGAAAGACGACAGACATGCAGCGGATTGATGTCAATGAGAGGATTACTGCTTTGGAGCGGGTCAATCCAACACCCCGCCCTACAACGTCGCCCTTTTTGGAAGGACGATGGAATTTCGAGTGGTTTGGGTCTGGAAGCCCAGGTCTATTTGCTGCTAGATTTCTATTAGAGAGATTTCCTTCAACAGTGGCCAGTTTGTCAAAAATGGAGGTGCTCATCAAGGAAGGGAATGCAAAGATTACAGCAAACATGAAAATATTGAACTCGATAGAAAGCAAATTTTCTCTGTCAACCAAGTTGTCTGTGGAGGGACCAGTTAGAATGAAAGAGGAATATGTTGAGGGGATTCTTGACACACCAACAGTTATTGAAGAAACATTACCTGAACAGCTAAAAGGTGCACTTGGTCAGGCAGTCAACACAGTGCAACAGCTTCCTGTTCCAATTAGGGATGCCTTCGCCAGTGGGTTGAGAGTTCCTTTAACTGGAGCTTTCGAGAGACTCTTCATGATTTCCTATCTTGATATGGAGATACTGATCATAAGAGATGCTGCTGGAGTTCCTGAAATACTTACAAGGTTAGATTCACCCTCATCTCCCCTGGCAGAAACCATCCCGGAGTATGAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

313

Amino Acids

33.86

Weight (kDa)

5.74

Isoelectric Point (pI)

49.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 106 - 290 4.1e-11 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 367
AccIII TCCGGA 1 cut(s) 206
AciI CCGC 7 cut(s) 93, 125, 219, 249, 331, 367, 385
AcoI YGGCCR 3 cut(s) 122, 216, 498
AcsI RAATTY 2 cut(s) 421, 587
AfiI CCNNNNNNNGG 3 cut(s) 153, 190, 794
AgsI TTSAA 4 cut(s) 277, 492, 571, 680
AjnI CCWGG 3 cut(s) 119, 448, 909
AluBI AGCT 6 cut(s) 22, 212, 700, 742, 800, 939
AluI AGCT 6 cut(s) 22, 212, 700, 742, 800, 939
Alw21I GWGCWC 3 cut(s) 214, 525, 712
Alw26I GTCTC 4 cut(s) 144, 170, 208, 802
Alw44I GTGCAC 1 cut(s) 708
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 4 cut(s) 16, 122, 216, 498
ApaLI GTGCAC 1 cut(s) 708
ApeKI GCWGC 3 cut(s) 328, 461, 860
ApoI RAATTY 2 cut(s) 421, 587
AspS9I GGNCC 3 cut(s) 16, 174, 620
AsuC2I CCSGG 3 cut(s) 136, 147, 926
AsuHPI GGTGA 1 cut(s) 888
AvaII GGWCC 2 cut(s) 174, 620
BaeGI GKGCMC 1 cut(s) 712
BalI TGGCCA 1 cut(s) 500
BanII GRGCYC 1 cut(s) 214
BarI GAAGNNNNNNTAC 2 cut(s) 672, 704
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 3 cut(s) 214, 525, 712
BbvI GCAGC 3 cut(s) 340, 448, 847
BccI CCATC 2 cut(s) 411, 929
BceAI ACGGC 1 cut(s) 23
BcgI CGANNNNNNTGC 2 cut(s) 307, 341
BciT130I CCWGG 3 cut(s) 121, 450, 911
BclI TGATCA 1 cut(s) 846
BcnI CCSGG 3 cut(s) 136, 147, 926
BcoDI GTCTC 4 cut(s) 144, 170, 208, 802
BfaI CTAG 1 cut(s) 465
BisI GCNGC 5 cut(s) 125, 219, 329, 462, 861
BlsI GCNGC 5 cut(s) 126, 220, 330, 463, 862
Bme1390I CCNGG 6 cut(s) 121, 136, 147, 450, 911, 926
Bme18I GGWCC 2 cut(s) 174, 620
BmgT120I GGNCC 3 cut(s) 16, 174, 620
BmiI GGNNCC 3 cut(s) 46, 158, 621
BmrFI CCNGG 6 cut(s) 121, 136, 147, 450, 911, 926
BmsI GCATC 3 cut(s) 271, 751, 847
BpiI GAAGAC 1 cut(s) 54
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpmI CTGGAG 2 cut(s) 816, 885
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 3 cut(s) 136, 147, 926
BsaBI GATNNNNATC 1 cut(s) 845
BsaI GGTCTC 2 cut(s) 144, 208
BsaJI CCNNGG 3 cut(s) 145, 448, 909
BsaWI WCCGGW 2 cut(s) 153, 206
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 190, 794
Bse1I ACTGG 6 cut(s) 108, 313, 501, 623, 771, 799
Bse3DI GCAATG 1 cut(s) 195
Bse8I GATNNNNATC 1 cut(s) 845
BseAI TCCGGA 1 cut(s) 206
BseBI CCWGG 3 cut(s) 121, 450, 911
BseDI CCNNGG 3 cut(s) 145, 448, 909
BseGI GGATG 3 cut(s) 286, 766, 921
BseJI GATNNNNATC 1 cut(s) 845
BseLI CCNNNNNNNGG 3 cut(s) 153, 190, 794
BseMI GCAATG 1 cut(s) 195
BseNI ACTGG 6 cut(s) 108, 313, 501, 623, 771, 799
BseRI GAGGAG 2 cut(s) 46, 64
BseSI GKGCMC 1 cut(s) 712
BseX3I CGGCCG 1 cut(s) 216
BseXI GCAGC 3 cut(s) 340, 448, 847
BseYI CCCAGC 1 cut(s) 284
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 4 cut(s) 18, 124, 218, 500
BsiEI CGRYCG 1 cut(s) 219
BsiHKAI GWGCWC 3 cut(s) 214, 525, 712
BsiSI CCGG 7 cut(s) 136, 147, 154, 160, 207, 215, 926
BslFI GGGAC 1 cut(s) 633
BslI CCNNNNNNNGG 3 cut(s) 153, 190, 794
BsmAI GTCTC 4 cut(s) 144, 170, 208, 802
BsmFI GGGAC 1 cut(s) 633
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 4 cut(s) 18, 124, 218, 500
Bso31I GGTCTC 2 cut(s) 144, 208
Bsp1286I GDGCHC 3 cut(s) 214, 525, 712
Bsp13I TCCGGA 1 cut(s) 206
Bsp143I GATC 1 cut(s) 846
BspACI CCGC 7 cut(s) 93, 125, 219, 249, 331, 367, 385
BspANI GGCC 4 cut(s) 18, 124, 218, 500
BspEI TCCGGA 1 cut(s) 206
BspHI TCATGA 1 cut(s) 816
BspLI GGNNCC 3 cut(s) 46, 158, 621
BspTNI GGTCTC 2 cut(s) 144, 208
BsrBI CCGCTC 1 cut(s) 367
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 6 cut(s) 108, 313, 501, 623, 771, 799
BssECI CCNNGG 3 cut(s) 145, 448, 909
BssMI GATC 1 cut(s) 846
Bst2UI CCWGG 3 cut(s) 121, 450, 911
Bst4CI ACNGT 4 cut(s) 202, 496, 673, 733
Bst6I CTCTTC 2 cut(s) 88, 818
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 3 cut(s) 286, 766, 921
BstKTI GATC 1 cut(s) 849
BstMAI GTCTC 4 cut(s) 144, 170, 208, 802
BstMBI GATC 1 cut(s) 846
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 4 cut(s) 35, 51, 218, 224
BstNI CCWGG 3 cut(s) 121, 450, 911
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 6 cut(s) 119, 134, 145, 448, 909, 924
BstSLI GKGCMC 1 cut(s) 712
BstV1I GCAGC 3 cut(s) 340, 448, 847
BstV2I GAAGAC 1 cut(s) 54
BstXI CCANNNNNNTGG 1 cut(s) 103
BstZI CGGCCG 1 cut(s) 216
BsuRI GGCC 4 cut(s) 18, 124, 218, 500
BtsCI GGATG 3 cut(s) 286, 766, 921
BtsI GCAGTG 1 cut(s) 260
BtsIMutI CAGTG 6 cut(s) 101, 260, 306, 501, 738, 778
Cac8I GCNNGC 1 cut(s) 20
CciI TCATGA 1 cut(s) 816
Cfr13I GGNCC 3 cut(s) 16, 174, 620
CviAII CATG 3 cut(s) 325, 559, 817
DdeI CTNAG 1 cut(s) 228
DpnI GATC 1 cut(s) 848
DpnII GATC 1 cut(s) 846
EaeI YGGCCR 3 cut(s) 122, 216, 498
EagI CGGCCG 1 cut(s) 216
Eam1104I CTCTTC 2 cut(s) 88, 818
EarI CTCTTC 2 cut(s) 88, 818
Ecl136II GAGCTC 1 cut(s) 212
EclXI CGGCCG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 214
Eco31I GGTCTC 2 cut(s) 144, 208
Eco47I GGWCC 2 cut(s) 174, 620
Eco52I CGGCCG 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 212
EcoICRI GAGCTC 1 cut(s) 212
EcoRII CCWGG 3 cut(s) 119, 448, 909
EcoT38I GRGCYC 1 cut(s) 214
FaeI CATG 3 cut(s) 328, 562, 820
FaiI YATR 8 cut(s) 225, 326, 560, 645, 818, 836, 851, 933
FalI AAGNNNNNCTT 2 cut(s) 696, 728
FaqI GGGAC 1 cut(s) 633
FatI CATG 3 cut(s) 324, 558, 816
FauI CCCGC 2 cut(s) 360, 392
FbaI TGATCA 1 cut(s) 846
Fnu4HI GCNGC 5 cut(s) 125, 219, 329, 462, 861
FokI GGATG 3 cut(s) 293, 773, 908
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 5 cut(s) 125, 219, 329, 462, 861
FspBI CTAG 1 cut(s) 465
GluI GCNGC 5 cut(s) 125, 219, 329, 462, 861
GsaI CCCAGC 1 cut(s) 288
GsuI CTGGAG 2 cut(s) 816, 885
HaeIII GGCC 4 cut(s) 18, 124, 218, 500
HapII CCGG 7 cut(s) 136, 147, 154, 160, 207, 215, 926
Hin1II CATG 3 cut(s) 328, 562, 820
HincII GTYRAC 2 cut(s) 600, 727
HindII GTYRAC 2 cut(s) 600, 727
HinfI GANTC 5 cut(s) 163, 257, 655, 810, 893
HpaII CCGG 7 cut(s) 136, 147, 154, 160, 207, 215, 926
HphI GGTGA 1 cut(s) 888
Hpy166II GTNNAC 3 cut(s) 600, 710, 727
Hpy188I TCNGA 2 cut(s) 185, 198
Hpy188III TCNNGA 7 cut(s) 207, 441, 659, 805, 817, 830, 872
Hpy8I GTNNAC 3 cut(s) 600, 710, 727
Hpy99I CGWCG 3 cut(s) 44, 116, 400
HpyAV CCTTC 5 cut(s) 283, 404, 498, 527, 775
HpyCH4III ACNGT 4 cut(s) 202, 496, 673, 733
HpyCH4IV ACGT 1 cut(s) 395
HpyCH4V TGCA 4 cut(s) 328, 542, 710, 736
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 51, 218, 224
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 1 cut(s) 395
Hsp92II CATG 3 cut(s) 328, 562, 820
Kpn2I TCCGGA 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 846
Kzo9I GATC 1 cut(s) 846
LmnI GCTCC 7 cut(s) 50, 59, 156, 209, 217, 364, 797
Lsp1109I GCAGC 3 cut(s) 340, 448, 847
LweI GCATC 3 cut(s) 271, 751, 847
MaeI CTAG 1 cut(s) 465
MaeII ACGT 1 cut(s) 395
MaeIII GTNAC 1 cut(s) 304
MalI GATC 1 cut(s) 848
MbiI CCGCTC 1 cut(s) 367
MboI GATC 1 cut(s) 846
MboII GAAGA 4 cut(s) 54, 75, 692, 805
MhlI GDGCHC 3 cut(s) 214, 525, 712
MlsI TGGCCA 1 cut(s) 500
MluCI AATT 3 cut(s) 421, 587, 753
MluNI TGGCCA 1 cut(s) 500
MlyI GAGTC 2 cut(s) 172, 804
MmeI TCCRAC 1 cut(s) 401
Mox20I TGGCCA 1 cut(s) 500
MroI TCCGGA 1 cut(s) 206
MscI TGGCCA 1 cut(s) 500
MseI TTAA 1 cut(s) 791
Msp20I TGGCCA 1 cut(s) 500
MspA1I CMGCKG 1 cut(s) 331
MspI CCGG 7 cut(s) 136, 147, 154, 160, 207, 215, 926
MspR9I CCNGG 6 cut(s) 121, 136, 147, 450, 911, 926
Mva1269I GAATGC 1 cut(s) 544
MvaI CCWGG 3 cut(s) 121, 450, 911
MwoI GCNNNNNNNGC 4 cut(s) 35, 51, 218, 224
NciI CCSGG 3 cut(s) 136, 147, 926
NdeII GATC 1 cut(s) 846
NlaIII CATG 3 cut(s) 328, 562, 820
NlaIV GGNNCC 3 cut(s) 46, 158, 621
NmuCI GTSAC 1 cut(s) 304
NspI RCATGY 1 cut(s) 328
PagI TCATGA 1 cut(s) 816
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PctI GAATGC 1 cut(s) 544
PfeI GAWTC 3 cut(s) 257, 655, 893
PfoI TCCNGGA 1 cut(s) 924
PkrI GCNGC 5 cut(s) 126, 220, 330, 463, 862
PleI GAGTC 2 cut(s) 171, 804
PpsI GAGTC 2 cut(s) 171, 804
Psp124BI GAGCTC 1 cut(s) 214
Psp6I CCWGG 3 cut(s) 119, 448, 909
PspFI CCCAGC 1 cut(s) 284
PspGI CCWGG 3 cut(s) 119, 448, 909
PspN4I GGNNCC 3 cut(s) 46, 158, 621
PspPI GGNCC 3 cut(s) 16, 174, 620
SacI GAGCTC 1 cut(s) 214
SaqAI TTAA 1 cut(s) 791
SatI GCNGC 5 cut(s) 125, 219, 329, 462, 861
Sau3AI GATC 1 cut(s) 846
Sau96I GGNCC 3 cut(s) 16, 174, 620
SchI GAGTC 2 cut(s) 172, 804
ScrFI CCNGG 6 cut(s) 121, 136, 147, 450, 911, 926
SduI GDGCHC 3 cut(s) 214, 525, 712
SfaNI GCATC 3 cut(s) 271, 751, 847
SinI GGWCC 2 cut(s) 174, 620
Sse9I AATT 3 cut(s) 421, 587, 753
SsiI CCGC 7 cut(s) 93, 125, 219, 249, 331, 367, 385
SspI AATATT 1 cut(s) 567
SspMI CTAG 1 cut(s) 465
SstI GAGCTC 1 cut(s) 214
StyD4I CCNGG 6 cut(s) 119, 134, 145, 448, 909, 924
TaaI ACNGT 4 cut(s) 202, 496, 673, 733
TaiI ACGT 1 cut(s) 398
TaqI TCGA 3 cut(s) 426, 575, 804
TasI AATT 3 cut(s) 421, 587, 753
TauI GCSGC 2 cut(s) 127, 221
TfiI GAWTC 3 cut(s) 257, 655, 893
Tru1I TTAA 1 cut(s) 791
Tru9I TTAA 1 cut(s) 791
TscAI CASTG 6 cut(s) 108, 267, 313, 501, 738, 778
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 3 cut(s) 328, 461, 860
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 4 cut(s) 54, 575, 647, 805
TspGWI ACGGA 2 cut(s) 100, 166
TspRI CASTG 6 cut(s) 108, 267, 313, 501, 738, 778
VneI GTGCAC 1 cut(s) 708
VpaK11BI GGWCC 2 cut(s) 174, 620
XapI RAATTY 2 cut(s) 421, 587
XceI RCATGY 1 cut(s) 328
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.